genome.fa.s9.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  101  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33178010--33178223	86	2.5	84	79	9	211	21	29	21	26	1.99
33178072--33178299	86	2.7	87	80	6	259	24	30	21	23	1.99
33179037--33179821	172	4.6	172	77	4	654	24	30	21	23	1.99
33179012--33179821	86	9.4	86	76	4	540	24	30	22	23	1.99
33179782--33179901	43	2.8	43	76	2	134	23	30	24	22	1.99
33180035--33180175	76	1.9	76	81	0	174	23	36	21	19	1.95
33180109--33181265	86	13.6	86	75	4	415	22	30	21	25	1.99
33180250--33181286	172	6.1	171	76	6	540	23	29	21	24	1.99
33180111--33180610	258	1.9	258	78	2	538	22	30	22	24	1.99
33180336--33180825	162	3.0	162	80	6	407	22	30	21	25	1.99
33180391--33181286	334	2.7	334	76	5	757	23	29	21	25	1.99
33180192--33181116	506	1.8	506	79	2	1077	22	29	21	26	1.99
33180659--33181286	86	7.3	86	77	3	485	23	29	21	25	1.99
33181170--33181421	135	1.9	135	82	0	324	23	32	20	24	1.98
33181676--33181793	43	2.7	43	84	7	150	24	33	22	20	1.97
33182247--33182408	86	1.9	86	87	2	236	22	32	20	23	1.98
33182231--33182478	86	2.9	85	80	2	228	23	33	19	23	1.97
33183179--33184065	86	10.2	84	71	7	427	23	31	20	24	1.98
33183723--33183891	91	1.9	91	82	5	216	23	34	21	20	1.96
33184717--33185151	86	5.1	86	80	3	455	23	31	22	21	1.98
33184717--33185166	172	2.6	172	87	0	612	23	32	23	21	1.98
33185951--33186244	86	3.4	86	81	0	336	22	33	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33186456--33186480	3	8.3	3	100	0	50	64	0	0	36	0.94
33191118--33191590	43	11.2	43	73	8	125	24	29	24	21	1.99
33191270--33191556	86	3.3	86	81	0	270	25	31	22	21	1.98
33191236--33191588	129	2.7	129	80	1	314	24	30	22	21	1.99
33191628--33191789	86	1.9	85	81	7	193	22	30	22	23	1.99
33192037--33192266	85	2.7	85	81	5	252	25	31	20	21	1.98
33192119--33192333	85	2.5	84	78	4	234	25	32	19	22	1.97
33193000--33193197	85	2.3	86	85	0	272	22	31	24	21	1.98
33197569--33198177	86	7.1	86	82	3	667	21	32	22	23	1.98
33197625--33198176	171	3.2	170	83	4	648	21	32	23	22	1.98
33197612--33198176	254	2.2	257	82	4	685	21	32	23	23	1.98
33197835--33198127	43	6.9	43	67	14	135	21	34	22	20	1.97
33197909--33198127	43	5.1	43	68	13	164	20	33	24	21	1.97
33198461--33198485	3	8.3	3	100	0	50	64	0	0	36	0.94
33202742--33202828	43	2.0	43	84	0	111	22	32	22	21	1.98
33202754--33203434	303	2.2	304	82	4	822	24	30	22	22	1.99
33203457--33203645	86	2.2	86	77	3	202	23	31	20	24	1.98
33204285--33204995	86	8.3	85	81	3	703	23	30	22	23	1.99
33204285--33204987	172	4.1	171	82	4	790	23	30	22	23	1.99
33204546--33204848	43	7.0	43	65	11	154	23	29	24	23	1.99
33204780--33204891	43	2.6	43	71	10	102	25	34	20	19	1.96
33205025--33205124	43	2.3	43	81	3	112	20	34	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33205425--33205580	76	2.1	75	80	3	170	23	28	24	23	1.99
33205569--33205798	86	2.8	78	70	12	201	21	30	23	24	1.99
33205361--33205799	164	2.7	162	79	3	454	22	29	23	25	1.99
33206441--33207523	86	12.6	86	77	3	807	23	30	22	23	1.99
33207056--33207183	43	3.0	43	64	13	118	21	32	22	23	1.98
33213801--33214470	43	15.2	43	70	10	370	24	30	23	21	1.99
33213951--33214143	103	1.9	103	83	4	255	24	30	23	21	1.99
33213918--33214191	146	1.9	146	81	7	342	24	29	24	21	1.99
33213875--33214216	189	1.8	189	83	3	456	24	30	24	21	1.99
33213823--33214282	232	2.0	234	79	5	511	24	31	23	20	1.98
33215354--33215560	86	2.4	86	82	3	238	23	29	22	23	1.99
33215430--33215598	86	2.0	86	81	0	203	22	30	23	24	1.99
33216923--33217434	43	11.9	43	78	2	436	25	28	25	21	1.99
33217378--33217586	86	2.4	86	83	4	242	23	32	22	21	1.98
33217793--33217950	76	2.1	76	80	4	176	20	30	24	24	1.99
33217872--33218178	86	3.6	85	78	4	260	23	29	19	26	1.98
33218686--33219743	86	12.7	86	76	6	843	22	31	22	23	1.98
33218765--33218900	43	3.2	42	67	12	114	23	29	22	24	1.99
33219088--33219299	78	2.7	78	81	9	247	22	28	21	28	1.99
33219268--33219397	43	3.0	43	72	8	129	22	32	24	20	1.98
33218744--33219725	326	2.9	327	78	8	853	22	32	21	23	1.98
33219414--33219725	159	1.9	161	84	2	412	22	34	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33219578--33219735	83	1.9	83	87	5	230	20	36	22	21	1.96
33219929--33219956	3	9.3	3	100	0	56	32	0	0	67	0.91
33234765--33235605	129	6.5	129	73	7	532	23	28	24	23	1.99
33234774--33235376	43	14.1	43	78	4	520	23	28	25	22	1.99
33235343--33235528	85	2.2	86	79	4	216	23	28	23	24	2.00
33235507--33235624	43	2.7	43	85	2	148	22	32	22	22	1.98
33235834--33236122	86	3.4	84	81	6	330	23	31	21	24	1.98
33236367--33236782	86	4.9	86	78	3	336	23	30	22	23	1.99
33236980--33237106	56	2.3	55	87	4	184	45	3	4	46	1.40
33245254--33245517	43	6.1	43	79	1	262	24	30	24	20	1.99
33245270--33245504	86	2.7	86	86	1	310	25	32	23	17	1.97
33245696--33246298	86	7.0	86	77	5	468	23	30	21	24	1.99
33246305--33246395	43	2.1	43	83	4	112	24	29	24	21	1.99
33247070--33247205	43	3.2	42	70	15	116	22	30	23	23	1.99
33246496--33247449	86	11.1	86	75	2	655	23	30	21	24	1.99
33247464--33247579	43	2.7	43	81	5	117	22	27	21	28	1.99
33247480--33247602	43	2.8	42	78	8	104	22	27	22	26	1.99
33247817--33248119	86	3.5	86	82	1	313	22	28	22	26	1.99
33248601--33248653	27	2.0	27	100	0	106	7	47	15	30	1.73
33248816--33249410	86	6.9	84	75	9	413	24	30	20	24	1.98
33249330--33249473	76	1.9	76	85	2	200	24	29	23	22	1.99
33249798--33249945	76	1.9	76	80	2	172	22	32	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33249728--33250031	162	1.9	162	86	2	432	23	31	21	24	1.98
33249895--33250086	86	2.2	86	80	0	213	23	32	19	24	1.98
33250743--33251178	86	5.1	86	78	4	344	24	30	21	23	1.99
33250821--33251179	172	2.1	172	82	4	420	23	31	21	23	1.98
33251388--33251470	33	2.5	33	84	0	112	25	32	21	20	1.98
33251455--33251687	88	2.7	88	79	6	242	23	28	23	25	1.99
33251432--33251748	86	3.7	85	77	6	307	23	31	20	24	1.98
33252381--33253339	86	11.3	86	73	7	572	23	30	21	24	1.99
33252906--33253281	43	8.7	43	66	13	114	23	29	21	25	1.99
33252799--33253339	258	2.1	258	81	3	642	23	30	21	24	1.99
33253946--33254334	86	4.6	83	73	10	254	22	31	21	24	1.98
33254410--33254540	43	3.2	43	65	16	123	21	31	22	25	1.98
33254416--33254576	80	2.0	80	98	0	313	21	30	21	26	1.99
33254764--33255809	86	12.3	86	75	6	768	23	31	20	23	1.98
33254745--33255809	172	6.2	172	77	5	944	23	31	20	23	1.98
33254764--33255809	258	4.1	254	76	6	911	23	31	20	23	1.98
33255429--33255743	162	1.9	162	82	0	387	24	31	20	22	1.98
33256293--33256355	26	2.4	26	91	0	99	7	47	12	31	1.70
33256548--33257187	86	7.6	83	73	11	419	22	31	22	24	1.98
33256542--33257145	172	3.5	172	80	3	662	22	31	22	23	1.98
33256975--33257268	162	1.8	162	82	2	385	23	29	23	23	1.99
33257310--33257385	33	2.3	33	81	6	91	25	31	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33257622--33257814	86	2.2	86	84	1	244	21	30	22	25	1.99
33257456--33257757	162	1.9	162	80	4	358	23	31	20	24	1.98
33258545--33258848	86	3.5	86	79	1	297	23	30	22	23	1.99
33258565--33258905	172	2.0	172	80	2	380	23	30	21	24	1.99
33259133--33259196	33	1.9	33	93	6	112	28	34	17	20	1.95
33259156--33259473	86	3.7	86	81	2	352	23	32	19	24	1.98
33259158--33259473	172	1.8	172	82	0	407	24	31	19	24	1.98
33260268--33261685	86	16.6	86	73	6	803	24	31	20	24	1.98
33266509--33266564	28	2.0	28	96	0	103	28	26	21	23	1.99
33266512--33266573	28	2.2	28	85	0	88	30	27	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182