genome.fa.s9.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  120  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38757187--38757241	21	2.6	21	85	0	74	25	12	29	32	1.93
38757781--38758003	112	2.0	111	86	0	311	26	19	13	39	1.89
38758443--38758606	49	3.4	48	82	8	163	32	12	32	21	1.91
38758528--38758807	98	2.9	99	76	7	284	36	16	27	20	1.93
38758482--38758783	49	6.2	49	80	4	256	34	15	27	21	1.94
38758786--38758901	42	2.8	42	80	5	119	39	15	25	18	1.91
38759191--38759295	41	2.5	42	87	3	149	29	28	13	28	1.94
38759225--38759303	41	1.9	41	86	2	104	31	25	16	26	1.96
38759745--38759779	18	1.9	18	88	0	52	71	5	0	22	1.07
38761871--38761902	11	2.8	12	86	13	50	78	0	3	18	0.89
38761901--38761930	6	5.0	6	100	0	60	33	0	16	50	1.46
38762564--38762714	47	3.3	47	80	6	143	28	15	21	33	1.95
38762583--38762797	42	5.0	42	78	6	119	27	14	22	35	1.93
38762678--38762806	40	3.2	42	75	8	124	26	13	22	37	1.92
38763261--38763473	112	1.9	112	86	0	300	40	13	19	26	1.88
38763785--38763840	5	11.4	5	88	5	71	0	25	0	75	0.81
38770522--38770554	16	2.0	17	88	5	50	75	0	9	15	1.03
38789088--38789126	21	1.9	21	89	5	62	12	12	7	66	1.43
38792006--38792055	25	2.0	26	88	11	77	80	0	16	4	0.87
38806175--38806207	16	2.1	16	94	5	59	45	6	6	42	1.53
38809556--38809590	17	2.0	18	88	5	54	60	11	8	20	1.57
38811017--38811050	9	4.0	9	85	14	54	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38811017--38811052	16	2.3	16	95	4	65	88	0	0	11	0.50
38815370--38815498	65	2.0	66	82	3	161	50	3	9	36	1.53
38817635--38817678	14	3.1	14	86	0	61	38	25	20	15	1.92
38817637--38817676	21	1.9	21	84	0	53	37	27	17	17	1.92
38835376--38835426	26	2.0	27	88	7	79	25	0	9	64	1.24
38837280--38837357	22	3.4	23	71	18	81	43	7	1	47	1.40
38837277--38837367	46	2.0	46	97	2	175	43	8	2	45	1.47
38837629--38837699	20	3.2	20	64	21	52	50	7	0	42	1.29
38837630--38837705	26	3.2	26	66	33	78	48	6	0	44	1.28
38840189--38840240	25	2.1	25	82	7	61	57	0	5	36	1.23
38840059--38840229	58	2.9	58	77	14	174	51	1	2	44	1.24
38844933--38844975	20	2.2	20	91	0	68	11	6	11	69	1.35
38854114--38854152	15	2.6	16	88	8	55	0	28	0	71	0.86
38854157--38854204	12	4.0	12	91	0	78	31	35	8	25	1.85
38854165--38854218	24	2.2	24	83	0	63	25	35	14	24	1.94
38854227--38854261	18	1.9	18	88	0	52	22	34	20	22	1.97
38854317--38854357	21	2.0	21	95	0	73	9	19	17	53	1.70
38854294--38854501	102	2.1	100	89	2	319	13	28	12	45	1.80
38854542--38854581	9	4.6	9	90	3	64	0	32	10	57	1.32
38869239--38869386	47	3.1	47	69	12	129	35	18	19	25	1.95
38869381--38869560	50	3.6	51	69	10	145	37	19	16	27	1.93
38869381--38870128	101	7.4	101	81	4	751	37	18	16	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38869382--38870142	202	3.8	200	84	3	911	38	18	16	26	1.92
38869382--38870145	303	2.5	299	84	2	976	38	18	16	27	1.92
38874234--38874283	17	2.9	17	76	8	57	32	6	10	52	1.59
38874235--38874309	34	2.2	34	82	0	96	33	5	8	53	1.53
38874977--38875030	21	2.6	19	77	11	54	57	3	0	38	1.17
38876223--38876288	31	2.1	31	100	0	132	27	21	0	51	1.48
38876272--38876456	58	3.1	59	81	8	198	38	22	4	34	1.76
38876300--38876625	29	11.3	29	71	13	149	35	24	5	34	1.79
38876242--38876493	29	8.5	30	72	12	128	36	21	4	36	1.74
38876372--38876493	60	2.1	59	81	7	140	35	21	5	37	1.77
38876300--38876523	89	2.5	88	82	6	249	36	22	4	36	1.76
38876510--38876615	28	3.9	27	82	6	115	33	27	6	33	1.83
38876504--38876624	28	4.3	27	77	9	109	33	27	5	33	1.81
38876924--38877107	97	1.9	97	94	0	323	27	18	15	38	1.91
38888381--38889075	209	3.3	209	88	1	982	36	19	22	21	1.95
38889396--38889495	17	5.9	17	74	0	92	34	4	7	55	1.46
38891274--38891581	59	5.3	57	76	10	225	39	22	3	34	1.73
38891241--38891586	29	11.8	30	73	14	210	38	22	3	35	1.71
38891444--38891660	29	7.4	31	74	15	113	36	26	5	31	1.79
38892019--38892202	97	1.9	97	87	0	269	26	17	17	39	1.91
38895736--38895782	21	2.2	21	84	0	67	31	25	14	27	1.95
38896475--38896513	19	2.1	19	95	0	69	25	25	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38896482--38896542	19	3.2	19	85	0	86	22	21	18	37	1.94
38904063--38904139	22	2.9	29	72	25	96	49	9	3	37	1.53
38904663--38904795	68	1.9	71	84	6	182	37	18	15	28	1.91
38908580--38908618	13	3.0	13	100	0	78	53	7	30	7	1.57
38912238--38912398	23	6.9	23	82	6	166	42	22	23	11	1.86
38918168--38918304	23	6.0	23	85	3	170	42	24	23	10	1.85
38924073--38924209	23	6.0	23	81	3	143	41	22	24	11	1.87
38924052--38924221	46	3.7	47	75	10	154	40	21	25	12	1.88
38924052--38924221	23	7.3	24	79	9	133	40	21	25	12	1.88
38926922--38926946	12	2.1	12	100	0	50	56	16	8	20	1.65
38927834--38927923	29	3.1	29	95	0	162	33	3	27	35	1.74
38932392--38932430	15	2.7	15	88	4	53	56	0	7	35	1.28
38933810--38934054	110	2.2	110	79	5	271	24	21	21	31	1.98
38936334--38936400	29	2.3	29	81	0	98	50	10	1	37	1.46
38936614--38936652	17	2.3	16	86	8	51	33	5	0	61	1.18
38945112--38945170	31	2.0	29	83	9	75	69	5	3	22	1.23
38956767--38956792	7	3.7	7	100	0	52	0	26	0	73	0.84
38973348--38973385	20	1.9	20	88	0	58	31	2	15	50	1.58
38995703--38996134	43	10.1	43	79	2	411	27	25	17	29	1.97
38995711--38996137	86	5.0	84	80	5	455	26	25	18	29	1.98
38995703--38996133	129	3.4	129	82	2	510	27	24	17	29	1.97
38996410--38996536	66	1.9	66	81	0	155	13	28	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38997981--38998139	78	2.0	78	95	0	282	24	13	16	44	1.85
38998389--38998449	30	2.0	30	84	6	79	37	0	6	55	1.26
38999240--38999269	16	1.9	16	93	6	53	16	13	0	70	1.18
39000063--39000124	30	2.1	30	100	0	124	32	9	16	41	1.80
39002250--39002286	6	6.0	6	87	6	56	16	2	0	81	0.81
39002250--39002295	13	3.5	13	83	16	60	17	2	0	80	0.81
39005628--39005657	16	1.9	16	93	6	53	16	13	0	70	1.18
39005624--39005683	22	2.8	22	87	7	70	15	10	1	73	1.17
39005637--39005683	21	2.2	22	92	3	78	14	8	2	74	1.15
39009104--39009304	24	8.4	24	90	0	303	26	22	22	28	1.99
39026592--39026624	3	11.0	3	100	0	66	66	0	33	0	0.92
39027273--39027349	40	1.9	41	86	2	111	24	19	14	41	1.89
39027272--39027364	40	2.3	39	82	8	107	22	20	13	43	1.87
39028592--39028809	41	5.3	41	85	3	269	16	24	16	42	1.88
39028588--39028809	83	2.7	84	81	5	274	15	24	16	42	1.87
39028752--39028846	39	2.4	40	85	5	122	18	20	15	45	1.86
39031174--39031240	29	2.3	29	84	5	82	26	7	31	34	1.84
39031192--39031639	29	15.4	29	74	14	286	33	4	26	35	1.77
39031192--39031632	58	7.6	58	78	8	339	33	4	26	35	1.77
39031432--39031670	59	4.1	58	75	17	192	33	2	25	38	1.69
39033541--39033608	17	4.0	17	76	0	73	55	4	4	35	1.40
39034122--39034421	160	1.9	160	90	1	476	22	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39034578--39034921	161	2.1	161	86	1	483	23	21	17	37	1.94
39034070--39034939	370	2.4	364	82	7	983	22	21	17	37	1.94
39035020--39035563	39	14.0	39	74	7	354	25	20	30	23	1.98
39035032--39035563	78	6.8	78	84	3	608	25	20	30	23	1.99
39035566--39035685	41	2.8	43	81	5	154	34	19	14	32	1.91
39035844--39035938	50	1.9	49	89	2	145	13	34	17	33	1.90
39035828--39035949	49	2.5	49	84	1	163	15	33	13	36	1.87
39036883--39036964	6	13.2	6	73	14	60	4	15	0	79	0.90
39036885--39036965	7	11.7	7	78	10	78	4	14	0	80	0.88
39036885--39036964	13	5.8	14	74	14	69	5	15	0	80	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182