genome.fa.s9.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  124  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39647311--39647372	9	6.6	9	76	9	61	56	4	3	35	1.37
39648174--39648248	20	4.0	20	68	26	65	37	1	0	61	1.05
39648175--39648241	16	3.9	16	73	21	55	35	1	0	62	1.04
39648188--39648246	30	2.0	30	86	0	82	37	1	0	61	1.07
39648208--39648304	10	9.6	10	69	13	65	37	2	5	55	1.34
39648980--39649021	16	2.6	16	78	14	50	57	2	2	38	1.25
39649666--39649718	25	2.2	22	80	12	52	69	0	7	22	1.13
39649713--39649773	23	2.4	25	81	13	63	54	0	1	44	1.10
39649730--39649783	29	2.0	26	82	10	63	53	0	1	44	1.11
39650725--39650792	6	11.0	6	74	13	50	45	0	2	51	1.16
39650734--39650792	17	3.6	16	78	15	59	42	0	3	54	1.17
39652576--39652676	30	3.4	28	80	10	103	40	27	2	28	1.71
39659148--39659182	15	2.3	15	90	0	52	34	17	14	34	1.90
39659551--39659590	16	2.6	15	80	7	53	40	2	2	55	1.27
39660372--39660403	16	2.0	16	93	0	55	46	6	15	31	1.71
39663633--39663659	7	3.9	7	100	0	54	29	0	44	25	1.54
39667765--39667830	28	2.4	27	78	16	73	60	1	1	36	1.15
39667720--39667948	9	24.1	9	71	17	103	59	3	2	35	1.25
39667751--39667845	10	10.1	10	71	13	51	62	3	1	33	1.18
39667720--39667948	19	12.1	18	68	20	103	59	3	2	35	1.25
39667794--39667948	28	5.3	27	71	17	60	57	2	1	38	1.24
39667851--39667938	20	4.5	20	73	19	62	57	2	2	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39667881--39667931	10	5.3	10	80	19	56	58	3	0	37	1.16
39668638--39669016	9	39.1	9	66	17	113	34	2	5	57	1.36
39668725--39669017	10	30.0	10	64	16	64	34	2	6	56	1.38
39668772--39668848	19	3.9	19	75	13	59	33	5	6	54	1.48
39668965--39669016	19	2.8	18	78	18	61	38	0	1	59	1.08
39668931--39668994	31	2.1	31	82	5	76	29	1	7	60	1.34
39674762--39674849	46	1.9	46	85	0	122	30	11	18	39	1.86
39675105--39675155	20	2.7	18	80	14	57	41	13	7	37	1.74
39683284--39683315	12	2.7	12	90	0	55	15	43	0	40	1.47
39683317--39683357	18	2.2	20	86	8	59	0	31	0	68	0.90
39683374--39683430	12	4.5	12	79	12	69	0	29	3	66	1.08
39683470--39683521	12	4.1	12	74	13	50	0	32	3	63	1.12
39683574--39683861	3	95.7	3	63	20	68	4	32	2	61	1.27
39683575--39683828	12	19.4	12	66	22	86	3	32	2	61	1.25
39683371--39683868	198	2.5	197	87	5	704	5	33	2	59	1.32
39683360--39683862	102	5.1	98	86	6	631	4	33	2	58	1.32
39683986--39684027	16	2.5	17	80	7	50	2	26	0	71	0.98
39683992--39684025	13	2.5	14	90	4	52	2	26	0	70	1.01
39687862--39687892	13	2.3	14	94	5	55	64	0	0	35	0.94
39689244--39689285	16	2.8	16	85	7	52	4	28	0	66	1.12
39689245--39689307	19	3.3	19	80	8	65	3	28	1	66	1.16
39689248--39689340	36	2.7	33	74	14	91	6	29	1	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39689453--39689688	114	2.1	114	93	1	402	7	31	1	59	1.35
39689501--39689725	114	2.0	114	81	3	265	10	32	2	54	1.46
39690473--39690516	23	1.9	23	82	17	56	36	4	0	59	1.18
39691794--39691835	22	1.9	22	85	9	59	71	4	4	19	1.22
39702677--39702702	8	3.2	8	100	0	52	61	0	38	0	0.96
39704179--39704229	26	2.0	26	96	0	93	43	0	5	50	1.26
39706233--39706283	15	3.3	15	82	15	52	37	7	5	49	1.56
39710936--39710991	20	2.8	20	81	5	60	35	25	7	32	1.83
39713429--39713461	16	2.1	16	100	0	66	45	12	6	36	1.66
39713615--39713668	20	2.7	20	85	0	63	27	25	11	35	1.90
39713831--39713869	20	2.0	20	85	10	53	28	28	7	35	1.85
39719656--39720356	349	2.0	349	95	0	1251	36	18	11	32	1.88
39720975--39721026	18	2.8	18	94	2	86	23	26	19	30	1.98
39726992--39727038	22	2.1	21	84	7	58	48	2	0	48	1.13
39730924--39730992	19	3.7	18	81	11	68	62	2	1	33	1.19
39734868--39734893	2	13.0	2	100	0	52	50	0	0	50	1.00
39734975--39735004	16	1.9	16	93	6	53	46	0	6	46	1.29
39735755--39735779	2	12.5	2	100	0	50	48	0	0	52	1.00
39736658--39736709	22	2.3	22	86	3	68	30	5	1	61	1.30
39743018--39743087	34	2.1	34	91	5	115	17	50	5	27	1.68
39748773--39748828	27	2.1	26	93	3	94	26	7	14	51	1.67
39749491--39749536	21	2.2	21	100	0	92	47	4	13	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39750372--39750417	21	2.2	21	84	7	58	45	6	2	45	1.41
39750390--39750423	4	8.2	4	87	6	50	47	2	2	47	1.32
39751780--39751811	16	2.0	16	100	0	64	31	0	0	68	0.90
39753376--39753611	92	2.6	90	84	4	314	33	13	15	38	1.86
39754430--39754458	9	3.3	9	95	4	51	34	0	0	65	0.93
39764685--39764740	28	2.0	28	100	0	112	39	14	25	21	1.91
39768348--39768377	3	10.0	3	92	0	51	63	0	3	33	1.11
39770945--39771025	27	3.0	27	100	0	162	22	18	11	48	1.79
39778786--39778818	14	2.3	15	89	5	50	15	21	0	63	1.30
39800753--39800854	31	3.4	29	76	12	100	61	2	0	34	1.17
39805259--39805289	12	2.6	12	100	0	62	25	22	16	35	1.94
39805979--39806333	30	12.0	29	80	9	337	37	24	0	37	1.60
39806005--39806333	118	2.8	117	82	5	387	37	24	0	37	1.59
39817077--39817323	39	6.3	39	75	5	221	23	32	18	25	1.97
39817115--39817365	78	3.2	77	85	3	315	23	31	19	25	1.98
39817077--39817298	117	1.9	117	82	1	275	22	31	19	26	1.98
39817077--39817323	117	2.1	117	79	3	255	23	32	18	25	1.97
39817233--39817359	39	3.3	38	69	16	98	22	31	18	26	1.97
39817116--39817393	78	3.6	78	83	1	281	23	32	19	25	1.98
39817909--39817986	42	1.9	40	92	5	129	43	7	2	46	1.46
39819431--39819780	30	11.9	30	74	9	231	35	23	1	38	1.65
39821392--39821449	9	6.4	9	73	15	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39821385--39821465	36	2.2	37	93	2	137	53	0	0	46	1.00
39821404--39821469	20	3.5	19	70	17	66	53	0	0	46	1.00
39823896--39823935	21	1.9	21	94	0	71	30	10	25	35	1.88
39844464--39844493	15	2.0	15	100	0	60	20	20	13	46	1.83
39848811--39848871	28	2.2	28	93	0	104	62	11	8	18	1.53
39863711--39863753	18	2.4	17	81	11	59	18	48	13	18	1.80
39866846--39866935	24	3.8	24	89	2	128	25	24	21	28	1.99
39870124--39870204	26	3.0	25	79	15	74	22	2	3	71	1.14
39872501--39872526	13	2.0	13	100	0	52	46	23	0	30	1.53
39877948--39877992	21	2.1	22	91	4	74	17	13	2	66	1.34
39877957--39877987	15	2.1	15	93	0	53	16	12	3	67	1.35
39879373--39879418	23	2.0	23	86	0	65	34	19	13	32	1.90
39885563--39885596	10	3.4	10	87	0	50	70	2	26	0	1.01
39889049--39889310	58	4.6	57	81	5	271	36	4	26	32	1.77
39889097--39889466	59	6.3	58	79	10	221	37	3	25	32	1.74
39889092--39889474	30	13.1	29	74	13	225	36	3	26	33	1.75
39889211--39889466	89	2.9	88	77	9	234	38	3	24	33	1.72
39891078--39891132	17	3.4	17	76	16	55	49	1	1	47	1.23
39891087--39891129	18	2.4	19	80	11	54	48	2	2	46	1.27
39891751--39891955	86	2.4	86	90	1	313	23	23	18	35	1.96
39891853--39892238	205	1.9	205	88	3	580	22	22	19	34	1.96
39892344--39892489	78	1.9	78	82	2	186	28	19	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39892751--39892938	49	3.8	49	87	4	245	13	27	21	36	1.92
39892738--39892942	98	2.1	98	85	3	270	14	28	20	37	1.91
39892927--39893294	51	7.3	51	67	9	207	13	22	21	42	1.87
39892935--39893307	101	3.7	101	85	0	478	12	23	21	43	1.86
39894194--39894265	6	11.5	6	81	11	65	1	12	2	83	0.82
39894194--39894260	7	9.3	7	77	16	57	1	11	2	83	0.82
39895074--39895103	15	2.0	15	93	0	51	0	16	0	83	0.65
39899248--39899409	28	5.7	27	71	21	100	37	2	27	32	1.70
39899251--39899440	57	3.3	57	85	1	254	38	2	25	32	1.70
39899251--39899473	57	3.9	57	80	8	227	40	3	25	30	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182