genome.fa.s9.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  27  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931569--10931618	17	2.9	17	78	21	59	36	2	2	60	1.20
10933787--10933820	2	17.0	2	100	0	68	50	0	0	50	1.00
10937614--10938027	41	10.1	41	75	5	223	25	21	14	38	1.92
10937756--10937868	39	2.8	40	87	1	147	21	15	19	43	1.88
10937882--10938074	41	4.7	41	77	5	176	24	25	13	35	1.93
10937882--10938076	82	2.4	82	85	2	250	25	25	13	35	1.93
10937796--10938135	123	2.8	121	70	7	308	24	21	15	38	1.92
10943620--10943707	40	2.2	40	87	0	122	21	17	22	38	1.93
10949211--10949298	40	2.2	40	87	0	122	21	17	22	38	1.93
10952291--10952335	21	2.1	21	83	0	54	33	6	2	57	1.37
10952465--10952660	60	3.3	60	83	5	218	24	13	11	51	1.73
10952877--10952994	31	3.9	30	80	15	145	55	10	9	25	1.63
10952808--10952994	89	2.1	90	83	5	227	51	12	10	25	1.72
10952888--10952973	28	3.0	28	82	5	100	56	9	9	24	1.60
10953810--10953844	17	2.1	17	89	5	54	5	5	11	77	1.12
10955269--10955334	24	2.8	24	100	0	132	21	12	18	48	1.80
10959745--10959790	23	2.0	24	87	12	69	34	4	0	60	1.16
10959817--10959864	19	2.5	19	83	10	62	29	2	4	64	1.23
10959838--10959886	21	2.3	22	75	3	55	30	4	2	63	1.24
10964857--10964913	17	3.4	16	72	13	53	40	1	0	57	1.09
10965694--10965738	22	2.0	23	83	12	58	68	0	0	31	0.89
10966521--10966585	30	2.2	31	81	10	73	50	4	3	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966573--10966606	15	2.2	16	89	5	52	67	0	0	32	0.91
10969147--10969196	22	2.3	21	80	10	55	54	8	0	38	1.30
10969760--10969817	27	2.1	27	80	0	62	67	13	3	15	1.36
10970368--10970416	23	2.1	23	85	7	64	57	18	4	20	1.57
10972015--10972044	14	2.1	15	93	6	53	23	0	0	76	0.78
10980485--10980515	2	15.5	2	100	0	62	48	0	0	51	1.00
10984080--10984318	51	4.6	51	86	2	309	28	23	15	33	1.95
10986813--10986861	4	12.0	4	79	12	55	67	0	32	0	0.91
10986808--10986861	23	2.3	24	81	6	67	66	0	33	0	0.92
10989848--10989927	35	2.3	35	93	0	133	47	18	0	33	1.49
10989900--10989940	21	2.0	20	95	4	73	60	14	0	24	1.34
10990299--10990341	12	3.1	14	80	19	54	0	34	0	65	0.93
10993414--10993528	58	2.0	58	86	6	162	47	16	0	35	1.47
10994260--10994391	65	2.0	65	97	0	246	40	8	29	21	1.83
11013259--11013341	31	2.7	32	75	5	98	45	2	2	49	1.28
11014303--11014349	22	2.1	23	84	7	62	36	2	6	55	1.37
11014938--11014971	15	2.3	15	90	5	52	35	2	2	58	1.28
11015788--11015816	14	2.1	14	100	0	58	20	20	13	44	1.85
11020862--11020897	16	2.2	16	90	0	54	63	19	0	16	1.30
11034086--11034118	15	2.1	16	88	5	50	42	3	6	48	1.43
11035564--11035654	37	2.5	37	100	0	182	27	12	30	29	1.92
11035990--11036033	19	2.3	19	84	7	54	36	2	2	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11046932--11046985	24	2.3	24	93	3	92	5	29	22	42	1.76
11051571--11051597	2	13.5	2	100	0	54	51	0	0	48	1.00
11052585--11052655	22	3.2	22	76	4	70	57	1	0	40	1.07
11058717--11058773	15	3.5	15	71	17	51	49	1	1	47	1.22
11059024--11059070	15	3.3	14	80	11	51	65	0	2	31	1.04
11059040--11059084	21	2.1	21	84	8	56	62	2	0	35	1.08
11061043--11061075	2	16.0	2	93	6	57	48	0	3	48	1.17
11062142--11062180	21	1.9	20	84	5	51	25	20	2	51	1.60
11074996--11075023	9	3.1	9	100	0	56	0	53	25	21	1.46
11079583--11079633	23	2.3	22	80	12	59	45	1	9	43	1.48
11082360--11082395	14	2.6	14	86	4	56	30	11	11	47	1.74
11086901--11086925	12	2.1	12	100	0	50	24	60	16	0	1.36
11092358--11092401	20	2.3	18	84	11	52	65	2	25	6	1.28
11092499--11092540	20	2.1	20	86	8	59	69	2	26	2	1.13
11092500--11092558	25	2.5	25	81	13	72	69	1	25	3	1.13
11096740--11096766	2	13.5	2	100	0	54	51	0	0	48	1.00
11098026--11098072	25	1.9	24	83	12	60	59	10	0	29	1.31
11099086--11099121	2	18.0	2	100	0	72	50	0	0	50	1.00
11113819--11113882	28	2.3	28	81	10	78	43	1	3	51	1.26
11116797--11116835	14	2.7	15	88	8	62	56	0	0	43	0.99
11116981--11117026	23	2.0	24	82	4	58	54	4	0	41	1.20
11118818--11118861	20	2.3	19	88	4	61	25	0	2	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11123338--11123363	6	4.3	6	100	0	52	0	30	53	15	1.42
11123833--11123871	20	1.9	21	94	5	71	2	20	5	71	1.17
11126312--11126423	48	2.3	48	76	3	127	30	19	21	28	1.98
11131470--11131602	43	3.1	43	96	0	248	38	25	9	27	1.86
11132721--11132751	15	2.1	15	93	0	53	80	3	16	0	0.83
11133123--11133172	16	3.0	16	79	5	55	52	0	2	46	1.12
11133196--11133229	18	1.9	18	94	5	61	58	0	0	41	0.98
11145935--11145967	5	6.6	5	100	0	66	18	0	60	21	1.36
11149968--11149998	3	10.7	3	93	6	55	32	0	0	67	0.91
11154156--11154207	25	2.1	24	82	10	61	61	3	1	32	1.25
11155659--11155716	18	3.2	18	82	4	73	46	0	0	53	1.00
11160479--11160530	27	1.9	27	85	14	72	55	7	17	19	1.65
11160659--11161264	59	10.3	59	81	5	609	35	2	28	33	1.71
11160782--11161168	30	13.2	30	65	22	162	34	1	28	34	1.68
11160656--11161259	177	3.4	173	82	5	687	35	2	28	33	1.71
11161718--11161742	12	2.1	12	100	0	50	8	8	0	84	0.79
11162362--11162391	14	2.1	14	93	0	51	36	3	0	60	1.14
11163032--11163063	14	2.2	15	94	5	57	25	6	18	50	1.70
11163425--11163688	60	4.4	58	77	10	223	30	20	14	35	1.92
11163422--11163656	117	2.0	117	82	8	291	30	19	15	34	1.93
11163464--11163689	61	3.8	59	81	10	239	32	19	13	35	1.90
11164653--11164805	23	6.5	23	77	8	139	43	21	24	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11164679--11164805	48	2.7	46	82	9	150	44	22	23	10	1.83
11165404--11165437	11	3.2	11	83	8	52	35	8	0	55	1.31
11168588--11168634	2	23.5	2	100	0	94	48	0	0	51	1.00
11169454--11169797	62	5.8	60	75	10	323	36	13	19	30	1.91
11169482--11169798	114	2.7	117	78	12	317	36	12	18	31	1.89
11169454--11169782	176	1.9	176	83	5	436	37	14	20	28	1.91
11179034--11179063	15	1.9	16	93	6	53	56	6	0	36	1.26
11182735--11182912	95	1.9	94	88	1	266	39	12	13	34	1.82
11189633--11189669	18	2.1	18	89	0	56	48	0	27	24	1.51
11199052--11199092	18	2.3	19	79	12	50	36	4	2	56	1.34
11199977--11200026	26	1.9	26	95	0	91	62	12	2	24	1.40
11200297--11200369	22	3.1	25	74	22	93	38	12	6	42	1.69
11200278--11200369	46	2.0	46	97	0	175	39	14	6	40	1.71
11202975--11203038	24	2.7	24	100	0	128	23	9	14	53	1.69
11207966--11208008	20	2.2	20	91	0	68	30	13	13	41	1.84
11208456--11208525	29	2.4	30	80	4	72	51	2	1	44	1.25
11211133--11211191	29	2.0	29	80	6	66	45	16	3	33	1.64
11211593--11211652	29	2.1	29	81	3	68	31	10	0	58	1.31
11213586--11213620	17	2.1	17	94	0	61	51	5	11	31	1.61
11213931--11214006	21	3.4	21	68	16	55	39	1	7	51	1.39
11214328--11214514	93	2.0	93	97	0	356	44	18	6	29	1.76
11230446--11230471	1	26.0	1	100	0	52	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11244003--11244249	128	1.9	129	84	4	329	31	19	11	38	1.87
11244926--11244977	17	3.3	17	79	12	58	30	0	1	67	1.02
11251266--11251297	13	2.5	13	94	0	55	65	3	0	31	1.08
11257336--11257393	21	2.7	21	69	12	55	68	1	15	13	1.28
11257583--11257625	18	2.4	18	84	0	59	11	9	2	76	1.10
11261036--11261077	19	2.2	19	87	8	59	28	2	0	69	1.01
11263177--11263217	20	2.0	20	100	0	82	4	24	19	51	1.66
11284983--11285032	23	2.2	23	88	0	73	42	14	14	30	1.84
11285548--11285578	5	6.2	5	100	0	62	80	0	0	19	0.71
11291496--11291601	43	2.5	42	80	6	97	12	3	15	68	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182