genome.fa.s9.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  144  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44444556--44444588	16	2.1	16	100	0	66	42	12	12	33	1.79
44446904--44447039	53	2.6	53	86	1	184	26	15	24	33	1.95
44448153--44448216	29	2.2	29	94	0	110	28	6	18	46	1.73
44448210--44448264	28	1.9	28	85	3	74	20	5	23	50	1.68
44453931--44453968	13	2.8	13	85	14	51	36	0	63	0	0.95
44453931--44453968	20	1.9	20	94	0	67	36	0	63	0	0.95
44454093--44454130	13	2.8	13	85	14	51	36	0	63	0	0.95
44454093--44454130	20	1.9	20	94	0	67	36	0	63	0	0.95
44453862--44454187	162	2.0	161	98	0	634	35	10	33	20	1.86
44455265--44455306	7	6.0	7	91	0	57	4	40	23	30	1.75
44462987--44463017	4	7.8	4	100	0	62	25	0	22	51	1.48
44468679--44468762	22	3.8	22	79	0	78	11	9	15	63	1.52
44471517--44471709	94	2.1	93	92	1	314	43	6	7	43	1.57
44485368--44485421	21	2.6	21	76	5	56	31	24	12	31	1.93
44487547--44487840	149	2.0	148	86	6	407	35	14	17	32	1.90
44488384--44488660	60	4.6	59	76	10	233	35	3	28	31	1.75
44488458--44488551	30	3.2	29	71	15	93	37	2	31	28	1.69
44488387--44488659	122	2.3	118	80	6	307	35	3	28	31	1.75
44490678--44490717	17	2.4	17	86	0	53	52	2	5	40	1.37
44496246--44496294	22	2.2	22	96	0	89	36	20	6	36	1.78
44496832--44496991	52	3.0	53	90	5	245	25	18	7	48	1.74
44496925--44497074	67	2.2	69	87	3	214	24	22	10	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44497045--44497094	18	2.8	18	84	0	64	26	32	12	30	1.92
44496979--44497136	85	1.9	85	95	0	289	26	22	10	40	1.86
44497774--44498057	141	2.1	134	93	5	480	33	8	11	46	1.70
44499678--44499786	50	2.2	48	91	3	173	16	8	22	53	1.69
44500259--44500367	49	2.2	49	95	0	191	16	8	22	53	1.69
44499131--44500755	590	2.8	590	90	5	2499	23	11	16	48	1.78
44503020--44503117	48	2.0	49	84	2	126	17	10	17	55	1.69
44503374--44503471	48	2.0	49	84	2	126	15	11	19	54	1.71
44502879--44504249	354	4.0	355	89	4	2033	23	14	15	46	1.83
44503726--44503821	48	2.0	49	85	2	131	17	7	18	56	1.64
44502879--44504249	706	2.0	683	90	4	2131	23	14	15	46	1.83
44504523--44504559	18	2.1	18	90	5	58	10	5	18	64	1.43
44506839--44506885	21	2.2	21	100	0	94	63	4	27	4	1.31
44507048--44507117	17	4.2	17	81	1	79	41	4	2	51	1.36
44507705--44507775	9	7.2	9	73	16	52	52	1	0	46	1.09
44507744--44507815	26	2.9	25	73	21	71	54	0	4	41	1.20
44508861--44509114	61	4.2	58	79	10	212	38	22	1	38	1.64
44508952--44509349	59	6.8	59	80	6	364	36	23	4	35	1.75
44508847--44509231	30	13.0	29	73	14	195	36	23	3	36	1.72
44508848--44509349	30	17.0	30	71	14	158	36	24	3	35	1.74
44509101--44509349	29	8.5	29	71	16	156	35	24	6	33	1.80
44509516--44509541	13	2.0	13	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44515110--44515143	15	2.3	15	89	0	50	50	32	2	14	1.58
44515165--44515230	11	6.0	11	70	0	51	24	28	19	27	1.99
44515280--44515336	21	2.7	21	81	5	62	22	22	21	33	1.97
44515292--44515335	14	3.1	14	76	0	52	22	25	20	31	1.98
44516371--44516413	3	14.7	3	87	4	61	27	2	2	67	1.15
44517018--44517050	17	1.9	17	100	0	66	0	18	0	81	0.68
44517629--44517719	13	6.9	13	82	7	87	18	23	19	38	1.93
44517613--44517729	20	5.6	20	77	15	119	17	23	20	38	1.93
44517616--44517719	33	3.2	33	87	0	154	18	23	20	38	1.93
44518776--44518821	3	15.3	3	91	8	76	32	0	0	67	0.91
44519587--44519617	3	10.3	3	92	0	53	35	0	35	29	1.58
44519649--44519747	31	3.5	27	86	10	128	48	1	0	50	1.07
44519654--44519740	29	3.2	26	71	25	72	49	1	0	49	1.08
44522699--44522729	3	10.3	3	100	0	62	64	0	0	35	0.94
44524756--44524805	26	1.9	26	91	0	82	50	2	26	22	1.60
44524761--44524812	26	2.0	26	88	0	77	51	3	26	17	1.62
44527319--44527368	26	1.9	26	87	0	73	30	0	12	58	1.34
44530228--44530261	17	2.0	17	94	0	59	55	2	0	41	1.15
44533920--44533950	15	2.0	16	93	6	55	58	0	0	41	0.98
44534234--44534268	18	1.9	18	88	0	52	51	11	0	37	1.38
44535817--44535850	3	11.3	3	93	0	59	67	2	0	29	1.05
44536125--44536166	14	2.9	14	92	3	66	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44536336--44536390	21	2.7	19	79	20	58	60	3	0	36	1.15
44543477--44543523	21	2.2	21	80	0	58	31	4	0	63	1.13
44546910--44546948	20	2.0	20	89	0	60	56	5	2	35	1.35
44549049--44549118	29	2.5	28	84	15	92	34	0	2	62	1.10
44561620--44561656	17	2.2	17	95	0	65	18	21	0	59	1.38
44566770--44566812	17	2.5	17	84	3	59	20	23	2	53	1.57
44567007--44567041	3	11.7	3	93	0	61	62	0	2	34	1.10
44569060--44569203	60	2.5	57	83	9	179	25	7	9	58	1.55
44569423--44569502	31	2.6	31	84	2	99	51	8	10	30	1.66
44572243--44572287	22	2.0	22	86	0	63	62	15	8	13	1.54
44574761--44574794	18	1.9	17	88	5	50	38	11	20	29	1.88
44603609--44603986	172	2.2	172	80	4	415	25	12	25	36	1.91
44608127--44608464	172	2.0	171	80	6	380	28	13	23	35	1.92
44608979--44609020	21	2.0	21	100	0	84	47	14	14	23	1.80
44613099--44613128	14	2.1	14	100	0	60	20	6	30	43	1.77
44621144--44621200	21	2.7	21	81	8	62	31	28	15	24	1.96
44624322--44624363	21	2.0	22	95	4	77	23	11	4	59	1.51
44651836--44652052	112	1.9	112	88	0	326	28	21	12	37	1.90
44652631--44652972	50	6.9	50	70	11	233	36	19	28	15	1.92
44652594--44652972	99	3.9	98	78	5	424	36	18	29	16	1.93
44652585--44652937	196	1.8	196	89	1	555	36	19	28	15	1.92
44653097--44653159	21	3.0	20	72	17	65	38	14	28	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44653295--44653884	42	14.6	42	80	8	670	30	25	17	26	1.97
44653302--44653884	81	7.2	81	85	3	746	29	26	16	27	1.97
44660017--44660070	26	2.1	26	83	10	67	37	1	20	40	1.63
44660378--44660518	30	4.6	30	86	3	167	44	21	2	31	1.64
44660363--44660511	60	2.5	62	82	7	189	44	20	2	32	1.63
44670761--44670840	43	1.9	41	84	5	106	43	13	30	12	1.81
44671732--44671842	50	2.2	50	91	0	186	35	19	26	18	1.95
44671897--44672111	39	5.5	39	87	3	288	33	24	15	26	1.95
44673834--44673978	30	4.9	30	86	7	197	43	19	1	35	1.60
44676916--44676986	37	1.9	37	85	5	99	28	18	14	39	1.89
44692875--44692909	16	2.1	17	89	5	54	42	11	2	42	1.55
44693055--44693104	22	2.3	22	96	0	91	56	4	4	36	1.37
44699642--44699708	32	2.1	32	97	0	125	55	13	2	28	1.53
44699750--44699804	23	2.4	23	93	0	92	25	25	23	25	2.00
44701360--44701394	16	2.2	16	100	0	70	34	0	54	11	1.37
44701506--44701542	16	2.3	17	86	9	51	75	0	8	16	1.02
44701528--44701552	12	2.1	12	100	0	50	68	0	16	16	1.22
44701538--44701585	23	2.1	23	88	0	69	72	4	4	18	1.17
44704754--44704787	17	2.0	17	88	0	50	64	5	5	23	1.38
44705798--44706064	30	8.9	30	88	2	349	34	3	23	37	1.72
44705921--44705975	19	3.3	19	63	36	54	29	3	27	40	1.73
44705809--44706064	91	2.8	90	89	2	370	35	3	22	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44706887--44706927	20	2.1	19	86	4	55	24	17	2	56	1.53
44708090--44708213	6	21.2	6	71	17	91	49	3	0	46	1.23
44708122--44708204	11	7.8	11	75	12	75	55	2	1	40	1.21
44708115--44708216	17	6.3	17	75	11	106	53	2	0	42	1.22
44708135--44708204	21	3.3	21	86	9	90	55	1	0	42	1.08
44708553--44709093	37	15.4	36	67	19	198	29	19	16	35	1.93
44708548--44709100	69	7.9	69	87	3	752	28	19	16	35	1.94
44708491--44709106	145	4.4	145	84	7	791	29	18	16	34	1.94
44708490--44709100	206	2.9	209	86	6	813	29	18	16	34	1.94
44708552--44709095	275	1.9	277	89	2	849	29	19	16	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182