genome.fa.s9.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  63  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20417022--20417368	58	6.0	58	78	7	287	35	26	3	34	1.73
20417095--20417374	29	9.7	29	73	12	200	34	25	3	35	1.75
20417061--20417368	87	3.6	87	80	6	322	35	25	3	35	1.72
20417022--20417367	116	3.0	115	78	9	321	35	26	3	34	1.74
20417022--20417426	116	3.5	112	75	12	315	35	26	4	34	1.76
20421528--20421553	12	2.2	12	100	0	52	42	15	7	34	1.75
20440610--20440878	139	1.9	139	87	1	396	22	18	25	33	1.97
20440919--20440963	21	2.0	23	83	8	58	46	2	0	51	1.13
20441260--20441311	26	2.0	26	85	7	70	36	3	3	55	1.36
20441565--20441614	21	2.4	21	78	15	59	48	0	4	48	1.20
20445246--20445278	11	3.0	11	90	0	57	69	0	0	30	0.88
20446208--20446371	30	5.6	28	73	13	98	35	23	4	36	1.76
20446271--20446394	30	4.2	29	82	11	126	35	25	4	35	1.75
20446211--20446414	59	3.5	57	77	11	166	35	23	4	36	1.75
20446287--20446394	30	3.6	30	82	8	132	34	27	3	34	1.75
20457157--20457313	84	1.9	85	83	4	210	35	16	23	24	1.95
20457241--20457332	48	1.9	48	88	0	139	36	14	23	25	1.92
20459391--20459558	30	5.6	30	82	5	171	35	25	2	36	1.71
20459398--20459561	89	1.8	89	82	2	213	35	26	2	35	1.70
20464399--20464463	29	2.3	29	79	10	73	40	3	0	56	1.15
20464678--20464707	15	2.0	15	93	0	51	26	3	0	70	1.03
20465887--20465919	11	3.0	11	90	0	57	21	15	0	63	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20467627--20467682	26	2.2	26	90	0	85	42	10	30	16	1.82
20467634--20467689	26	2.2	26	100	0	112	39	14	26	19	1.90
20471982--20472127	58	2.5	58	81	11	174	45	2	1	50	1.24
20472211--20472315	46	2.5	44	82	13	114	37	25	5	31	1.80
20472222--20472315	44	2.1	44	86	7	127	37	26	5	30	1.79
20472297--20472368	16	4.5	16	87	0	108	27	27	5	38	1.79
20473074--20473162	19	4.4	20	74	18	69	60	5	0	33	1.20
20473087--20473126	21	2.0	20	85	5	53	55	10	0	35	1.34
20475952--20476008	24	2.4	24	85	5	71	17	1	42	38	1.60
20476802--20476859	21	2.8	21	83	0	62	60	1	1	36	1.17
20476836--20476887	26	2.0	26	88	0	77	46	3	3	46	1.39
20476877--20476929	21	2.5	22	84	9	65	33	3	3	58	1.34
20476887--20476929	22	2.0	20	86	8	59	34	4	2	58	1.32
20479450--20479664	51	4.2	51	92	0	322	28	23	15	32	1.95
20484987--20485037	21	2.4	21	83	6	68	35	25	11	27	1.91
20489807--20489861	13	4.2	13	92	0	83	32	29	0	38	1.58
20499151--20499183	17	1.9	17	93	0	57	12	0	18	69	1.18
20511983--20512007	5	5.0	5	100	0	50	0	20	20	60	1.37
20517550--20517583	15	2.1	17	89	10	54	38	2	0	58	1.13
20521600--20521799	29	7.0	29	77	6	174	44	21	17	17	1.87
20521583--20521807	29	7.8	29	78	7	163	43	20	18	17	1.88
20521611--20521805	86	2.3	87	81	7	220	45	21	17	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20521600--20521807	57	3.6	57	84	0	245	43	21	17	17	1.88
20521647--20521807	57	2.8	57	89	0	250	45	22	15	15	1.84
20521869--20522108	29	8.3	29	82	0	257	46	22	10	20	1.81
20529844--20529885	18	2.4	18	80	4	50	54	11	11	21	1.68
20531054--20531084	11	2.9	11	95	4	55	0	16	0	83	0.64
20533862--20533913	21	2.5	21	81	6	61	19	9	30	40	1.83
20534308--20534506	99	2.0	99	100	0	398	30	19	13	37	1.90
20534500--20535306	148	5.4	147	88	3	1141	42	3	9	44	1.54
20536350--20536823	240	2.0	238	90	3	745	35	7	14	42	1.74
20540121--20540150	4	7.5	4	92	0	51	23	26	0	50	1.50
20547377--20547451	38	2.0	38	97	0	141	34	16	5	44	1.70
20548380--20548446	10	6.5	10	75	11	55	76	4	14	4	1.11
20548379--20548466	41	2.2	39	82	12	97	72	4	18	4	1.19
20548848--20549242	125	3.2	126	90	1	598	21	19	24	35	1.96
20548848--20549256	167	2.4	167	87	1	586	21	19	24	34	1.96
20548848--20549244	42	9.5	42	88	1	573	21	19	24	35	1.96
20549617--20549694	3	26.0	3	94	0	120	32	3	0	64	1.12
20550505--20550720	51	4.3	49	64	17	131	44	1	7	45	1.43
20550127--20550935	149	5.4	149	87	4	1123	42	3	9	44	1.55
20550170--20550935	297	2.6	296	89	3	1173	43	3	9	44	1.54
20551974--20552449	241	2.0	239	92	2	792	36	6	14	42	1.71
20554062--20554101	20	2.0	21	85	5	55	70	2	12	15	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20563168--20563296	26	5.0	26	73	3	125	28	16	26	28	1.97
20563168--20563295	52	2.5	52	85	0	166	28	16	25	28	1.97
20567369--20567416	6	8.0	6	100	0	96	33	0	0	66	0.92
20567925--20568000	31	2.5	31	86	0	98	28	13	13	44	1.81
20568230--20568339	59	1.9	59	86	3	161	51	10	10	27	1.68
20569689--20569747	31	1.9	31	82	0	73	50	10	16	22	1.75
20573504--20573541	18	2.1	18	85	9	51	50	13	10	26	1.73
20576352--20576388	18	2.1	18	89	0	56	24	27	0	48	1.51
20581991--20582337	114	3.0	117	87	6	508	47	16	10	25	1.78
20589839--20589890	18	2.7	19	77	14	54	67	17	11	3	1.36
20590616--20590678	28	2.3	27	83	8	74	42	0	36	20	1.52
20594235--20594295	13	4.6	13	76	15	63	75	1	4	18	1.06
20594235--20594294	4	14.8	4	73	16	52	75	1	5	18	1.07
20594233--20594279	17	2.8	16	84	9	67	76	2	4	17	1.04
20596465--20596524	27	2.2	27	82	8	68	21	3	5	70	1.22
20620449--20620494	10	4.3	11	86	8	60	78	0	21	0	0.76
20626770--20626829	7	8.7	7	75	3	50	36	23	21	18	1.95
20626777--20626815	20	2.0	20	89	0	60	38	25	20	15	1.92
20626767--20626829	27	2.3	27	83	8	74	39	22	20	17	1.92
20626767--20626831	14	4.8	13	81	9	67	38	21	21	18	1.93
20626848--20626877	11	2.7	11	94	0	51	20	30	33	16	1.94
20628534--20628608	38	2.0	37	94	2	132	24	17	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20634276--20634393	46	2.6	46	87	0	155	34	28	11	24	1.91
20634319--20634438	46	2.6	46	82	5	134	40	26	10	22	1.87
20637757--20637936	90	2.0	90	90	2	281	37	10	21	30	1.87
20641571--20641871	53	5.7	53	81	3	340	34	22	13	29	1.93
20641571--20641871	105	2.9	105	86	1	406	34	22	13	29	1.93
20641582--20641871	158	1.8	157	88	5	451	34	22	13	29	1.93
20648122--20648184	30	2.1	30	93	0	108	20	25	20	33	1.97
20655457--20656311	35	23.8	35	81	5	915	35	15	23	25	1.94
20655457--20656303	71	11.8	71	82	4	900	35	15	23	25	1.94
20664101--20664167	29	2.3	29	76	19	77	40	22	14	22	1.90
20664159--20664267	26	4.2	26	85	2	132	39	22	12	24	1.90
20664158--20664267	52	2.1	52	89	3	168	39	23	12	24	1.90
20665071--20665176	53	2.0	53	92	0	176	21	13	26	38	1.90
20670927--20670978	24	2.2	24	86	10	72	46	7	0	46	1.31
20671090--20671172	29	2.8	30	75	8	73	66	0	3	30	1.09
20673183--20673294	42	2.7	42	82	8	131	19	27	16	36	1.93
20673183--20673243	21	3.0	20	75	15	61	18	26	18	37	1.93
20673302--20673983	49	13.9	49	83	2	640	23	26	13	36	1.92
20674818--20674870	18	2.9	18	86	8	72	1	16	0	81	0.79
20679052--20679082	16	1.9	16	93	0	53	61	0	16	22	1.34
20679880--20679933	26	2.1	26	89	0	81	29	24	20	25	1.99
20686257--20686294	18	2.1	18	90	0	58	50	7	7	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20686586--20686616	16	1.9	16	93	0	53	35	6	9	48	1.62
20687419--20687497	11	7.2	11	70	0	59	17	8	8	64	1.47
20687419--20687497	33	2.4	34	78	6	90	17	8	8	64	1.47
20689851--20689890	16	2.5	16	87	0	53	7	30	0	62	1.23
20690660--20690742	40	2.1	39	86	2	112	28	15	15	39	1.88
20691138--20691281	53	2.7	54	80	4	141	31	33	13	21	1.92
20693452--20694767	658	2.0	658	99	0	2605	29	15	19	35	1.93
20695063--20695271	107	2.0	107	92	0	346	33	8	21	36	1.83
20695393--20695433	21	2.0	21	95	0	73	24	4	21	48	1.69
20696689--20696779	29	3.1	28	71	12	85	40	14	17	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182