genome.fa.s9.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  134  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42034879--42036135	671	1.9	670	86	3	1796	23	20	16	40	1.91
42035543--42036646	368	3.0	368	83	3	1350	22	19	16	41	1.90
42035552--42036638	491	2.2	490	85	2	1434	22	18	17	41	1.90
42036872--42037157	49	5.9	49	74	4	238	21	27	17	33	1.95
42036918--42037099	97	1.9	97	83	0	238	21	27	17	33	1.96
42037041--42037179	49	2.8	47	78	12	145	22	26	17	33	1.96
42037975--42038025	21	2.5	21	84	12	63	5	19	0	74	1.02
42043338--42043434	31	3.1	30	79	5	95	30	4	22	42	1.72
42043366--42043447	31	2.7	30	83	7	85	35	2	23	39	1.68
42045254--42045345	27	3.3	27	73	15	89	41	0	25	33	1.56
42045254--42045345	26	3.3	26	72	15	78	41	0	25	33	1.56
42045229--42045510	30	9.6	30	73	12	201	36	1	26	35	1.67
42045229--42045510	61	4.8	61	76	9	178	36	1	26	35	1.67
42046582--42046654	19	3.6	19	71	16	56	35	4	0	60	1.16
42046584--42046632	24	2.0	26	92	8	84	36	2	0	61	1.08
42046588--42046649	24	2.6	24	80	7	65	35	4	0	59	1.19
42046636--42046871	122	1.9	121	93	0	400	44	7	8	38	1.63
42047478--42047540	29	2.2	27	78	13	63	57	1	1	39	1.18
42048141--42049044	49	18.6	49	74	9	611	17	25	19	37	1.93
42048283--42049044	147	5.2	147	83	4	803	17	25	18	37	1.93
42049063--42049337	49	5.6	49	75	11	177	18	33	16	31	1.93
42049061--42049399	148	2.3	147	84	4	421	18	32	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42050309--42050377	20	3.4	20	76	11	68	0	18	2	78	0.88
42050292--42050377	7	11.6	7	71	24	61	1	18	3	76	0.99
42051234--42051266	15	2.1	16	88	5	50	3	21	0	75	0.93
42054468--42054528	22	2.8	22	85	7	72	72	3	11	13	1.24
42054494--42054523	15	1.9	16	93	6	53	70	3	13	13	1.30
42056477--42056616	28	5.0	28	81	6	169	32	20	20	27	1.97
42056480--42056621	55	2.6	56	84	4	189	30	20	19	28	1.97
42058479--42058522	20	2.1	21	87	4	63	29	6	13	50	1.68
42067621--42067657	19	1.9	19	88	0	56	54	8	2	35	1.44
42069334--42069392	25	2.5	23	79	17	59	49	11	1	37	1.50
42069347--42069391	25	1.9	24	86	13	67	44	13	2	40	1.56
42074638--42074696	31	1.9	30	83	10	75	30	11	13	44	1.80
42078504--42078552	24	2.2	20	72	24	53	26	10	6	57	1.55
42078510--42078556	24	2.0	24	100	0	94	25	8	8	57	1.57
42078514--42078568	24	2.3	24	90	0	83	25	12	10	50	1.73
42080430--42080478	24	2.0	24	96	0	89	28	10	4	57	1.50
42080430--42080494	24	2.7	24	87	0	76	27	12	7	52	1.66
42082090--42082130	19	2.1	20	86	4	57	31	19	9	39	1.84
42082371--42082409	8	4.8	8	87	6	60	23	2	10	64	1.37
42082373--42082409	17	2.2	17	95	0	65	21	2	10	64	1.37
42086223--42086276	16	3.4	16	75	10	56	40	3	25	29	1.73
42086511--42086587	39	2.0	38	82	7	93	50	5	2	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42092085--42092128	21	2.2	20	83	4	52	27	2	9	61	1.38
42093580--42093644	26	2.5	26	92	2	114	36	3	27	32	1.72
42097932--42097996	26	2.5	26	92	2	114	36	3	27	32	1.72
42105659--42105809	78	1.9	78	97	0	284	37	16	16	29	1.91
42118926--42118978	25	2.2	25	83	10	65	71	3	7	16	1.24
42122496--42122615	6	19.7	6	93	5	136	74	0	10	15	1.07
42122638--42122680	20	2.2	19	87	4	59	16	9	4	69	1.31
42125805--42125862	20	2.9	18	78	14	53	74	1	5	18	1.10
42126058--42126095	19	2.0	19	85	10	51	21	0	2	76	0.91
42128581--42128618	16	2.3	17	90	4	60	44	23	13	18	1.85
42144257--42144322	33	2.0	33	93	0	114	39	19	15	25	1.91
42149960--42150011	25	2.0	26	85	10	72	65	0	3	30	1.10
42164707--42164734	14	2.0	14	100	0	56	35	7	21	35	1.81
42167199--42167297	23	4.2	23	77	7	92	42	22	22	13	1.87
42168487--42168516	13	2.3	13	100	0	60	46	26	0	26	1.53
42180038--42180103	33	2.0	33	93	0	114	39	19	15	25	1.91
42185439--42185491	26	2.0	26	86	13	74	66	0	3	30	1.10
42204199--42204370	22	7.9	21	77	15	129	39	25	23	12	1.89
42204199--42204372	46	4.0	42	75	14	142	39	24	23	12	1.89
42205570--42205595	13	2.0	13	100	0	52	46	30	0	23	1.53
42212309--42212369	27	2.3	27	91	5	97	39	1	4	54	1.32
42214204--42214276	28	2.5	29	91	4	112	46	19	1	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42214262--42214475	29	7.5	28	68	19	115	34	26	2	36	1.71
42214261--42214481	59	3.8	56	83	7	284	34	27	2	35	1.71
42216450--42216492	21	2.1	21	87	8	63	16	6	0	76	0.99
42218740--42218782	19	2.2	20	83	4	52	16	11	20	51	1.75
42223456--42223578	17	6.9	16	71	17	66	43	1	4	51	1.30
42223463--42223578	6	20.3	6	70	13	75	43	1	4	50	1.32
42223484--42223564	11	7.2	11	76	13	67	40	2	4	51	1.37
42224378--42224411	3	11.0	3	93	6	59	67	0	0	32	0.91
42225378--42225772	29	13.6	28	70	18	222	33	30	3	32	1.76
42225375--42225745	58	6.4	58	86	2	512	33	31	3	32	1.75
42225375--42225746	117	3.2	115	89	4	561	33	31	3	32	1.75
42225375--42225796	116	3.6	115	85	6	414	32	30	4	32	1.78
42227838--42227941	37	2.8	37	85	0	145	32	34	22	10	1.88
42231801--42231852	19	2.7	20	75	6	61	30	30	25	13	1.94
42231801--42231857	20	2.9	19	75	10	53	29	29	24	15	1.96
42232350--42232437	46	1.9	46	88	6	135	26	1	2	70	1.06
42232348--42232426	9	8.8	9	75	16	67	22	1	2	73	1.03
42232634--42232675	21	2.0	21	100	0	84	42	14	14	28	1.84
42238067--42238684	82	7.5	82	89	1	837	47	10	13	28	1.75
42238823--42238932	50	2.2	50	88	0	157	53	10	4	31	1.54
42240623--42240757	31	4.5	30	73	16	109	26	13	10	49	1.74
42240691--42240757	30	2.2	31	86	7	93	29	13	8	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42240632--42240807	89	2.0	91	81	4	214	25	14	11	48	1.77
42240985--42241091	33	3.4	32	71	19	93	42	12	18	26	1.85
42240956--42241137	59	3.0	60	84	4	235	45	10	17	26	1.82
42241046--42241149	31	3.5	31	73	17	92	47	9	16	26	1.77
42242466--42242507	17	2.4	17	74	18	50	28	0	4	66	1.12
42249044--42249087	17	2.6	17	81	0	52	9	15	2	72	1.19
42252104--42252137	13	2.6	14	81	18	54	20	73	0	5	1.04
42252591--42252716	65	1.9	65	100	0	252	51	11	16	20	1.75
42258279--42258348	29	2.3	31	78	4	81	41	14	8	35	1.76
42258464--42258496	14	2.4	14	94	0	57	42	9	18	30	1.81
42258703--42258742	13	3.2	13	82	10	57	32	7	2	57	1.40
42261485--42261648	29	5.6	29	65	24	85	35	2	29	32	1.71
42261663--42261755	29	3.2	30	70	22	88	37	3	29	30	1.73
42261812--42261930	29	4.1	28	76	18	93	31	1	32	33	1.68
42261485--42261910	58	7.3	58	84	6	492	33	2	31	32	1.72
42261862--42261949	29	3.0	28	72	18	65	34	1	27	37	1.64
42261862--42261959	30	3.4	29	75	8	83	35	1	27	35	1.64
42262976--42263031	22	2.6	22	83	8	71	51	5	1	41	1.35
42263236--42263327	38	2.4	38	100	0	184	26	23	15	34	1.94
42263926--42263998	17	4.3	15	75	17	56	53	5	1	39	1.33
42263927--42263998	34	2.1	34	85	10	94	54	5	1	38	1.33
42263904--42263980	11	6.8	12	73	19	51	53	5	2	38	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42265477--42265558	41	2.0	41	92	0	137	30	26	20	21	1.98
42268664--42268888	29	7.7	29	75	10	136	39	3	24	33	1.71
42268693--42268915	29	7.6	28	74	12	130	39	2	23	34	1.67
42268693--42268940	118	2.1	117	79	8	263	38	2	23	35	1.70
42270598--42270637	21	1.9	21	94	0	71	50	7	5	37	1.53
42274600--42274660	28	2.2	27	83	13	79	29	11	26	32	1.91
42274618--42274717	28	3.5	28	71	15	78	37	7	23	33	1.81
42274765--42275043	30	9.4	30	77	9	209	35	3	25	35	1.73
42274765--42275046	59	4.8	60	79	6	247	35	3	25	35	1.73
42274765--42275013	89	2.8	88	79	10	265	35	3	25	35	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182