genome.fa.s9.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  145  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44720805--44721000	58	3.4	57	75	8	198	36	2	29	31	1.69
44720973--44721214	30	8.0	30	83	4	254	34	3	23	38	1.73
44720966--44721209	93	2.7	90	81	6	278	34	3	23	38	1.71
44722034--44722074	20	2.1	19	86	4	55	24	17	2	56	1.53
44723247--44723345	6	16.8	6	73	17	75	51	2	1	45	1.19
44723270--44723355	11	7.5	11	75	16	68	55	2	1	40	1.20
44723273--44723345	16	4.6	16	86	8	96	57	1	1	39	1.16
44723310--44723363	27	2.0	26	85	3	72	55	5	0	38	1.23
44724159--44724225	32	2.1	32	94	0	116	55	10	2	31	1.49
44724265--44724321	23	2.5	23	91	0	87	24	22	24	28	2.00
44726077--44726131	24	2.3	24	87	0	74	27	14	9	49	1.73
44728067--44728121	24	2.3	24	90	0	83	25	14	10	49	1.76
44730386--44730418	16	2.0	17	94	5	59	21	0	12	66	1.23
44730819--44730872	21	2.7	21	83	11	69	37	5	12	44	1.66
44746885--44746922	19	2.0	20	84	5	51	50	0	0	50	1.00
44751896--44751952	27	2.1	27	96	0	105	28	35	0	36	1.58
44755519--44755596	40	2.0	40	100	0	156	23	20	10	46	1.81
44763455--44763491	18	2.1	18	89	0	56	48	0	27	24	1.51
44767815--44767853	17	2.3	17	86	0	51	48	25	10	15	1.76
44777592--44777625	9	3.9	9	84	7	52	47	23	0	29	1.52
44777594--44777628	17	2.1	17	100	0	70	48	22	0	28	1.51
44781038--44781112	24	3.1	24	92	0	123	25	12	8	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44783224--44783266	7	6.1	7	100	0	86	13	0	27	58	1.37
44783396--44783443	18	2.6	19	83	9	55	47	4	0	47	1.21
44783711--44783752	16	2.7	15	79	13	50	26	26	9	38	1.87
44784758--44784802	21	2.2	20	84	4	54	42	11	2	44	1.52
44792740--44792778	19	2.1	19	95	4	71	61	0	0	38	0.96
44793872--44793914	20	2.2	20	87	8	61	72	0	0	27	0.85
44798007--44798062	29	1.9	29	88	0	85	39	12	12	35	1.81
44798146--44798193	9	5.3	9	82	9	53	56	4	0	39	1.19
44798153--44798223	19	4.2	17	67	16	58	57	4	1	36	1.27
44798163--44798264	41	2.5	41	78	9	111	59	4	2	32	1.33
44798161--44798278	10	12.0	9	69	17	67	60	5	2	32	1.32
44807519--44807562	14	3.1	14	74	6	52	36	0	4	59	1.18
44807950--44808025	29	2.5	30	79	14	86	44	10	13	31	1.77
44812921--44812964	20	2.2	20	88	8	63	75	6	0	18	1.02
44813111--44813156	22	2.0	22	84	16	58	58	4	6	30	1.43
44815268--44815303	15	2.5	15	95	4	65	33	0	16	50	1.46
44820459--44820487	9	3.2	9	100	0	58	24	10	10	55	1.65
44831535--44831566	15	2.1	16	94	5	57	25	0	0	75	0.81
44831476--44831647	60	2.8	60	83	11	194	44	0	1	52	1.15
44831458--44831623	66	2.4	72	79	15	188	37	1	1	59	1.16
44836638--44836696	6	9.0	6	80	12	55	79	1	18	0	0.81
44836618--44836689	8	8.6	8	72	17	58	80	1	13	4	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44836636--44836695	14	4.3	15	76	18	58	81	1	16	0	0.77
44836615--44836694	26	3.2	26	83	3	74	81	1	13	3	0.89
44836639--44836696	20	2.8	20	85	10	82	79	1	18	0	0.82
44837606--44838067	40	11.6	40	77	8	460	31	25	19	24	1.98
44837605--44838014	119	3.4	120	84	6	433	31	24	18	25	1.98
44837625--44838067	199	2.2	199	90	4	707	31	24	19	23	1.98
44837823--44838093	79	3.4	79	86	5	323	30	24	19	25	1.98
44838627--44838793	67	2.7	63	85	10	202	44	0	2	52	1.18
44839973--44840163	58	3.3	57	72	8	172	37	4	28	28	1.77
44840139--44840517	30	12.7	30	84	4	392	37	2	22	37	1.67
44842340--44842373	17	2.0	17	88	0	50	52	11	0	35	1.38
44842515--44843052	92	5.8	93	90	4	781	29	18	19	32	1.96
44842598--44843063	183	2.5	183	93	3	785	29	18	20	31	1.97
44842988--44843879	76	12.1	75	85	9	956	30	19	16	34	1.94
44843140--44843879	77	10.0	75	86	8	829	30	18	16	34	1.93
44842988--44843879	153	6.0	150	83	11	965	30	19	16	34	1.94
44843593--44843749	31	4.6	31	68	18	89	28	21	15	35	1.93
44843593--44843865	72	3.9	68	86	9	356	28	20	16	34	1.95
44855564--44855755	59	3.3	57	68	7	154	38	5	27	29	1.80
44855746--44856112	30	12.3	30	85	5	404	36	2	22	38	1.68
44855765--44856144	149	2.5	150	85	5	502	36	2	22	37	1.68
44857972--44858005	17	2.0	17	88	0	50	52	11	0	35	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44859519--44859552	17	2.0	17	94	0	59	41	20	0	38	1.53
44862554--44862633	15	5.6	15	69	18	55	51	1	0	47	1.08
44862553--44862663	57	1.9	58	90	3	181	46	0	0	51	1.13
44872874--44872919	19	2.3	20	82	10	51	28	0	6	65	1.17
44874112--44874153	2	21.5	2	95	4	77	52	0	0	47	1.00
44884415--44884488	9	8.2	9	70	0	58	24	32	41	1	1.63
44884424--44884495	18	4.0	18	98	0	135	26	33	38	1	1.65
44884469--44884560	39	2.4	39	86	0	121	17	33	38	10	1.85
44887854--44887894	16	2.6	16	88	0	55	0	34	0	65	0.93
44893366--44893475	58	1.9	58	82	14	138	26	11	10	51	1.69
44893697--44893835	31	4.5	31	72	11	108	46	9	16	28	1.78
44895099--44895257	29	5.4	30	78	11	125	35	3	25	35	1.74
44895099--44895232	58	2.3	58	80	10	148	35	3	26	35	1.74
44896401--44896425	3	8.3	3	100	0	50	36	0	0	64	0.94
44897130--44897203	17	4.6	16	80	11	71	48	0	4	47	1.20
44897120--44897204	6	14.3	6	71	18	54	49	0	3	47	1.18
44897158--44897199	14	2.7	15	89	10	59	54	0	4	40	1.21
44897197--44897228	11	2.9	11	100	0	64	56	6	0	37	1.25
44898400--44898434	12	2.9	12	82	0	52	2	54	0	42	1.15
44901432--44901473	21	2.0	21	85	4	57	76	2	2	19	1.01
44917910--44917949	2	20.0	2	100	0	80	50	0	0	50	1.00
44919235--44919291	29	1.9	29	85	3	78	56	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44919980--44920022	22	2.0	22	86	9	61	51	0	0	48	1.00
44920708--44920776	32	2.2	32	89	2	104	26	15	11	46	1.80
44921151--44921252	53	1.9	53	86	4	143	60	4	0	33	1.24
44921148--44921264	26	4.5	26	73	7	94	63	4	0	31	1.20
44922083--44922152	23	2.9	24	80	8	70	52	8	0	38	1.32
44928862--44928913	14	3.8	14	79	2	61	44	13	1	40	1.55
44928952--44929010	28	2.1	28	80	0	64	44	3	10	42	1.55
44929995--44930034	21	1.9	21	89	0	62	62	7	7	22	1.47
44959477--44959519	20	2.2	20	100	0	86	46	9	4	39	1.57
44959731--44959769	20	2.0	20	84	0	51	46	0	5	48	1.24
44972554--44972588	18	1.9	18	88	11	54	31	0	2	65	1.07
44974696--44974999	163	1.9	162	97	0	572	34	14	17	32	1.91
44984296--44984335	20	1.9	22	85	10	57	42	7	7	42	1.61
44985760--44985874	61	1.9	61	85	1	160	37	6	13	42	1.70
44992141--44992175	2	17.5	2	100	0	70	51	0	48	0	1.00
44993308--44993358	21	2.5	21	80	3	59	25	3	11	58	1.50
44995212--44995253	20	2.1	20	86	0	57	28	2	28	40	1.69
45005232--45005287	22	2.5	22	82	0	76	14	5	16	64	1.46
45005232--45005288	11	5.2	11	73	0	60	14	5	15	64	1.45
45008323--45008357	13	2.6	13	90	4	52	54	0	2	42	1.15
45009319--45009380	31	2.0	31	84	6	81	54	8	3	33	1.46
45016150--45016259	55	2.0	55	98	0	211	35	16	5	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45019667--45019712	18	2.6	17	87	12	67	32	2	6	58	1.36
45020055--45020097	18	2.4	18	88	7	61	46	0	0	53	1.00
45020314--45020346	2	16.5	2	100	0	66	51	0	0	48	1.00
45020653--45020686	6	5.7	6	100	0	68	85	0	0	14	0.60
45029667--45029782	58	2.0	58	94	0	205	26	9	37	25	1.87
45038189--45038221	10	3.4	10	91	8	59	69	0	0	30	0.88
45038179--45038228	9	5.4	9	79	11	57	68	0	0	32	0.90
45039046--45039087	21	2.0	21	85	0	57	33	4	2	59	1.31
45045604--45045636	16	2.0	17	88	5	50	75	0	3	21	0.93
45054246--45054290	19	2.4	19	84	0	63	42	0	2	55	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182