genome.fa.s9.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  151  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46538357--46538430	29	2.5	28	82	12	78	56	9	1	32	1.40
46538353--46538440	31	2.9	31	80	14	96	57	7	1	32	1.35
46543594--46543663	30	2.3	30	85	9	90	14	8	1	75	1.10
46547484--46547543	24	2.6	23	81	7	68	50	10	11	28	1.71
46549032--46549067	18	1.9	18	88	5	54	25	13	8	52	1.68
46550241--46550281	20	2.0	21	90	4	66	53	12	0	34	1.38
46563362--46563393	13	2.4	14	94	5	57	31	0	25	43	1.55
46563739--46563808	27	2.6	27	84	4	79	30	1	22	45	1.61
46563739--46563804	34	1.9	34	84	0	87	30	1	22	45	1.62
46574816--46574842	14	1.9	14	100	0	54	40	0	7	51	1.30
46585756--46585797	20	2.2	20	83	12	52	71	7	7	14	1.29
46585804--46585870	12	5.8	12	78	5	66	68	16	7	7	1.36
46585809--46585894	23	3.7	23	77	1	82	66	16	8	9	1.43
46585821--46585882	11	5.5	11	77	7	52	64	16	9	9	1.48
46585809--46585880	12	5.9	12	80	9	58	65	15	9	9	1.47
46585891--46585962	22	3.1	22	86	6	90	72	19	2	5	1.17
46585903--46585973	24	3.1	21	73	25	56	74	15	1	8	1.12
46587290--46587328	2	19.5	2	100	0	78	48	0	0	51	1.00
46588017--46588051	18	2.0	17	88	5	52	25	28	0	45	1.54
46588865--46588893	2	14.5	2	100	0	58	48	0	0	51	1.00
46589906--46589977	36	2.0	36	86	0	99	26	19	9	44	1.81
46596877--46597114	120	2.0	120	97	0	449	23	13	25	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46598721--46598780	22	2.7	22	94	0	102	13	18	13	55	1.70
46598718--46598783	11	6.0	11	72	0	51	13	18	13	54	1.71
46601543--46601587	6	7.5	6	97	0	81	17	20	28	33	1.95
46626780--46626956	72	2.5	73	87	3	252	42	14	23	19	1.88
46634760--46634791	15	2.1	16	94	5	57	31	0	0	68	0.90
46637389--46637417	9	3.2	9	100	0	58	58	0	0	41	0.98
46641926--46641968	23	1.9	22	85	4	59	4	11	16	67	1.38
46643366--46643489	59	2.1	59	80	8	137	43	15	13	27	1.84
46646254--46646298	20	2.1	22	88	8	67	44	4	2	48	1.35
46648341--46648388	16	3.1	15	82	17	62	70	0	0	29	0.87
46648340--46648388	15	3.1	16	88	8	73	71	0	0	28	0.86
46649050--46649257	102	2.0	102	94	0	362	23	23	18	34	1.96
46652422--46652475	23	2.3	23	84	6	65	38	12	5	42	1.67
46655470--46655507	6	6.5	6	87	6	60	47	0	31	21	1.51
46656477--46656533	29	2.0	29	85	0	78	22	5	12	59	1.53
46657095--46657141	20	2.4	19	82	10	58	31	2	4	61	1.27
46657112--46657139	10	2.8	10	100	0	56	28	0	7	64	1.20
46660810--46660852	22	2.0	22	81	9	52	58	6	11	23	1.57
46673173--46673220	23	2.1	22	85	11	62	39	8	12	39	1.73
46673505--46673535	12	2.6	12	100	0	62	19	0	0	80	0.71
46673922--46673951	3	10.0	3	92	0	51	66	3	0	30	1.07
46673922--46673986	12	5.2	12	72	18	53	69	4	3	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46674688--46674731	2	22.5	2	95	4	81	47	0	0	52	1.00
46675234--46675933	201	3.5	200	83	5	812	31	9	14	44	1.77
46676665--46677087	210	2.0	210	90	0	657	34	22	20	22	1.97
46677803--46677831	13	2.1	14	93	6	51	65	0	6	27	1.18
46679696--46679755	10	6.0	10	77	14	61	61	3	0	35	1.12
46679699--46679750	19	2.7	19	80	19	63	63	3	0	32	1.12
46679698--46679919	20	10.9	20	68	18	111	61	3	2	31	1.27
46679794--46679916	33	3.8	33	79	8	146	65	4	3	27	1.26
46679772--46679835	22	2.9	22	86	4	67	67	3	3	26	1.21
46679807--46679945	62	2.2	63	92	3	237	64	3	2	29	1.22
46679784--46679955	29	5.6	30	72	13	118	65	3	2	29	1.22
46681653--46681700	22	2.2	22	92	0	78	35	6	8	50	1.58
46681640--46681704	11	5.8	11	81	1	67	33	4	7	53	1.50
46681769--46681854	6	14.7	6	76	4	68	29	5	5	59	1.44
46681769--46681853	18	4.8	18	76	4	75	29	5	5	58	1.45
46681863--46681976	28	4.1	27	77	7	113	36	0	3	59	1.14
46682366--46682503	70	2.0	70	89	0	213	26	8	28	36	1.86
46683605--46683638	17	2.0	17	94	0	59	32	17	0	50	1.47
46684791--46684834	13	3.2	13	87	9	61	40	4	0	54	1.21
46688918--46688973	16	3.5	16	85	4	78	37	7	26	28	1.83
46689085--46689241	56	2.8	54	83	9	192	53	1	1	43	1.19
46689146--46689224	29	2.8	29	73	7	81	50	3	0	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46691983--46692037	22	2.4	23	90	6	94	12	21	25	40	1.89
46692036--46692084	25	2.0	25	91	0	80	16	34	10	38	1.82
46693407--46693582	85	2.1	86	96	1	327	48	12	15	23	1.78
46695243--46695289	24	2.0	24	100	0	94	25	12	6	55	1.61
46695243--46695305	24	2.6	24	89	0	81	26	14	7	50	1.70
46697179--46697221	21	2.0	23	90	9	72	27	11	4	55	1.55
46714174--46714210	9	4.3	9	80	13	51	59	0	0	40	0.97
46714911--46714941	2	15.5	2	100	0	62	51	0	0	48	1.00
46715149--46715177	13	2.1	14	93	6	51	3	0	6	89	0.57
46718555--46718599	19	2.4	19	81	7	56	37	0	4	57	1.19
46719402--46719431	16	1.9	16	93	6	53	13	13	3	70	1.30
46719397--46719457	22	2.8	22	83	11	65	14	11	3	70	1.28
46720723--46720774	12	4.2	12	76	13	52	51	0	1	46	1.12
46723182--46723219	20	1.9	20	88	0	58	15	26	26	31	1.96
46724502--46724534	17	1.9	17	88	11	50	24	3	6	66	1.28
46726445--46726498	20	2.7	21	88	5	76	31	25	14	27	1.95
46732528--46732574	2	23.5	2	100	0	94	51	0	48	0	1.00
46736345--46736406	16	3.6	16	74	16	52	67	1	0	30	1.00
46736319--46736412	45	2.1	44	82	9	111	65	2	1	30	1.11
46739561--46739586	6	4.3	6	100	0	52	15	0	0	84	0.62
46752819--46752850	15	2.1	15	94	0	55	84	0	15	0	0.63
46752819--46752851	8	4.2	8	88	7	50	84	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46760153--46760950	61	13.2	61	82	4	875	29	19	17	33	1.95
46760153--46760950	180	4.4	182	83	5	893	29	19	17	33	1.95
46760153--46760950	241	3.3	242	85	4	988	29	19	17	33	1.95
46778381--46778414	16	2.2	16	89	5	52	14	11	29	44	1.81
46794046--46794135	31	3.0	29	85	9	101	51	15	1	32	1.51
46796237--46796325	28	3.1	28	74	16	85	29	4	31	34	1.77
46796249--46796408	29	5.5	28	70	18	112	34	3	31	31	1.73
46796248--46796445	59	3.4	57	81	10	231	32	3	32	31	1.75
46796418--46796653	30	7.9	30	89	1	348	34	4	24	36	1.76
46797630--46797700	3	22.7	3	74	8	52	42	2	1	53	1.24
46798230--46798292	27	2.2	29	86	8	94	12	14	28	44	1.82
46798230--46798292	14	4.5	14	80	6	74	12	14	28	44	1.82
46798333--46798372	17	2.5	16	92	8	64	52	10	0	37	1.35
46798382--46798430	18	2.7	18	78	9	55	48	4	6	40	1.47
46801302--46801335	15	2.2	16	89	5	52	32	2	0	64	1.08
46806643--46806685	20	2.2	20	91	0	68	6	69	13	9	1.35
46808101--46808133	17	1.9	18	88	11	52	54	3	0	42	1.15
46808168--46808193	8	3.2	8	100	0	52	46	0	0	53	1.00
46808700--46808740	22	1.9	21	85	5	55	36	9	7	46	1.65
46808803--46808880	37	2.1	37	100	0	156	35	21	12	29	1.91
46809204--46809266	32	2.0	32	83	0	81	34	6	12	46	1.68
46809700--46809777	31	2.5	32	79	12	81	39	2	6	51	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46817088--46817121	15	2.2	16	89	5	52	32	2	0	64	1.08
46818264--46818884	307	2.0	308	96	1	1149	40	8	14	35	1.76
46819656--46819751	43	2.3	43	90	1	149	25	25	18	31	1.98
46821894--46822073	93	2.0	89	84	4	234	27	16	13	42	1.86
46822056--46822328	62	4.4	62	83	6	315	29	18	14	37	1.90
46822022--46822320	123	2.4	122	86	4	404	30	18	13	38	1.88
46830307--46830351	21	2.2	20	84	11	56	17	4	24	53	1.62
46831518--46831573	26	2.2	25	81	6	69	57	3	1	37	1.27
46832388--46832450	30	2.1	29	82	8	74	41	1	3	53	1.26
46833820--46835123	432	3.0	433	98	1	2548	40	6	12	39	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182