genome.fa.s9.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  140  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43552803--43552840	13	2.9	13	84	7	51	78	0	13	7	0.94
43553042--43553076	16	2.2	17	90	10	56	34	17	2	45	1.63
43558380--43558413	12	2.8	12	95	0	59	64	8	0	26	1.22
43558593--43558628	8	4.4	8	89	3	54	66	0	2	30	1.06
43558712--43558763	7	7.4	7	97	0	95	75	0	0	25	0.81
43560507--43560559	27	2.0	26	92	3	88	43	0	0	56	0.99
43562974--43563062	46	1.9	47	81	2	108	42	33	5	17	1.73
43563173--43563233	31	2.0	31	81	12	72	31	6	16	45	1.73
43565677--43565701	13	1.9	13	100	0	50	40	0	8	52	1.31
43567356--43567384	14	2.0	15	93	6	51	24	0	0	75	0.80
43567653--43567681	14	2.0	15	93	6	51	24	0	0	75	0.80
43567170--43567769	297	2.0	297	99	0	1175	38	9	9	42	1.71
43570546--43570603	23	2.6	22	72	2	62	55	0	3	41	1.17
43571671--43571769	31	3.4	28	82	6	81	40	1	3	55	1.22
43571703--43571793	6	15.0	6	76	11	78	48	2	1	48	1.21
43571697--43571770	17	4.2	17	74	20	71	41	1	1	55	1.17
43573557--43573608	25	2.0	27	88	7	81	13	11	5	69	1.35
43573926--43574274	30	11.9	30	84	5	455	36	24	3	35	1.74
43573926--43574274	59	5.9	60	86	5	464	36	24	3	35	1.74
43586250--43586361	31	3.5	31	75	11	125	37	16	19	25	1.93
43586213--43587246	145	7.3	144	90	5	1389	34	16	18	31	1.93
43586213--43587246	286	3.6	288	89	5	1373	34	16	18	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43586213--43587246	431	2.4	424	87	5	1441	34	16	18	31	1.93
43587524--43587578	28	2.0	28	85	0	74	36	0	5	58	1.21
43587552--43587642	6	15.0	6	75	11	78	50	2	0	47	1.13
43587543--43587616	17	4.6	16	80	11	89	41	1	0	56	1.07
43587571--43587642	31	2.3	30	83	9	83	52	2	0	44	1.15
43588497--43588540	10	4.3	10	80	5	52	63	0	2	34	1.07
43589391--43589684	162	1.8	163	88	2	457	26	15	10	46	1.79
43589800--43590124	30	10.9	30	88	2	467	37	24	3	35	1.72
43592976--43593087	39	2.9	39	87	0	161	38	18	17	25	1.93
43592978--43593167	79	2.4	79	80	11	203	36	18	20	25	1.95
43600025--43600148	62	2.0	62	85	3	169	32	8	5	54	1.53
43605039--43605072	11	2.9	12	86	8	52	11	17	20	50	1.77
43605173--43605226	24	2.3	23	87	3	72	33	12	12	40	1.82
43614413--43614553	39	3.6	39	79	0	165	35	18	20	25	1.95
43614400--43614567	39	4.3	39	76	8	137	33	19	20	26	1.96
43614495--43614591	39	2.5	39	78	9	99	36	19	18	25	1.95
43616532--43616569	8	4.8	8	81	12	51	31	0	0	68	0.90
43616549--43616605	10	5.6	10	80	15	64	35	1	1	61	1.17
43616546--43616605	31	2.0	31	90	9	97	33	1	1	63	1.14
43616704--43616742	17	2.3	17	86	0	51	35	5	0	58	1.20
43616921--43616964	17	2.5	17	85	3	52	31	4	2	61	1.28
43622554--43622605	21	2.5	21	96	0	95	30	15	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43624687--43624728	15	2.8	15	79	10	50	42	2	0	54	1.13
43626259--43626307	20	2.3	22	82	6	57	44	10	4	40	1.57
43629757--43629821	29	2.2	28	81	10	76	27	0	7	64	1.20
43638765--43638830	33	2.0	33	87	0	96	37	6	16	39	1.74
43643252--43643319	30	2.3	29	82	2	73	41	1	7	50	1.39
43645740--43645774	16	2.1	18	89	10	56	51	2	0	45	1.16
43645809--43645870	19	3.3	19	80	13	67	45	0	0	54	0.99
43645821--43645870	18	2.8	18	82	11	59	44	0	0	56	0.99
43645819--43645870	25	2.1	24	85	7	68	44	0	0	55	0.99
43645823--43645869	9	5.3	9	74	5	51	40	0	0	59	0.97
43646468--43646514	20	2.3	20	85	10	60	59	6	2	31	1.34
43647875--43648035	59	2.7	59	83	3	189	49	10	14	25	1.76
43647941--43648009	31	2.1	33	82	12	81	44	7	15	31	1.74
43653064--43653301	119	2.0	119	94	0	422	35	18	7	38	1.80
43654109--43654143	6	5.8	6	89	0	52	0	20	2	77	0.90
43654115--43654154	21	1.9	21	89	0	62	2	20	2	75	1.04
43662501--43662534	2	17.0	2	93	0	59	47	0	0	52	1.00
43663067--43663105	18	2.2	18	86	4	53	69	2	2	25	1.14
43663191--43663262	30	2.3	32	79	13	80	36	11	15	37	1.83
43663574--43663637	29	2.2	29	78	10	69	53	9	12	25	1.68
43670265--43670314	2	25.5	2	83	4	66	50	0	2	48	1.12
43670851--43670979	69	1.9	66	82	4	159	31	12	13	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43693124--43693166	14	3.2	14	80	9	54	18	0	6	74	1.04
43693112--43693188	6	12.8	6	75	13	52	14	0	6	79	0.92
43693118--43693190	26	2.7	26	79	8	76	15	0	8	76	1.00
43693151--43693202	21	2.4	22	83	3	70	9	0	13	76	1.01
43693165--43693217	24	2.3	24	84	9	67	13	0	16	69	1.18
43694447--43694494	21	2.4	19	82	10	51	31	29	0	39	1.57
43694462--43694500	20	1.9	21	84	5	53	35	25	0	38	1.56
43695820--43695857	17	2.2	17	90	0	58	18	0	15	65	1.27
43699628--43699663	15	2.4	15	95	0	63	47	22	0	30	1.52
43699783--43699821	20	2.0	20	89	0	60	51	20	0	28	1.48
43704138--43704213	25	3.0	25	98	0	143	34	13	15	36	1.87
43718437--43718470	2	17.0	2	100	0	68	50	0	0	50	1.00
43728708--43728928	42	5.3	42	83	7	261	38	9	26	25	1.86
43729545--43729655	50	2.2	50	96	0	204	24	13	26	36	1.92
43736599--43737052	201	2.3	195	80	7	508	25	25	19	29	1.99
43739370--43739411	18	2.3	18	100	0	84	30	7	16	45	1.74
43741802--43741864	33	1.9	33	96	0	117	19	23	6	50	1.70
43748133--43748166	17	1.9	17	88	5	50	73	2	0	23	0.97
43749230--43749290	14	4.1	14	77	10	68	26	16	1	55	1.50
43749233--43749291	15	4.0	14	78	8	64	27	15	1	55	1.49
43749230--43749290	29	2.1	30	87	3	88	26	16	1	55	1.50
43749230--43749292	16	4.1	16	80	12	78	25	15	1	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43749447--43749506	31	2.0	30	86	3	84	38	0	11	50	1.39
43751413--43751442	11	2.7	11	94	0	51	70	0	0	30	0.88
43754407--43754447	21	1.9	22	90	5	66	9	7	12	70	1.33
43754529--43754593	30	2.2	30	91	0	103	21	4	15	58	1.55
43755370--43755400	7	4.3	7	95	4	53	67	0	0	32	0.91
43759765--43759855	28	3.1	29	72	12	89	36	4	27	31	1.77
43759760--43759911	57	2.7	58	86	7	197	36	5	27	30	1.81
43759903--43760102	30	6.6	30	93	1	319	36	3	23	38	1.70
43760197--43760505	159	1.9	159	85	5	419	46	11	15	26	1.80
43761293--43761326	17	2.0	17	94	0	59	44	5	0	50	1.26
43761297--43761385	34	2.6	35	75	13	94	40	8	3	47	1.52
43761821--43761877	20	2.8	20	82	12	80	21	21	43	14	1.87
43762466--43763464	68	14.6	68	92	1	1552	27	20	18	34	1.95
43762465--43763468	409	2.4	410	93	2	1676	27	19	18	34	1.95
43775399--43775499	29	3.5	28	70	16	89	37	2	25	33	1.71
43775394--43775557	58	2.8	57	87	4	213	35	4	26	32	1.76
43775540--43776006	30	15.7	30	92	2	755	36	3	23	36	1.72
43776098--43776408	158	1.9	162	85	7	438	45	11	16	26	1.81
43776598--43776631	15	2.2	16	90	10	54	17	11	2	67	1.34
43777209--43777242	17	2.0	17	94	0	59	44	5	0	50	1.26
43777213--43777301	34	2.6	35	75	13	94	40	8	3	47	1.52
43777755--43777812	20	2.9	20	94	0	98	20	17	44	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43779417--43779463	22	2.1	22	88	7	69	19	6	6	68	1.34
43785912--43785974	31	2.0	31	87	0	90	38	7	7	46	1.63
43786098--43786175	29	2.6	30	79	8	86	48	11	5	34	1.61
43786978--43787024	21	2.2	22	81	11	53	42	0	10	46	1.38
43790826--43790876	17	3.1	17	72	11	52	64	7	3	23	1.37
43790801--43790876	32	2.3	33	84	6	102	61	7	3	26	1.41
43792809--43792859	18	2.8	18	84	0	66	25	29	19	25	1.99
43793451--43794045	297	2.0	299	94	1	1043	30	18	22	28	1.97
43799116--43799140	7	3.6	7	100	0	50	12	28	0	60	1.32
43804542--43804592	17	2.9	17	80	8	59	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182