genome.fa.s9.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  122  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39268607--39268719	59	1.9	60	89	5	176	36	15	5	42	1.70
39268627--39268740	30	3.9	30	71	7	90	35	18	7	39	1.78
39268607--39268740	59	2.3	60	84	5	166	36	17	5	40	1.74
39274107--39274188	20	4.2	19	75	14	78	78	1	19	1	0.89
39274117--39274187	5	14.2	5	75	11	65	77	1	19	1	0.92
39274108--39274174	7	9.3	7	74	18	57	77	1	19	1	0.92
39274108--39274177	14	4.8	15	74	24	69	77	1	20	1	0.93
39275061--39275255	75	2.6	75	84	0	246	42	16	19	22	1.89
39275210--39275353	48	3.0	48	79	0	153	42	16	18	22	1.89
39275403--39275495	48	1.9	48	88	0	141	39	19	19	21	1.92
39275290--39275593	144	2.1	144	80	3	342	40	17	20	22	1.92
39275450--39275720	96	2.9	96	83	2	334	35	17	23	23	1.95
39275827--39275959	45	2.9	46	85	5	164	30	24	17	28	1.97
39278414--39278680	45	6.0	44	80	11	253	29	23	19	26	1.98
39278414--39278669	87	2.9	87	81	11	272	28	24	19	27	1.98
39278417--39278680	132	2.0	134	80	7	304	29	23	19	26	1.98
39280342--39280449	29	3.7	27	78	18	103	34	23	3	38	1.72
39281774--39282255	183	2.7	180	81	7	557	39	10	16	33	1.83
39282990--39283930	179	5.3	176	83	7	1114	37	9	17	35	1.82
39282990--39283930	175	5.3	178	84	6	1145	37	9	17	35	1.82
39282990--39283930	357	2.6	358	83	6	1221	37	9	17	35	1.82
39291544--39291610	9	7.2	9	75	18	66	38	2	1	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39291523--39291610	10	9.2	10	70	16	62	36	3	1	59	1.22
39291960--39292011	26	2.0	26	92	0	86	40	1	3	53	1.30
39293610--39293641	2	16.0	2	100	0	64	50	0	0	50	1.00
39293929--39293959	10	3.0	10	90	9	53	58	0	0	41	0.98
39293929--39293957	11	2.7	11	94	5	51	58	0	0	41	0.98
39294087--39294160	10	7.4	10	71	7	53	27	2	1	68	1.10
39294087--39294160	21	3.7	20	75	8	71	27	2	1	68	1.10
39294526--39294580	26	2.1	26	93	0	92	32	1	7	58	1.36
39298845--39298880	18	1.9	19	88	5	56	8	5	36	50	1.56
39300744--39300788	17	2.8	16	81	18	58	0	22	0	77	0.76
39300744--39300789	10	4.3	11	86	8	60	0	21	0	78	0.76
39307935--39307966	13	2.5	13	100	0	64	40	21	6	31	1.78
39311409--39311466	27	2.2	27	87	9	84	20	20	18	39	1.92
39312776--39312818	19	2.3	19	91	0	68	27	20	6	44	1.77
39315888--39315950	20	3.3	18	86	13	74	55	3	1	39	1.25
39320145--39320180	14	2.3	17	81	18	51	55	0	0	44	0.99
39320320--39320409	10	9.2	10	74	13	89	34	1	1	63	1.09
39320320--39320409	39	2.3	39	80	3	101	34	1	1	63	1.09
39326619--39326681	31	2.0	31	100	0	126	31	22	30	15	1.95
39327317--39327474	41	3.9	41	81	1	156	39	17	22	19	1.92
39328886--39329096	41	5.1	40	81	5	215	39	15	26	18	1.90
39328886--39329067	81	2.2	82	83	2	222	41	15	26	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39328956--39329102	40	3.5	45	84	5	125	37	15	27	19	1.92
39329916--39329961	14	3.5	14	77	17	62	4	19	17	58	1.55
39329916--39329963	25	1.9	25	100	0	96	4	20	16	58	1.55
39329924--39329967	11	3.7	11	77	16	52	2	20	18	59	1.49
39333266--39333309	20	2.2	20	100	0	88	34	13	0	52	1.41
39334894--39334924	12	2.6	12	89	0	53	35	29	6	29	1.82
39335303--39335407	43	2.4	43	85	0	138	23	20	26	29	1.99
39336961--39337026	30	2.2	30	89	5	89	39	3	19	37	1.67
39336961--39337026	29	2.2	30	89	5	98	39	3	19	37	1.67
39336984--39337078	29	3.2	28	77	12	77	37	2	22	37	1.66
39337055--39337162	29	3.7	29	77	12	105	37	1	26	34	1.68
39337062--39337162	28	3.5	28	73	15	89	36	1	25	35	1.68
39337953--39337995	17	2.6	17	96	3	79	58	9	0	32	1.30
39338464--39338693	50	4.7	49	70	10	164	17	32	15	34	1.91
39338607--39339338	149	4.9	149	74	7	448	16	31	17	34	1.92
39338465--39339516	99	10.6	99	76	6	623	16	31	17	34	1.92
39338584--39339468	347	2.5	346	85	1	1130	15	31	17	34	1.92
39338812--39339338	248	2.1	247	82	2	619	15	31	18	34	1.92
39338710--39339524	50	16.4	50	74	5	267	15	32	17	34	1.92
39342377--39342500	57	2.1	59	89	2	189	43	10	19	26	1.83
39348331--39348384	15	3.3	15	74	18	54	42	0	3	53	1.18
39348417--39348453	16	2.3	16	86	13	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39348558--39348592	13	2.7	13	86	0	52	60	2	2	34	1.26
39349081--39349109	3	9.7	3	100	0	58	34	0	0	65	0.93
39351454--39351535	43	1.9	43	87	0	119	29	24	18	28	1.98
39351455--39351545	43	2.1	43	83	0	110	30	26	16	26	1.97
39355759--39356180	41	10.3	39	80	6	371	17	28	21	33	1.96
39355759--39356180	82	5.2	82	83	2	499	17	28	21	33	1.96
39355759--39356164	123	3.3	121	82	5	485	17	28	20	33	1.96
39356917--39356969	28	1.9	27	84	3	70	24	11	3	60	1.47
39358679--39358721	11	4.2	10	83	13	52	18	2	4	74	1.10
39358661--39358715	17	3.1	19	82	12	64	25	0	5	69	1.10
39358856--39358902	23	2.1	22	84	4	58	29	10	2	57	1.44
39364488--39364881	48	8.2	48	83	1	457	37	24	14	23	1.92
39366994--39367026	10	3.3	10	88	12	50	18	0	6	75	1.00
39366998--39367026	10	2.7	11	94	5	51	17	0	6	75	1.01
39366994--39367036	21	2.1	20	83	12	52	18	2	4	74	1.10
39369940--39370263	177	1.8	177	95	0	594	23	38	15	21	1.92
39371272--39371318	24	2.0	23	83	8	58	55	12	2	29	1.49
39372926--39372970	22	2.0	23	86	4	65	37	4	0	57	1.19
39373083--39373141	18	3.4	17	67	19	50	64	1	5	28	1.24
39373070--39373152	34	2.4	34	91	0	130	67	3	6	22	1.29
39373100--39373149	26	1.9	26	84	8	66	68	2	6	24	1.23
39392424--39392592	86	2.0	86	86	2	241	38	12	23	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39392424--39392592	43	3.9	43	78	6	173	38	12	23	26	1.90
39396899--39396939	16	2.5	17	80	11	59	68	0	0	31	0.90
39398526--39398581	20	2.8	20	76	15	55	37	0	3	58	1.15
39398958--39399235	51	5.4	51	62	19	119	26	28	15	30	1.96
39398936--39399360	104	4.1	104	91	0	661	26	28	15	29	1.96
39399937--39399970	15	2.2	16	89	5	52	11	17	35	35	1.87
39404858--39404918	33	2.0	31	84	12	81	55	3	32	8	1.45
39404859--39404932	33	2.3	31	81	13	78	55	2	35	6	1.41
39404991--39405031	16	2.5	17	80	15	50	31	0	7	60	1.24
39405074--39405116	20	2.1	21	82	4	52	32	0	25	41	1.56
39405272--39405379	25	4.2	24	83	9	110	12	28	18	39	1.88
39407724--39407768	6	7.8	6	80	9	58	42	2	0	55	1.12
39407724--39407767	17	2.6	17	96	0	79	40	2	0	56	1.11
39408319--39408375	28	2.0	28	100	0	114	40	28	14	17	1.88
39408557--39408590	9	3.9	9	88	7	52	58	2	0	38	1.13
39409249--39409310	33	1.9	32	86	3	88	14	11	8	66	1.45
39409605--39409759	29	5.4	28	66	24	74	30	30	3	35	1.74
39409596--39410138	58	9.3	58	84	5	711	31	28	4	35	1.76
39409596--39410138	175	3.1	172	84	5	732	31	28	4	35	1.76
39409983--39410161	28	6.1	29	65	23	81	35	27	3	34	1.74
39412919--39412961	20	2.1	21	82	4	52	32	0	25	41	1.56
39413116--39413219	25	4.2	24	77	9	86	16	28	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39413126--39413195	23	3.0	23	83	8	79	15	27	21	35	1.94
39413833--39413879	20	2.4	20	85	3	60	40	6	14	38	1.72
39414265--39414582	163	2.0	163	91	0	519	33	26	14	25	1.94
39417837--39417869	6	5.5	6	100	0	66	30	0	69	0	0.88
39417893--39417946	25	2.2	24	83	6	72	44	0	1	53	1.11
39417899--39417940	19	2.1	21	86	8	61	50	0	0	50	1.00
39417906--39417956	19	2.7	18	82	8	57	50	0	3	45	1.20
39417953--39418027	29	2.6	28	78	16	82	37	0	1	61	1.05
39418702--39418738	2	18.5	2	88	0	56	48	0	5	45	1.25
39424014--39424057	18	2.4	18	100	0	88	40	22	11	25	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182