genome.fa.s9.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  117  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37915709--37915779	37	1.9	37	94	0	124	23	18	29	28	1.98
37916824--37916870	17	2.8	17	90	0	67	48	12	21	17	1.79
37919906--37920014	37	2.9	37	83	2	112	25	19	27	27	1.99
37932324--37932410	23	3.8	23	70	3	77	36	12	24	26	1.91
37933512--37933576	18	3.7	18	83	4	96	29	26	23	21	1.99
37934759--37934804	14	3.3	14	90	0	65	32	13	23	30	1.93
37939063--37939105	19	2.3	19	84	11	54	39	0	0	60	0.97
37939063--37939110	13	3.8	13	76	20	57	39	0	0	60	0.97
37941313--37941403	46	2.0	47	89	6	143	48	5	21	24	1.71
37943096--37943146	9	5.6	9	75	13	50	68	0	0	31	0.90
37943105--37943176	29	2.4	30	81	9	76	68	0	4	27	1.08
37943400--37943478	29	2.8	29	75	14	74	27	7	1	63	1.29
37943428--37943497	9	7.6	9	70	12	52	25	4	1	68	1.16
37943428--37943498	28	2.5	28	84	11	83	25	4	1	69	1.15
37943429--37943499	19	3.7	18	71	16	54	25	4	1	69	1.15
37943452--37943530	29	2.7	29	80	9	81	32	1	2	63	1.16
37947821--37947864	23	2.0	22	86	4	61	38	0	15	45	1.47
37951888--37951919	14	2.1	16	88	11	50	31	6	6	56	1.49
37953880--37953936	18	3.2	18	75	9	62	52	14	10	22	1.71
37956647--37956684	19	2.1	18	90	5	58	26	0	13	60	1.33
37962129--37962326	98	2.0	98	98	0	378	25	25	10	38	1.88
37963621--37963780	80	2.0	80	98	0	311	26	26	8	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37963990--37964026	9	4.2	9	89	3	58	59	2	0	37	1.12
37964709--37964739	16	1.9	16	93	0	53	58	0	16	25	1.38
37968738--37968779	17	2.5	17	96	0	75	26	14	35	23	1.93
37975386--37975425	17	2.4	17	86	0	53	50	10	20	20	1.76
37977702--37977732	16	1.9	16	93	0	53	61	0	16	22	1.34
37980105--37980169	33	1.9	34	87	9	98	20	23	7	49	1.74
37986318--37986371	26	2.1	26	89	0	81	48	5	18	27	1.70
37989722--37989786	31	2.1	31	97	0	121	33	24	0	41	1.55
37991551--37991633	18	4.7	18	81	3	96	31	27	20	20	1.97
37992763--37992869	28	3.8	28	77	9	101	28	14	26	29	1.95
37992791--37992869	14	5.6	14	73	13	63	30	13	25	30	1.94
37999719--37999755	5	7.6	5	88	11	51	37	0	0	62	0.96
37999716--37999760	15	3.2	14	82	17	58	37	0	0	62	0.96
38002908--38003002	37	2.6	36	76	11	97	66	1	1	31	1.06
38002943--38003001	28	2.1	29	87	6	86	66	1	1	30	1.12
38002988--38003035	20	2.5	19	77	12	53	68	4	4	22	1.24
38003208--38003279	19	3.7	20	75	7	67	26	6	4	62	1.39
38003208--38003297	38	2.4	38	82	12	105	25	6	3	64	1.34
38003207--38003307	28	3.6	28	69	15	82	26	5	2	64	1.31
38003290--38003368	30	2.7	30	79	13	83	31	2	2	63	1.21
38003824--38004453	210	3.0	210	98	0	1208	37	8	13	39	1.76
38004526--38004581	17	3.3	17	71	0	58	41	1	37	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38004760--38004787	2	14.0	2	100	0	56	50	0	0	50	1.00
38011538--38011627	46	2.0	46	91	4	148	50	4	21	24	1.67
38012085--38012339	88	2.9	89	78	5	214	39	14	7	38	1.74
38012442--38012523	19	4.2	19	70	14	60	68	0	3	28	1.06
38012442--38012523	28	2.8	28	75	14	76	68	0	3	28	1.06
38012766--38012833	21	3.3	21	77	6	77	29	2	1	66	1.15
38013487--38013620	70	2.0	67	83	4	169	41	13	11	32	1.81
38015781--38015821	21	2.0	20	86	9	57	48	4	19	26	1.69
38015933--38015978	2	23.0	2	100	0	92	50	0	0	50	1.00
38017137--38017205	29	2.4	29	80	7	77	43	1	4	50	1.30
38020231--38020257	9	3.0	9	100	0	54	55	0	0	44	0.99
38025062--38025105	18	2.4	18	84	3	61	52	13	11	22	1.72
38027308--38027336	15	1.9	15	100	0	58	41	0	31	27	1.56
38038516--38038546	16	1.9	16	93	0	53	61	0	16	22	1.34
38039469--38039541	37	2.0	37	86	0	101	23	15	30	31	1.95
38040831--38040875	22	2.0	22	91	0	72	24	20	11	44	1.83
38047748--38047787	3	14.0	3	89	10	66	65	0	0	35	0.93
38048539--38048563	13	1.9	13	100	0	50	48	0	16	36	1.46
38049391--38049443	27	2.0	27	96	0	97	30	11	28	30	1.91
38049596--38049634	16	2.4	16	100	0	78	23	17	23	35	1.95
38049609--38049786	14	12.5	14	75	2	140	26	14	26	32	1.95
38062797--38062826	12	2.5	12	100	0	60	53	6	6	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38064434--38064466	12	2.8	12	86	4	50	0	24	0	75	0.80
38064427--38064492	13	5.2	12	70	12	51	3	16	1	78	0.95
38067920--38067967	23	2.1	23	100	0	96	25	25	8	41	1.83
38072761--38072786	3	8.7	3	100	0	52	0	0	30	69	0.89
38077960--38078011	26	2.0	26	100	0	104	30	19	19	30	1.96
38079206--38079277	22	3.3	21	78	7	81	38	8	22	30	1.83
38079186--38079301	44	2.6	43	86	5	142	40	9	21	28	1.84
38079215--38079301	22	3.9	22	74	7	77	41	10	19	28	1.84
38079488--38079574	14	6.1	14	70	10	50	26	13	29	29	1.94
38079490--38079580	29	3.1	29	80	0	110	23	13	34	29	1.92
38079455--38079554	43	2.3	43	80	11	107	24	13	29	34	1.92
38080984--38081017	17	2.1	17	94	5	61	61	2	0	35	1.11
38084070--38084104	18	1.9	18	88	0	52	71	0	2	25	1.00
38093825--38093900	28	2.9	25	83	15	75	32	1	9	56	1.39
38093831--38093880	16	3.4	16	68	21	54	34	0	10	56	1.33
38093825--38093882	28	2.1	28	100	0	116	32	0	10	56	1.33
38099674--38099731	29	2.0	29	100	0	116	37	10	24	27	1.88
38100070--38100438	147	2.5	147	84	2	465	39	15	24	21	1.92
38100070--38100641	147	3.9	144	81	5	445	40	17	22	19	1.91
38100070--38100585	49	10.5	49	74	3	313	39	16	23	20	1.91
38100028--38100587	98	5.7	98	77	0	402	39	16	23	20	1.92
38101950--38102036	27	3.0	28	81	8	86	21	5	8	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38102078--38102123	23	2.0	23	84	16	60	26	4	0	69	1.07
38102087--38102122	15	2.4	14	90	9	54	27	2	0	69	1.02
38104840--38104874	13	2.7	13	100	0	70	34	28	22	14	1.93
38106162--38106227	13	5.0	13	75	3	69	39	18	6	36	1.75
38106528--38106580	21	2.5	20	82	14	54	35	0	1	62	1.06
38110524--38110594	29	2.4	31	85	4	101	46	1	2	49	1.25
38110965--38111128	86	1.9	86	89	1	258	38	21	7	32	1.82
38111590--38111756	56	2.9	57	81	9	198	29	20	16	33	1.94
38112236--38112280	21	2.1	21	87	0	63	24	13	28	33	1.93
38115576--38115646	29	2.4	31	85	4	101	46	1	2	49	1.25
38116014--38116175	86	1.9	85	92	1	270	39	19	6	33	1.78
38118488--38118515	13	2.2	13	100	0	56	35	0	7	57	1.26
38118536--38118712	23	7.4	22	70	18	79	51	4	9	34	1.55
38118661--38118709	11	4.4	11	82	5	62	59	0	10	30	1.31
38118659--38118709	16	3.1	16	78	10	66	56	0	11	31	1.35
38118777--38118829	27	2.1	26	89	10	83	52	1	7	37	1.41
38119102--38119155	15	3.7	15	80	5	65	66	3	0	29	1.09
38122545--38122608	33	2.0	32	85	14	87	29	6	4	59	1.42
38122577--38122629	21	2.5	21	87	0	79	32	1	5	60	1.31
38123620--38123740	30	4.1	30	85	5	156	28	5	4	61	1.37
38124666--38124701	18	2.0	18	94	0	63	25	5	5	63	1.38
38124702--38124845	54	2.6	54	80	5	157	32	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38132518--38132576	28	2.1	28	81	12	68	28	1	5	64	1.24
38135632--38135673	11	3.9	11	81	3	50	40	0	4	54	1.21
38135653--38135695	17	2.6	17	82	10	54	44	0	2	53	1.13
38135632--38135673	22	2.0	22	85	4	59	40	0	4	54	1.21
38135655--38135706	27	1.9	27	88	0	77	44	1	1	51	1.23
38135651--38135704	16	3.3	16	79	5	54	44	1	1	51	1.22
38137585--38137708	30	4.2	30	79	15	123	38	26	0	33	1.62
38137616--38137976	59	6.1	59	84	6	428	34	29	3	33	1.73
38137608--38137886	30	9.4	30	66	24	121	34	30	2	32	1.70
38153673--38153746	20	3.7	20	88	0	103	29	6	35	28	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182