genome.fa.s9.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  143  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44246169--44246307	60	2.3	61	81	7	169	35	24	0	38	1.61
44248065--44248093	3	9.7	3	100	0	58	68	0	0	31	0.89
44250846--44250872	13	2.1	13	100	0	54	22	22	29	25	1.99
44253124--44253179	19	3.1	18	82	10	60	51	7	0	41	1.29
44253815--44253879	20	3.3	20	73	4	60	47	18	6	27	1.72
44253816--44253890	39	1.9	39	83	0	96	48	14	6	30	1.70
44260411--44260464	23	2.3	24	80	3	65	68	3	7	20	1.30
44260510--44260582	21	3.5	20	70	18	58	69	4	4	21	1.22
44260461--44260607	72	2.1	68	80	8	161	66	4	5	23	1.32
44260560--44260607	15	3.2	15	82	5	53	68	4	2	25	1.18
44260782--44260823	15	2.8	16	78	7	52	73	7	2	16	1.15
44260782--44260831	15	3.3	15	73	18	50	74	6	2	18	1.12
44260835--44260868	13	2.5	14	85	4	52	76	5	0	17	0.98
44260779--44260959	97	1.8	97	83	8	238	65	6	6	21	1.38
44260885--44260923	16	2.5	15	87	4	51	69	7	2	20	1.26
44263871--44264172	117	2.6	118	83	6	357	35	4	26	33	1.76
44263872--44264242	59	6.3	60	81	10	324	35	4	25	35	1.75
44263871--44264212	117	2.9	113	81	10	334	34	3	25	35	1.74
44264118--44264275	30	5.3	30	81	5	144	34	3	23	39	1.71
44264805--44264837	11	2.8	12	86	13	50	54	21	6	18	1.64
44265992--44266048	25	2.3	25	84	0	69	24	10	45	19	1.81
44266720--44268966	206	10.9	206	89	1	3144	23	22	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44266725--44268966	411	5.5	410	87	2	3105	23	22	18	34	1.96
44266725--44268966	617	3.6	615	88	2	3157	23	22	18	34	1.96
44268791--44269138	175	2.0	174	90	1	545	23	24	18	33	1.97
44268966--44269958	201	4.9	204	88	3	1362	24	23	17	34	1.96
44268965--44269958	407	2.4	405	86	5	1351	24	23	17	34	1.96
44269779--44270132	175	2.0	175	85	4	471	24	24	17	33	1.96
44267968--44270709	992	2.8	988	91	2	4266	23	23	17	34	1.96
44269960--44270709	201	3.7	201	89	2	1038	24	23	17	35	1.95
44270606--44270784	85	2.1	85	92	0	295	26	25	13	35	1.93
44270400--44270998	289	2.1	289	86	4	823	24	23	16	36	1.94
44271192--44271324	39	3.4	39	72	6	117	27	16	30	25	1.97
44271119--44271363	78	3.1	76	79	5	267	26	17	29	26	1.98
44271661--44272050	50	7.9	50	67	13	178	15	24	19	40	1.91
44271615--44271984	100	3.7	100	83	1	456	16	25	18	39	1.91
44271861--44272137	143	1.9	143	83	5	351	15	24	18	41	1.89
44273346--44273399	18	2.8	18	75	10	54	1	11	3	83	0.85
44278904--44279007	28	3.6	28	78	11	104	35	3	25	35	1.74
44278930--44279135	30	7.0	30	73	14	123	34	3	24	36	1.73
44278930--44279066	29	4.7	30	75	17	112	34	1	25	38	1.65
44278930--44279134	29	7.0	30	75	11	104	34	3	24	37	1.73
44278930--44279066	58	2.4	58	81	14	142	34	1	25	38	1.65
44281152--44281177	11	2.4	11	100	0	52	46	7	0	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44281157--44281204	6	8.2	6	79	11	55	47	6	0	45	1.27
44281157--44281201	17	2.6	17	93	6	74	46	6	0	46	1.29
44281173--44281236	17	3.6	17	78	12	65	51	9	3	35	1.50
44287279--44287372	30	3.2	30	87	1	127	47	27	15	8	1.75
44301975--44302020	19	2.4	19	85	0	56	34	28	6	30	1.82
44308494--44308574	31	2.7	30	80	12	94	50	3	1	44	1.27
44313005--44313033	3	9.7	3	100	0	58	31	34	0	34	1.58
44313637--44313671	3	11.7	3	93	0	61	2	65	0	31	1.07
44319101--44319142	19	2.3	19	87	4	59	42	7	16	33	1.75
44319393--44319456	21	3.2	21	68	28	66	37	7	6	48	1.57
44319394--44319459	23	3.2	23	64	28	65	37	7	6	48	1.56
44319391--44319468	39	2.0	39	100	0	156	38	7	7	46	1.61
44319728--44319879	70	2.2	69	83	1	187	28	21	21	27	1.99
44327390--44327478	30	2.8	32	80	15	85	56	3	1	39	1.23
44328409--44328462	26	2.1	26	96	0	99	44	0	9	46	1.35
44331214--44331244	2	15.5	2	93	0	53	0	54	0	45	0.99
44332850--44332902	27	2.0	27	81	7	63	1	28	13	56	1.47
44345819--44345854	17	2.1	17	100	0	72	30	27	30	11	1.91
44352065--44352201	72	1.9	72	90	0	220	36	13	12	37	1.82
44359330--44359378	4	11.5	4	79	12	53	48	2	4	44	1.33
44359330--44359378	13	3.8	12	80	15	53	48	2	4	44	1.33
44359336--44359378	9	4.9	9	94	2	61	51	0	4	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44360104--44360151	24	2.0	24	87	0	69	20	31	2	45	1.63
44360124--44360165	17	2.4	17	88	4	57	23	28	0	47	1.52
44362582--44362632	24	2.1	24	96	0	93	23	9	7	58	1.56
44362582--44362644	24	2.6	24	87	0	81	25	12	9	52	1.69
44365892--44365934	3	14.0	3	80	4	50	60	0	0	39	0.97
44366142--44366255	30	3.8	29	85	6	140	39	19	0	40	1.58
44366145--44366434	59	4.9	60	79	7	213	35	23	4	36	1.74
44366233--44366522	29	9.7	31	69	17	125	33	25	6	34	1.81
44366183--44366541	59	6.1	58	77	7	285	34	25	5	33	1.80
44368868--44368901	9	3.9	9	92	3	52	52	0	2	44	1.16
44375331--44375460	62	2.1	63	84	4	165	28	21	18	31	1.97
44375409--44375595	52	3.6	52	89	0	284	35	24	14	26	1.93
44384422--44384553	69	1.9	69	83	6	171	50	8	6	35	1.57
44386817--44387007	59	3.2	57	78	13	190	27	17	19	35	1.95
44387403--44387429	14	1.9	14	100	0	54	33	14	14	37	1.88
44387666--44387785	58	2.1	58	90	3	188	48	20	0	31	1.50
44392176--44392697	81	6.5	72	84	10	338	42	5	4	47	1.47
44392255--44392697	164	2.7	166	93	2	768	42	5	4	47	1.45
44392255--44392697	81	5.4	83	92	3	725	42	5	4	47	1.45
44394196--44394232	19	2.0	19	89	5	58	67	0	2	29	1.04
44394434--44394459	8	3.2	8	100	0	52	23	0	11	65	1.25
44394875--44394968	35	2.7	35	88	1	134	23	25	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44394873--44394968	18	5.4	18	75	3	88	23	25	21	29	1.99
44401435--44401481	23	2.0	23	100	0	94	8	12	31	46	1.72
44406232--44406321	44	2.0	44	97	0	171	41	14	13	31	1.84
44411469--44411493	13	1.9	13	100	0	50	32	24	12	32	1.91
44412168--44412219	20	2.6	21	81	9	72	50	13	7	28	1.69
44416786--44416832	24	2.0	24	86	0	67	17	0	4	78	0.90
44418917--44418953	18	2.1	18	90	10	58	29	5	5	59	1.42
44419355--44419430	25	3.1	25	74	14	77	47	1	1	50	1.18
44419344--44419415	11	6.5	11	77	13	51	43	0	1	55	1.08
44429565--44429777	29	7.2	30	76	9	127	34	9	24	31	1.87
44429561--44429688	59	2.2	60	78	5	136	30	10	26	32	1.91
44429594--44429780	89	2.1	88	81	6	218	37	8	22	31	1.84
44429605--44429779	29	6.0	30	76	7	146	38	8	22	30	1.83
44429613--44429804	88	2.2	89	81	6	228	38	6	21	33	1.80
44429761--44429862	30	3.4	29	84	6	125	38	1	20	39	1.64
44431058--44431091	16	2.1	16	94	0	59	41	14	11	32	1.82
44432208--44432455	39	6.4	39	69	10	148	23	17	33	25	1.96
44432244--44432496	77	3.2	77	86	1	335	24	18	32	24	1.97
44432208--44432496	39	7.4	39	69	13	141	23	17	33	25	1.97
44432769--44433420	49	13.3	49	68	13	378	18	26	18	36	1.94
44432782--44433415	293	2.2	294	96	0	1153	18	26	18	36	1.94
44432739--44433415	98	6.9	98	81	5	769	18	26	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44433591--44433651	17	3.8	17	74	10	65	42	0	6	50	1.28
44433622--44433671	20	2.5	20	84	15	68	40	0	8	52	1.31
44435521--44435611	29	3.1	29	83	9	89	39	18	5	36	1.74
44435577--44435893	29	10.8	30	67	16	173	34	28	2	34	1.72
44435577--44435942	59	6.3	59	85	6	435	33	28	3	34	1.73
44435576--44435982	59	6.9	58	83	7	249	32	29	4	33	1.77
44443031--44443100	28	2.4	29	83	9	90	27	10	25	37	1.88
44443047--44443149	29	3.6	29	79	11	115	30	10	28	31	1.90
44443109--44443297	86	2.2	88	79	7	208	35	5	22	35	1.79
44443167--44443367	29	6.9	28	72	13	145	37	3	21	36	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182