genome.fa.s9.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  154  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47536796--47537164	29	12.7	29	67	25	138	32	29	2	35	1.73
47536798--47537164	60	6.3	57	81	6	350	32	29	2	34	1.73
47539582--47539777	102	1.9	102	98	0	383	26	27	16	30	1.97
47540815--47540862	20	2.3	21	82	7	62	52	2	2	43	1.24
47543074--47543142	34	2.0	34	97	0	129	33	13	14	39	1.85
47545328--47545402	17	4.4	17	83	6	89	45	1	2	50	1.24
47547221--47547463	29	8.4	29	69	21	118	32	25	2	38	1.69
47547248--47547497	57	4.3	58	90	2	360	32	26	2	38	1.71
47555219--47555267	25	2.0	25	87	0	71	51	12	2	34	1.51
47559557--47560231	38	17.6	38	68	17	353	34	14	17	32	1.91
47559537--47560319	75	10.1	76	88	7	1121	34	14	17	33	1.90
47560549--47560620	29	2.5	29	76	13	76	44	1	1	52	1.18
47560549--47560622	6	12.7	6	71	5	53	43	1	1	54	1.17
47560550--47560595	23	2.0	22	87	4	65	41	0	2	56	1.11
47560575--47560616	17	2.4	17	88	4	57	42	2	0	54	1.13
47560574--47560657	41	2.0	42	84	6	109	40	2	2	54	1.26
47562497--47562688	30	6.4	30	71	22	102	34	28	1	35	1.67
47562522--47562896	59	6.3	60	85	4	456	32	27	3	37	1.73
47562584--47562808	30	7.6	29	68	20	98	33	26	2	36	1.71
47565522--47565617	44	2.2	44	98	1	183	64	8	9	17	1.47
47573671--47573783	30	3.6	30	73	9	118	28	10	8	52	1.66
47573649--47573777	64	2.0	64	100	0	258	27	9	9	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47577160--47577239	17	4.7	17	73	0	61	38	1	7	52	1.38
47577210--47577258	17	2.8	17	78	6	53	55	0	2	42	1.11
47577976--47578029	27	2.0	26	82	13	65	57	3	3	35	1.34
47578066--47578117	23	2.3	23	86	0	68	19	28	26	25	1.98
47579111--47579312	29	6.9	29	71	17	127	34	23	4	36	1.77
47579111--47579322	58	3.6	57	78	16	188	34	23	4	37	1.76
47579257--47579384	63	2.0	65	83	6	163	32	20	5	41	1.75
47582481--47582840	58	6.1	60	74	11	284	28	20	15	35	1.93
47582499--47582849	117	3.0	115	82	7	399	29	19	15	35	1.93
47583648--47583735	30	2.9	30	89	3	124	62	3	5	28	1.34
47584882--47584984	53	2.0	52	81	9	120	48	2	5	42	1.42
47584955--47584992	20	1.9	20	94	0	67	68	0	7	23	1.16
47586023--47586092	22	3.2	22	77	6	79	18	7	37	37	1.78
47586180--47586811	84	7.5	84	91	3	963	46	4	5	42	1.49
47586476--47586693	45	5.1	44	66	22	160	45	4	7	42	1.52
47586206--47586809	170	3.6	170	89	6	793	46	5	5	42	1.50
47590257--47590595	60	5.8	59	76	10	268	36	13	17	32	1.89
47590287--47590605	177	1.8	174	82	6	410	36	14	18	30	1.91
47590257--47590553	117	2.5	118	83	8	381	37	13	16	32	1.88
47590257--47590553	60	5.0	60	77	11	292	37	13	16	32	1.88
47590257--47590599	117	2.9	117	80	7	306	36	13	17	32	1.89
47597906--47598099	97	2.0	97	80	9	218	38	16	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47598370--47598641	30	9.3	29	68	20	120	33	7	22	35	1.83
47598386--47598757	59	6.3	58	76	12	244	35	5	21	37	1.77
47598361--47598641	58	4.8	59	81	6	295	34	7	22	35	1.82
47598386--47598714	58	5.6	57	78	9	274	34	6	22	36	1.79
47598386--47598700	117	2.7	116	79	10	345	34	6	22	36	1.80
47598592--47598680	29	3.1	27	72	15	72	33	2	23	40	1.67
47598595--47598797	30	6.8	29	74	12	144	36	0	21	40	1.60
47600662--47601049	205	1.9	204	87	2	564	22	22	19	35	1.96
47601134--47601276	39	3.7	39	76	8	139	27	20	28	23	1.99
47601123--47601317	78	2.5	77	85	2	255	26	19	29	24	1.98
47601172--47601355	39	4.7	39	77	6	147	26	20	28	25	1.99
47601661--47601840	49	3.7	49	75	3	182	20	28	15	36	1.93
47601629--47601865	98	2.4	97	85	2	321	18	27	17	36	1.93
47601890--47601980	43	2.1	42	81	4	101	30	27	15	26	1.96
47606634--47606693	28	2.1	27	80	14	68	30	8	28	33	1.86
47606647--47606750	28	3.7	28	69	19	72	37	4	25	32	1.77
47606791--47606896	30	3.7	29	82	9	128	38	0	24	35	1.62
47606765--47606896	58	2.3	58	83	7	162	38	3	23	34	1.70
47606871--47606916	20	2.3	20	88	0	65	43	0	19	36	1.51
47606899--47606956	30	1.9	31	85	3	82	34	5	18	41	1.73
47608068--47608125	21	2.8	20	84	5	80	48	1	0	50	1.11
47608816--47608909	18	5.3	17	79	7	107	55	4	0	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47608816--47608889	6	12.7	6	76	11	64	56	2	0	40	1.13
47608816--47608909	35	2.7	35	83	8	111	55	4	0	40	1.19
47609238--47609759	206	2.5	206	83	3	588	22	21	19	36	1.95
47609641--47609840	86	2.3	86	80	6	219	23	23	16	37	1.94
47609483--47610046	292	1.9	292	87	4	816	23	22	18	35	1.95
47621946--47622194	29	8.6	30	82	9	248	35	4	24	35	1.76
47621946--47622194	59	4.3	59	83	2	281	35	4	24	35	1.76
47623298--47623356	22	2.8	21	82	10	75	47	1	0	50	1.11
47624044--47624133	6	15.7	6	76	9	89	56	3	0	40	1.16
47624057--47624153	17	5.6	17	85	3	131	55	5	0	39	1.22
47624878--47625023	41	3.6	41	91	0	213	17	34	20	27	1.95
47648153--47648233	39	2.0	40	90	2	128	30	20	17	30	1.96
47648156--47648248	39	2.4	38	83	7	98	31	21	17	30	1.96
47657525--47657604	34	2.4	32	80	12	88	37	3	6	52	1.45
47657549--47657620	17	4.2	17	74	0	72	37	5	4	52	1.44
47657844--47657893	25	2.0	25	92	0	82	20	44	12	24	1.85
47659451--47659542	30	3.1	29	78	10	89	36	30	0	32	1.58
47659455--47659834	29	12.9	28	66	14	97	34	26	5	33	1.78
47659493--47659834	59	5.8	59	78	3	323	34	26	5	33	1.80
47659582--47659862	29	9.6	30	68	17	130	33	26	7	33	1.83
47661148--47661287	60	2.3	60	83	2	183	20	22	20	37	1.94
47662862--47662913	22	2.4	22	83	0	77	17	7	36	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47663012--47663388	82	4.5	84	90	5	604	46	3	6	42	1.47
47663387--47663435	23	2.1	23	85	7	64	44	6	6	42	1.54
47682138--47682183	13	3.7	13	77	5	51	32	0	0	67	0.91
47682140--47682192	26	2.0	25	86	13	72	30	3	0	66	1.10
47687872--47687937	33	2.0	33	90	0	105	24	15	21	39	1.91
47688032--47688397	41	9.0	41	78	11	281	26	22	26	24	2.00
47688054--47688376	83	3.9	83	77	12	254	26	22	26	24	2.00
47690698--47691399	49	14.2	49	74	13	332	46	2	5	45	1.37
47690719--47691421	18	41.3	18	63	20	144	46	2	4	46	1.36
47690973--47691074	8	12.8	8	71	18	52	48	0	2	49	1.16
47690953--47691032	31	2.6	31	95	0	142	48	0	5	46	1.24
47690698--47691399	289	2.4	292	92	4	1149	46	2	5	45	1.37
47690978--47691355	210	1.8	210	87	2	562	46	2	5	45	1.39
47691311--47691412	8	12.2	8	68	22	59	45	0	3	50	1.20
47691450--47691543	8	11.8	8	69	22	56	44	1	3	51	1.24
47692152--47692308	66	2.4	66	88	2	226	44	15	24	15	1.85
47692295--47692335	21	2.0	21	100	0	82	29	21	43	4	1.73
47692645--47692742	43	2.3	43	87	3	135	25	23	29	21	1.99
47692721--47692774	28	1.9	28	88	7	83	20	25	24	29	1.99
47697494--47697538	19	2.4	19	81	7	56	37	0	4	57	1.19
47699939--47699988	21	2.4	21	82	0	55	44	16	14	26	1.85
47699950--47699989	21	1.9	21	89	0	62	42	15	17	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47704031--47704086	8	6.6	8	76	15	51	16	3	0	80	0.85
47704028--47704087	22	2.6	22	76	5	66	16	3	0	80	0.85
47705529--47705573	19	2.4	19	81	7	56	37	0	4	57	1.19
47711321--47711369	23	2.2	22	82	10	55	63	4	10	22	1.43
47719336--47719365	13	2.3	13	100	0	60	26	0	26	46	1.53
47720557--47720656	23	4.3	23	78	13	98	13	22	22	43	1.87
47727365--47727416	23	2.3	23	93	3	88	21	17	9	51	1.73
47729659--47729691	6	5.5	6	89	10	50	0	15	0	84	0.61
47729656--47729697	17	2.4	17	85	14	59	0	14	0	85	0.59
47729667--47729697	11	2.9	11	95	4	55	0	16	0	83	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182