genome.fa.s9.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  74  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23424510--23424551	12	3.5	12	86	0	57	45	0	54	0	0.99
23427881--23428066	91	2.0	92	83	7	236	44	11	8	34	1.72
23439322--23439640	40	8.1	40	83	4	344	24	27	19	28	1.99
23456932--23456961	11	2.7	11	94	0	51	23	0	26	50	1.50
23462341--23462518	51	3.5	51	89	2	241	29	21	14	34	1.93
23469069--23469408	51	6.6	51	90	1	484	30	21	15	32	1.94
23473745--23473840	48	2.0	48	95	0	174	22	22	16	37	1.94
23474172--23474216	23	2.0	23	91	8	74	64	13	4	17	1.44
23487813--23487849	19	2.0	18	89	5	56	18	8	5	67	1.36
23488423--23488491	26	2.7	26	84	10	81	76	0	21	1	0.86
23488423--23488491	13	5.3	13	81	13	72	76	0	21	1	0.86
23488422--23488493	7	9.7	7	80	16	65	77	0	20	1	0.84
23493092--23493130	20	1.9	21	94	5	71	15	12	5	66	1.41
23505478--23505512	14	2.4	15	90	4	54	28	14	0	57	1.38
23509697--23509738	20	2.1	20	86	0	57	45	2	9	42	1.49
23514156--23514230	28	2.7	28	81	8	73	78	6	6	8	1.08
23523526--23523583	28	2.1	28	100	0	116	22	27	24	25	2.00
23529060--23529116	26	2.2	26	80	0	69	54	1	1	42	1.21
23531731--23531785	23	2.5	22	77	11	58	36	3	0	60	1.15
23532127--23532189	23	2.8	23	80	4	76	50	1	3	44	1.27
23549064--23549147	29	2.8	30	78	8	82	29	8	10	51	1.66
23550474--23550545	31	2.2	32	83	9	85	40	1	1	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23553280--23553534	109	2.4	108	79	12	246	40	13	12	32	1.83
23553339--23553551	109	2.0	108	84	6	279	40	12	11	35	1.79
23555353--23555408	18	3.2	18	89	2	87	10	0	37	51	1.37
23555741--23555779	20	2.0	20	89	0	60	23	17	20	38	1.93
23555691--23555830	69	2.0	70	83	4	176	20	22	18	38	1.93
23555810--23556158	49	7.1	49	81	4	375	21	25	15	37	1.93
23555760--23556234	98	4.8	97	80	4	425	22	25	14	37	1.92
23555810--23556158	147	2.4	147	85	3	443	21	25	15	37	1.93
23556247--23556837	99	6.0	98	75	12	450	25	20	17	36	1.95
23556287--23556819	298	1.8	291	85	4	755	26	20	17	35	1.95
23556260--23556836	199	2.9	198	78	7	590	25	21	17	35	1.95
23556873--23556992	40	3.0	40	87	0	168	27	21	10	40	1.87
23557959--23558004	16	2.8	17	83	12	60	0	13	4	82	0.81
23557960--23558013	12	4.6	12	79	11	51	1	11	5	81	0.93
23561682--23561894	109	2.0	108	84	2	284	39	12	12	35	1.81
23562182--23562251	26	2.7	24	80	10	59	67	5	10	17	1.39
23564728--23564813	20	4.3	20	77	5	75	9	29	20	40	1.84
23565389--23565448	29	2.1	29	90	0	93	26	25	26	21	2.00
23565494--23565539	21	2.2	21	84	0	56	19	17	39	23	1.92
23567247--23567306	26	2.3	26	85	0	84	30	23	21	25	1.99
23567745--23567780	15	2.5	14	90	4	54	0	16	0	83	0.65
23568418--23568482	26	2.5	26	97	0	121	41	13	15	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23582417--23582453	13	2.7	14	80	19	51	16	13	0	70	1.17
23591827--23591934	20	5.4	20	75	2	101	11	31	19	37	1.87
23597624--23597681	23	2.5	24	80	5	66	25	1	12	60	1.41
23598622--23598654	6	5.5	6	100	0	66	18	48	0	33	1.48
23600304--23600346	23	1.9	22	86	13	61	55	0	4	39	1.20
23612371--23612414	19	2.3	19	80	0	52	34	0	6	59	1.24
23623139--23623178	6	6.3	6	88	5	53	47	0	52	0	1.00
23623142--23623181	18	2.1	20	90	9	66	50	0	50	0	1.00
23623139--23623190	26	2.0	26	88	7	79	46	0	51	1	1.12
23623139--23623189	7	7.6	7	84	10	54	47	0	50	1	1.12
23623401--23623439	21	1.9	19	90	10	60	56	0	0	43	0.99
23626621--23626659	21	1.9	19	90	10	60	56	0	0	43	0.99
23628221--23628254	12	2.9	11	87	12	50	2	0	26	70	1.01
23630071--23630109	21	1.9	19	90	10	60	56	0	0	43	0.99
23632061--23632125	27	2.4	27	84	2	87	29	33	23	13	1.93
23632313--23632366	27	2.0	27	82	7	65	33	0	3	62	1.12
23632419--23632456	17	2.4	17	91	8	62	28	0	7	63	1.23
23646112--23646151	14	2.9	14	88	3	64	37	15	2	45	1.59
23654543--23654655	42	2.7	42	86	2	147	24	23	27	23	2.00
23655231--23655275	21	2.1	21	83	0	54	33	20	31	15	1.93
23666252--23666539	52	5.5	52	92	0	468	27	13	22	36	1.92
23671783--23671837	26	2.1	26	96	0	101	23	29	1	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23672168--23672320	20	7.7	20	76	8	123	13	30	17	38	1.88
23672168--23672292	40	3.1	40	77	2	144	10	31	17	40	1.83
23672168--23672321	40	3.8	40	78	1	139	12	30	17	38	1.88
23672168--23672330	80	2.0	80	82	4	195	12	31	17	37	1.88
23673979--23674022	2	22.5	2	84	13	56	50	0	4	45	1.22
23692379--23692422	23	2.0	22	90	4	70	79	4	11	4	1.02
23692633--23692696	31	2.1	30	82	5	76	53	15	12	18	1.73
23693884--23694132	109	2.4	105	80	8	265	40	15	12	31	1.85
23693930--23694136	109	1.9	109	89	0	324	41	15	13	30	1.85
23700113--23700149	14	2.7	14	88	12	51	70	2	13	13	1.28
23708156--23708226	24	3.1	24	62	22	62	29	5	25	39	1.78
23708154--23708241	44	2.0	44	97	0	167	31	4	26	37	1.76
23708653--23708889	51	4.6	51	84	5	300	32	14	23	29	1.94
23714883--23715170	51	5.6	51	90	2	427	32	13	22	30	1.93
23717042--23717085	21	2.1	21	83	8	54	2	27	11	59	1.44
23720687--23720742	16	3.5	16	92	0	94	33	5	32	28	1.80
23723860--23723916	28	2.0	28	100	0	114	36	17	21	24	1.94
23724630--23724711	24	3.4	24	89	0	128	24	21	28	25	1.99
23727658--23727716	28	2.1	28	81	6	66	50	3	22	23	1.63
23728413--23728457	19	2.3	20	78	17	51	37	2	4	55	1.32
23729257--23729286	15	1.9	16	93	6	53	20	13	0	66	1.24
23729266--23729312	22	2.2	22	88	3	69	17	6	2	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23732035--23732081	18	2.7	17	84	15	69	19	4	0	76	0.95
23734456--23734516	22	2.8	22	82	7	63	18	9	1	70	1.23
23752321--23752582	30	8.8	29	76	8	186	36	24	2	37	1.70
23752321--23752582	60	4.4	60	79	5	289	36	24	2	37	1.70
23752321--23752584	90	2.9	90	78	6	277	35	23	2	37	1.69
23761336--23761587	85	3.0	83	87	2	342	38	17	21	23	1.93
23761421--23762211	208	3.8	208	91	0	1231	38	16	21	23	1.93
23761630--23761795	85	2.0	85	87	0	242	37	15	22	24	1.93
23761713--23761804	48	1.9	48	86	4	132	39	17	21	21	1.93
23761681--23761955	123	2.2	122	71	16	260	37	16	22	24	1.93
23761842--23762003	85	1.9	85	87	0	234	38	16	22	22	1.92
23762045--23762296	85	3.0	85	89	1	371	37	15	22	25	1.93
23762137--23762306	48	3.8	48	72	16	164	40	14	21	23	1.91
23761842--23762796	293	3.3	292	86	1	1318	38	16	21	24	1.93
23762130--23762504	208	1.8	208	86	1	545	37	16	21	24	1.93
23762338--23762570	85	2.7	85	82	2	263	36	15	23	24	1.94
23762424--23763005	208	2.8	209	82	3	690	38	15	20	24	1.92
23762632--23762796	85	1.9	85	83	2	215	38	13	23	24	1.91
23762636--23763299	293	2.3	294	84	0	873	39	16	21	23	1.92
23762846--23763090	85	2.9	85	85	0	328	40	16	20	22	1.91
23763137--23763298	85	1.9	85	89	0	252	38	14	24	22	1.91
23763427--23763564	48	2.9	48	87	0	204	39	15	21	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23762924--23763513	209	2.8	209	88	1	831	39	16	20	23	1.92
23763645--23763716	37	1.9	37	85	0	99	34	13	19	31	1.91
23763218--23763761	256	2.1	257	89	1	822	38	17	21	22	1.93
23764212--23764299	43	2.0	43	89	4	133	45	6	4	43	1.51
23765862--23766009	59	2.5	59	77	3	154	34	25	3	36	1.73
23765794--23766016	29	7.6	30	74	8	163	34	23	3	38	1.71
23765794--23766023	88	2.6	87	77	10	227	35	23	3	38	1.72
23767557--23767614	23	2.5	23	91	5	91	44	13	12	29	1.80
23767557--23767621	23	2.8	22	82	13	78	44	12	12	30	1.79
23768758--23768803	17	2.9	15	81	15	56	69	2	2	26	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182