genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  100  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33018210--33018878	351	1.9	351	85	6	926	27	18	14	40	1.89
33018530--33024852	216	28.9	216	73	10	4153	27	17	14	40	1.89
33018530--33024852	431	14.4	430	71	12	3319	27	17	14	40	1.89
33022890--33022928	19	2.1	19	90	9	62	23	5	17	53	1.63
33023524--33024846	423	3.1	420	84	4	1622	27	18	13	40	1.88
33027066--33027100	15	2.3	15	100	0	70	48	5	17	28	1.69
33030891--33033143	216	10.5	216	83	2	2728	28	17	13	40	1.88
33030891--33033143	646	3.5	645	83	3	2802	28	17	13	40	1.88
33034590--33036544	216	9.1	215	84	2	2292	27	18	13	40	1.88
33034590--33036543	863	2.3	863	84	2	2472	27	18	13	40	1.88
33036904--33036994	39	2.3	39	94	0	164	24	6	14	54	1.63
33037048--33037142	32	3.0	32	96	0	172	30	11	20	37	1.88
33037435--33037467	10	3.3	10	91	0	57	18	39	9	33	1.82
33038136--33040807	216	12.4	215	83	3	3039	28	17	13	40	1.88
33038139--33040807	865	3.1	862	90	1	3917	28	17	13	40	1.88
33040707--33040909	103	2.0	104	83	2	257	29	12	15	42	1.84
33040491--33041127	319	2.0	320	86	3	890	28	16	14	41	1.87
33040810--33041511	216	3.3	215	83	4	761	30	16	13	39	1.87
33040275--33041342	535	2.0	536	86	2	1500	29	16	13	40	1.86
33041814--33041927	48	2.3	48	86	3	147	24	8	13	53	1.67
33042288--33042416	39	3.3	39	94	0	222	27	6	14	51	1.68
33042288--33042436	78	1.9	78	84	4	203	29	6	15	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33042471--33042565	32	3.0	32	93	0	163	30	12	18	37	1.88
33043958--33044107	80	1.9	80	91	0	246	34	24	15	26	1.94
33044580--33049031	216	20.7	215	82	3	4977	28	18	13	39	1.89
33044580--33049031	647	6.9	645	87	2	5429	28	18	13	39	1.89
33044580--33049031	431	10.3	428	82	4	4840	28	18	13	39	1.89
33048811--33048850	21	2.0	21	85	5	55	30	7	12	50	1.68
33048870--33049192	171	1.9	170	85	3	443	26	21	14	38	1.91
33048703--33049426	386	1.9	386	82	4	906	27	19	13	39	1.90
33049040--33050636	216	7.4	215	81	3	1787	28	18	14	39	1.89
33049045--33050631	431	3.7	430	85	2	1929	28	18	13	39	1.89
33049075--33050636	647	2.4	645	86	2	2092	28	18	13	39	1.89
33050677--33050775	39	2.5	39	90	0	162	24	5	17	53	1.63
33050821--33050883	32	2.0	32	87	0	90	33	9	17	39	1.82
33051969--33052013	23	2.0	23	83	8	58	57	4	15	22	1.56
33054054--33054121	20	3.2	21	73	18	52	69	4	20	5	1.28
33054110--33054148	13	2.9	14	80	7	53	66	0	28	5	1.12
33054127--33054172	9	5.1	9	78	0	56	69	0	26	4	1.07
33054127--33054172	18	2.6	18	100	0	92	69	0	26	4	1.07
33057279--33057375	39	2.5	38	83	8	133	23	6	16	53	1.65
33058417--33095684	216	172.0	216	76	8	27866	28	18	14	39	1.89
33058417--33095684	431	86.0	431	78	7	29056	28	18	14	39	1.89
33074497--33095684	646	32.6	645	81	7	17272	28	18	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33095774--33095852	33	2.4	33	93	0	131	24	32	20	22	1.97
33095815--33096514	86	8.2	86	79	3	651	22	32	21	22	1.98
33096363--33096585	43	5.2	43	71	6	173	22	32	22	22	1.98
33096666--33097046	86	4.6	84	74	11	331	22	30	22	24	1.99
33096664--33096965	162	1.9	162	86	5	432	21	29	22	26	1.99
33097460--33098482	86	12.2	85	75	8	799	22	31	22	23	1.99
33098265--33098415	75	2.0	75	86	0	212	21	35	21	22	1.96
33098180--33098479	161	1.9	161	85	2	424	21	33	21	23	1.97
33098660--33098688	15	1.9	15	100	0	58	41	0	0	58	0.98
33098666--33098691	12	2.2	12	100	0	52	42	0	0	57	0.98
33106063--33106550	43	11.6	43	74	11	323	24	29	25	20	1.99
33106129--33106195	35	1.9	35	84	3	91	26	25	22	25	2.00
33106508--33106666	76	2.1	74	82	2	183	22	31	23	22	1.98
33108067--33109376	43	30.6	43	74	6	830	24	29	24	22	1.99
33108594--33108758	85	1.9	86	81	3	199	24	32	23	20	1.98
33109570--33109666	43	2.3	43	83	3	115	26	31	22	18	1.97
33109597--33109696	43	2.3	43	86	3	130	25	30	23	22	1.99
33109901--33110129	86	2.7	86	76	9	218	25	30	18	25	1.98
33110626--33111613	43	22.9	43	73	8	574	23	28	25	23	1.99
33111489--33111633	43	3.4	42	79	6	132	23	35	20	20	1.96
33111860--33112145	86	3.3	85	75	6	263	22	29	21	26	1.99
33112684--33113532	43	20.0	43	75	6	613	24	30	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33112865--33113268	205	2.0	205	81	3	483	23	30	25	20	1.98
33113372--33113580	86	2.4	86	83	6	237	25	30	22	21	1.99
33113900--33114040	76	1.9	76	80	3	167	24	28	21	24	1.99
33113998--33114319	86	3.7	86	81	4	331	22	27	23	26	1.99
33114851--33115584	43	17.1	43	78	2	580	21	27	27	23	1.99
33115438--33115706	86	3.1	86	79	8	257	22	30	23	24	1.99
33115547--33115734	85	2.2	86	83	7	231	23	32	22	21	1.98
33116084--33116233	43	3.5	42	66	10	97	20	31	22	26	1.98
33116012--33116316	85	3.6	86	81	4	332	23	29	21	25	1.99
33116012--33116316	86	3.6	86	82	0	281	23	29	21	25	1.99
33116966--33118096	86	13.2	86	79	4	1037	23	31	22	23	1.99
33116994--33118096	171	6.4	170	78	5	1029	23	31	22	23	1.99
33117740--33117868	42	3.0	43	66	11	104	20	33	23	22	1.97
33117719--33118087	43	8.6	42	64	12	153	22	33	21	22	1.98
33120652--33120694	18	2.5	17	80	3	50	41	2	2	53	1.26
33122335--33122519	29	6.4	29	79	8	162	32	26	3	36	1.74
33124160--33124268	17	6.3	17	80	8	103	41	1	3	53	1.29
33124175--33124268	6	16.2	6	68	14	63	41	2	2	54	1.24
33124160--33124268	35	3.1	34	80	3	128	41	1	3	53	1.29
33124160--33124268	52	2.1	52	86	6	150	41	1	3	53	1.29
33124155--33124248	12	8.0	12	70	11	52	39	1	4	55	1.27
33124209--33124264	29	1.9	29	85	7	78	41	3	1	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33125936--33126055	29	4.2	29	82	5	145	33	24	4	38	1.74
33125951--33126056	29	3.7	29	85	0	149	33	23	3	38	1.73
33125956--33126125	58	2.9	57	84	2	196	35	23	4	37	1.74
33125951--33126120	29	5.8	30	75	10	127	33	24	4	38	1.74
33126391--33126584	96	2.0	98	88	2	293	26	17	18	37	1.93
33138063--33138698	39	16.4	39	67	9	282	24	30	19	25	1.98
33138057--33138578	155	3.4	155	84	2	652	24	30	19	26	1.98
33138057--33138578	78	6.7	78	83	1	625	24	30	19	26	1.98
33139092--33139138	17	2.8	17	93	0	76	36	0	8	55	1.31
33139088--33139163	17	4.4	17	81	5	71	40	1	5	52	1.32
33140832--33141117	29	9.8	29	78	7	249	35	24	2	37	1.69
33151859--33151908	14	3.9	13	76	12	50	4	28	0	68	1.08
33151873--33151936	23	2.7	24	78	9	69	3	23	0	73	0.97
33151871--33151935	29	2.2	30	81	13	82	3	24	0	72	0.99
33151871--33151935	11	5.6	11	71	16	51	3	24	0	72	0.99
33154866--33154895	10	3.0	10	90	0	51	33	10	36	20	1.86
33155384--33155697	86	3.7	86	84	3	382	23	30	22	22	1.99
33155383--33155627	43	5.7	43	67	11	151	22	31	23	22	1.98
33155377--33155696	172	1.9	172	88	1	489	24	30	22	22	1.99
33155389--33155740	172	2.0	172	82	2	420	24	30	22	22	1.99
33155389--33155795	172	2.4	172	80	3	417	23	30	22	23	1.99
33155879--33156075	86	2.3	86	82	6	222	21	26	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33156917--33157555	86	7.6	86	74	6	457	22	28	23	24	1.99
33157067--33157454	171	2.3	172	83	1	501	22	30	22	23	1.99
33157939--33157966	14	2.0	14	100	0	56	21	35	7	35	1.81
33162951--33163681	86	8.7	85	80	7	737	22	30	22	24	1.99
33163006--33163144	43	3.2	43	68	11	113	20	29	24	25	1.99
33163092--33163323	76	3.0	76	82	2	259	22	30	21	25	1.99
33163300--33163681	43	8.9	43	66	17	166	23	31	22	22	1.98
33165622--33165648	11	2.5	11	100	0	54	37	7	33	22	1.82
33168505--33169123	216	2.9	214	85	2	846	41	13	16	28	1.86
33177012--33177737	43	16.9	43	74	7	515	23	30	25	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182