genome.fa.s9.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  82  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25847497--25847537	19	2.2	19	86	4	57	75	2	17	4	1.08
25847509--25847553	19	2.4	18	82	10	54	68	0	20	11	1.19
25847560--25847610	18	2.8	18	87	3	57	60	0	25	13	1.33
25847568--25847610	18	2.4	18	92	0	68	60	0	23	16	1.35
25848116--25848196	24	3.4	24	84	0	99	49	7	14	28	1.70
25857551--25857600	24	2.1	23	82	10	57	34	6	2	58	1.34
25862389--25862419	16	1.9	16	93	0	53	25	0	0	74	0.82
25864553--25864596	18	2.4	18	84	0	52	54	20	15	9	1.68
25864581--25864634	23	2.3	23	96	0	99	44	20	24	11	1.83
25864642--25864675	13	2.5	14	90	9	61	82	5	0	11	0.83
25866984--25867041	21	2.8	21	100	0	116	44	12	29	13	1.80
25875336--25875408	32	2.3	30	79	13	76	65	2	0	31	1.06
25875818--25875885	18	3.8	18	76	5	57	26	4	2	66	1.25
25876428--25876478	10	5.2	10	72	13	52	66	3	3	25	1.26
25876999--25877257	90	2.9	90	83	6	321	37	18	11	32	1.86
25877359--25877411	26	2.0	26	82	10	63	67	0	1	30	1.01
25882297--25882364	30	2.3	28	83	14	84	54	0	4	41	1.20
25882355--25882543	50	3.8	50	80	13	214	59	1	13	25	1.42
25882417--25882568	16	9.2	16	69	17	80	59	0	13	25	1.39
25882342--25882544	11	18.1	11	68	20	57	58	0	13	27	1.43
25882371--25882569	22	9.0	21	65	21	70	59	1	13	26	1.41
25882740--25882818	40	2.0	40	82	7	97	56	1	3	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25882968--25882997	14	2.1	14	93	0	51	60	0	0	40	0.97
25883219--25883267	22	2.3	21	89	6	73	38	28	12	20	1.89
25888993--25889151	87	1.8	86	84	9	216	28	15	23	32	1.95
25890562--25890609	6	8.3	6	81	9	55	41	0	6	52	1.27
25890563--25890609	17	2.8	17	90	6	69	42	0	6	51	1.27
25891249--25891289	19	2.2	19	86	0	55	41	0	7	51	1.30
25891397--25891442	13	3.6	12	88	11	65	58	0	2	39	1.10
25891629--25891674	24	1.9	24	86	0	65	60	6	15	17	1.55
25891680--25891713	17	1.9	18	88	5	52	38	11	17	32	1.86
25892646--25892932	29	9.8	28	66	14	123	33	23	4	38	1.74
25892623--25893080	59	7.8	59	84	3	534	34	26	3	36	1.73
25892638--25893109	176	2.7	173	85	6	601	33	27	3	36	1.73
25892623--25893104	117	4.1	117	84	4	580	34	25	3	36	1.72
25892489--25893065	30	19.6	30	67	17	180	36	24	3	36	1.71
25894069--25894300	113	2.0	114	99	0	457	25	17	19	37	1.94
25897875--25897903	9	3.0	10	90	10	51	79	0	20	0	0.74
25898698--25898774	7	11.1	7	81	13	72	85	1	10	2	0.75
25898718--25898770	1	53.0	1	80	0	61	90	1	3	3	0.59
25898693--25898774	6	13.3	6	79	17	55	85	1	10	2	0.75
25900039--25900511	100	4.7	99	84	5	574	38	19	26	15	1.91
25900087--25900452	50	7.3	50	69	12	200	38	19	27	14	1.91
25900039--25900511	201	2.4	200	84	3	605	38	19	26	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25900598--25902571	92	21.5	92	95	0	3381	33	13	17	34	1.89
25904033--25904078	13	3.6	12	85	11	56	56	0	4	39	1.19
25905142--25905301	30	5.3	29	82	5	169	36	23	2	36	1.69
25905120--25905532	59	7.0	60	87	6	267	34	26	3	35	1.73
25905124--25905288	90	1.8	89	83	11	221	40	22	3	34	1.70
25905245--25905540	29	10.0	29	70	20	170	31	27	4	36	1.78
25905281--25905562	30	9.5	29	68	16	159	31	27	3	36	1.75
25905254--25905570	59	5.4	59	92	1	460	31	27	4	35	1.77
25905142--25905361	89	2.5	90	77	10	202	35	25	2	36	1.70
25918845--25918873	14	2.0	15	93	6	51	27	6	13	51	1.66
25921891--25921967	21	3.7	21	77	6	84	32	23	14	29	1.94
25930862--25930966	55	1.9	55	96	0	192	49	19	4	26	1.68
25932463--25932518	28	2.0	29	96	3	105	28	10	33	26	1.90
25935394--25935446	19	2.8	19	81	15	65	79	1	18	0	0.83
25935415--25935446	9	3.4	10	91	8	50	84	0	15	0	0.63
25936944--25937022	40	2.0	41	94	2	142	58	5	20	16	1.57
25937474--25937511	13	2.7	15	88	8	53	50	10	2	36	1.51
25942675--25942705	13	2.4	13	94	0	53	0	9	3	87	0.66
25942970--25943012	18	2.5	17	85	7	59	20	18	16	44	1.87
25945403--25945445	20	2.2	20	91	0	68	25	11	41	20	1.86
25951895--25951921	13	2.1	13	100	0	54	33	37	7	22	1.82
25953023--25953117	38	2.6	37	80	6	97	32	22	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25969269--25969321	23	2.2	24	86	6	72	16	5	5	71	1.25
25971086--25971143	3	20.3	3	80	16	70	68	0	31	0	0.89
25971079--25971143	30	2.2	30	83	10	80	67	1	30	0	1.00
25971089--25971143	27	1.9	29	89	10	87	69	0	30	0	0.89
25971534--25971584	17	3.0	17	83	11	61	23	15	5	54	1.63
25974046--25974089	23	2.0	22	86	4	61	15	4	4	75	1.14
25993653--25993721	17	4.0	17	76	1	66	20	20	11	47	1.80
26000762--26000799	18	2.1	19	85	5	51	71	0	15	13	1.16
26000760--26000799	17	2.2	17	86	8	53	70	0	15	15	1.18
26000901--26001003	53	2.0	51	88	3	152	30	10	6	52	1.62
26001045--26001097	9	6.0	9	76	10	56	32	3	1	62	1.24
26001045--26001094	26	1.9	26	88	8	75	34	4	2	60	1.27
26007657--26007734	12	6.8	12	75	16	76	73	15	2	8	1.19
26007643--26007756	32	3.5	32	82	7	106	69	16	4	9	1.32
26007643--26007726	44	1.9	44	87	4	125	72	14	2	10	1.21
26007728--26007792	34	1.9	34	84	6	87	61	23	9	6	1.48
26007753--26007821	22	3.2	22	84	12	97	68	20	5	5	1.32
26013728--26013772	21	2.1	22	91	4	74	57	2	24	15	1.49
26029806--26029831	6	4.3	6	100	0	52	69	0	0	30	0.89
26030380--26030419	21	1.9	21	89	0	62	35	22	17	25	1.95
26030705--26030798	33	2.8	34	96	3	172	43	9	4	42	1.56
26034794--26034971	41	4.3	41	84	1	230	36	11	25	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26034794--26035008	41	5.2	40	78	8	175	36	10	25	27	1.88
26034794--26035008	82	2.6	81	81	6	209	36	10	25	27	1.88
26046736--26046778	6	6.8	6	80	19	52	79	0	20	0	0.74
26046738--26046778	13	3.2	13	83	10	57	80	0	19	0	0.71
26046738--26046776	21	1.9	20	94	5	69	79	0	20	0	0.73
26048299--26048352	18	3.1	18	78	13	67	31	18	11	38	1.86
26051797--26051857	26	2.3	26	82	0	77	26	21	22	29	1.99
26061458--26061516	27	2.2	27	81	6	66	30	25	22	22	1.99
26061532--26061601	27	2.6	27	88	0	95	32	24	17	25	1.96
26061559--26061623	27	2.4	27	84	5	78	32	24	15	27	1.95
26061612--26061687	28	2.7	28	81	4	82	31	23	17	27	1.97
26062929--26062961	16	2.1	16	88	5	50	45	12	0	42	1.41
26067296--26067482	52	3.6	52	87	1	259	37	24	12	25	1.90
26072292--26072354	17	3.6	17	80	2	81	34	6	3	55	1.41
26072280--26072356	35	2.2	36	84	11	106	36	6	2	54	1.40
26072596--26072655	25	2.4	25	91	0	93	23	43	11	21	1.85
26073104--26073168	13	4.9	13	75	7	60	60	3	3	33	1.28
26073104--26073169	27	2.5	26	77	2	78	60	3	3	33	1.27
26074145--26074297	29	5.2	28	74	17	116	32	24	4	37	1.76
26074145--26074473	59	5.6	57	82	11	332	32	26	5	35	1.79
26074134--26074473	117	2.9	117	81	10	392	33	26	5	35	1.79
26074226--26074442	29	7.5	27	71	22	122	33	26	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26074280--26074505	29	7.8	29	68	18	112	30	27	7	33	1.85
26074460--26074520	29	2.1	29	87	3	88	27	27	14	29	1.95
26080112--26080195	6	14.3	6	78	12	68	82	2	15	0	0.78
26080112--26080190	17	4.9	16	76	11	90	83	2	13	0	0.75
26080112--26080190	14	5.6	14	76	15	74	83	2	13	0	0.75
26080112--26080190	41	1.9	42	87	7	117	83	2	13	0	0.75
26081420--26081703	48	5.9	48	83	5	374	37	24	27	10	1.89
26081420--26081701	98	2.9	95	84	6	377	37	24	26	10	1.89
26081409--26081698	146	2.0	146	89	2	449	37	25	26	10	1.88
26082265--26082318	18	3.2	17	82	7	74	42	3	1	51	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182