genome.fa.s9.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  119  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38493720--38493758	14	2.7	14	81	18	53	66	0	5	28	1.12
38494936--38494997	31	2.1	30	84	6	81	37	8	11	43	1.70
38495197--38495268	29	2.4	30	80	11	85	47	13	6	31	1.70
38495893--38495955	24	2.6	24	87	0	90	49	9	14	26	1.74
38507193--38507262	30	2.3	30	90	4	106	28	24	11	35	1.90
38507210--38507349	30	4.7	30	74	4	113	37	19	7	35	1.81
38507796--38508022	109	2.1	104	81	4	247	30	14	18	36	1.91
38512517--38512591	1	75.0	1	72	0	51	85	1	12	1	0.73
38512527--38512594	19	3.4	19	77	15	75	82	1	16	0	0.75
38512534--38512589	23	2.5	23	94	2	96	85	1	12	0	0.67
38512517--38512591	12	6.2	12	77	14	73	85	1	12	1	0.73
38513617--38514092	148	3.2	149	82	4	471	32	16	31	18	1.94
38513533--38514269	99	7.5	98	79	6	588	32	16	32	18	1.93
38513533--38514270	49	15.0	48	75	8	569	32	16	32	18	1.93
38514388--38515260	78	11.2	76	79	7	771	30	26	17	26	1.97
38514389--38515261	38	22.4	38	76	8	729	30	26	17	26	1.97
38514388--38515260	116	7.5	115	79	8	670	30	26	17	26	1.97
38516077--38516119	22	2.0	22	81	9	52	53	11	18	16	1.72
38516936--38517103	60	2.8	59	79	1	174	37	22	4	36	1.73
38517010--38517094	30	2.8	30	92	0	143	40	21	0	38	1.53
38517138--38517220	30	2.7	31	68	15	75	30	12	2	55	1.49
38517594--38517844	109	2.3	106	80	6	267	30	13	17	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38524062--38524118	24	2.4	24	87	0	78	52	5	15	26	1.64
38524074--38524120	24	2.0	24	95	0	85	57	6	8	27	1.53
38531911--38531996	24	3.6	24	88	0	136	23	24	25	26	2.00
38537255--38537299	1	45.0	1	95	0	81	2	97	0	0	0.15
38537939--38537963	13	1.9	13	100	0	50	24	24	20	32	1.98
38538416--38538483	30	2.3	30	82	7	77	38	4	30	26	1.76
38538434--38538552	30	4.0	30	78	8	111	30	5	27	36	1.78
38538475--38538699	59	3.8	59	80	8	174	32	6	24	36	1.82
38538475--38538708	30	7.9	29	82	7	206	32	6	25	35	1.81
38544822--38544857	16	2.1	17	90	10	56	63	0	30	5	1.17
38545647--38545703	18	3.1	18	82	5	60	56	1	1	40	1.20
38548337--38548398	30	2.0	30	84	3	79	19	35	1	43	1.61
38550915--38550990	21	3.6	21	74	0	62	31	22	11	34	1.90
38555636--38555765	24	5.4	24	91	0	206	26	28	23	21	1.99
38559847--38559976	24	5.4	24	89	1	199	28	24	22	24	1.99
38559820--38559980	48	3.3	48	85	4	207	31	24	20	24	1.98
38559962--38560022	27	2.2	27	88	2	86	32	26	16	24	1.96
38559978--38560038	27	2.3	27	97	0	113	37	21	16	24	1.93
38561715--38561856	51	2.8	51	91	1	230	27	21	14	35	1.93
38565397--38565575	30	6.0	30	77	13	129	34	18	6	40	1.76
38565374--38565539	60	2.8	61	76	11	171	34	18	4	42	1.69
38565332--38565523	30	6.4	30	74	13	153	33	21	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38565348--38565547	60	3.3	59	74	12	156	33	19	5	41	1.75
38567534--38567572	12	3.2	12	81	0	51	48	12	23	15	1.79
38573629--38574162	50	10.8	50	79	5	557	33	16	31	18	1.93
38573620--38574169	99	5.6	100	81	5	591	33	17	30	18	1.94
38574201--38574416	40	5.4	41	72	16	193	30	24	17	27	1.97
38574190--38574417	78	2.9	79	86	3	307	31	23	17	27	1.97
38576368--38576581	30	7.3	30	75	13	162	35	23	2	38	1.70
38576384--38576581	59	3.3	60	81	6	203	36	21	3	38	1.69
38576480--38576601	59	2.1	58	80	4	129	36	21	3	38	1.70
38577560--38577652	38	2.4	38	83	0	105	17	19	30	33	1.95
38577598--38577672	38	2.0	38	81	5	89	18	21	29	30	1.97
38578343--38578408	30	2.2	30	97	2	125	33	19	13	33	1.91
38582894--38582941	13	3.8	12	76	10	51	64	0	2	33	1.05
38583044--38583086	20	2.1	21	82	4	52	25	0	4	69	1.07
38583066--38583100	16	2.2	15	90	10	52	31	0	0	68	0.90
38583052--38583117	19	3.6	19	76	15	66	30	3	1	65	1.17
38583905--38583947	17	2.5	17	81	11	52	41	0	37	20	1.53
38604121--38604158	18	2.1	18	85	9	51	76	2	18	2	1.02
38607804--38607956	71	2.2	71	92	1	254	23	22	20	33	1.97
38619977--38620015	20	2.0	20	94	0	69	35	2	7	53	1.43
38620820--38620852	13	2.5	13	90	9	50	45	6	0	48	1.27
38621838--38621905	30	2.2	31	81	5	75	25	14	8	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38625382--38625406	12	2.1	12	100	0	50	60	16	0	24	1.36
38626533--38626596	20	3.0	20	79	16	67	68	18	3	9	1.30
38626536--38626675	23	6.3	23	74	11	87	67	20	2	9	1.31
38626536--38626625	43	2.1	43	83	4	110	68	18	3	8	1.30
38626536--38626667	55	2.4	55	83	5	151	68	20	3	8	1.30
38626604--38626649	24	1.9	24	90	0	74	73	17	2	6	1.14
38626600--38626644	21	2.1	21	88	8	65	73	17	2	6	1.15
38626677--38626710	17	2.0	17	88	0	50	76	17	0	5	0.98
38634324--38634353	12	2.4	13	88	11	53	13	30	6	50	1.67
38647815--38648002	43	4.4	42	81	4	153	28	25	10	36	1.88
38647815--38648002	85	2.2	86	82	5	220	28	25	10	36	1.88
38651693--38651748	27	2.1	27	93	0	94	44	3	21	30	1.69
38660240--38660304	28	2.5	26	78	14	71	49	0	0	50	1.00
38660235--38660287	24	2.2	25	83	10	65	49	0	0	50	1.00
38660237--38660285	20	2.7	18	79	14	64	51	0	0	48	1.00
38667721--38667787	6	11.3	6	75	9	66	56	1	2	38	1.24
38667721--38667796	36	2.1	35	92	2	125	56	1	2	39	1.21
38667721--38667796	17	4.3	18	88	8	111	56	1	2	39	1.21
38668122--38668370	52	5.2	52	66	25	163	32	15	13	38	1.87
38668070--38669035	93	10.4	92	89	3	631	36	15	12	35	1.86
38668639--38668882	40	5.5	39	67	25	137	38	16	11	33	1.85
38668184--38669037	373	2.3	370	84	4	1087	37	15	12	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38668170--38669037	186	4.7	187	88	2	1082	36	15	12	34	1.85
38669080--38669259	100	1.8	99	84	6	247	13	23	22	41	1.89
38670512--38670551	9	4.4	9	84	12	55	0	15	5	80	0.88
38677942--38678008	6	11.3	6	75	9	66	56	1	2	38	1.24
38677942--38678017	36	2.1	35	92	2	125	56	1	2	39	1.21
38677942--38678017	17	4.3	18	88	8	111	56	1	2	39	1.21
38681608--38681664	23	2.5	23	91	0	87	33	19	24	22	1.97
38682697--38682763	32	2.2	32	81	7	77	35	11	2	49	1.55
38683844--38684048	42	4.9	42	87	2	270	22	14	28	34	1.94
38688827--38688894	21	3.2	21	62	22	52	16	25	7	51	1.70
38688809--38688893	42	2.0	42	100	0	170	18	23	7	50	1.71
38697706--38697734	10	2.9	10	100	0	58	37	0	0	62	0.96
38699881--38699908	14	2.0	14	100	0	56	57	0	21	21	1.41
38700373--38700403	16	1.9	16	93	0	53	32	0	3	64	1.09
38701307--38701361	3	18.3	3	100	0	110	67	0	0	32	0.91
38702778--38702821	23	1.9	23	95	0	79	31	15	15	36	1.90
38704043--38704071	14	2.0	15	93	6	51	0	13	3	82	0.79
38710047--38710091	23	2.0	23	100	0	90	26	15	22	35	1.94
38710576--38710623	24	2.0	24	83	4	60	35	14	6	43	1.71
38724939--38724983	14	2.9	15	81	18	56	51	2	0	46	1.13
38726148--38726175	2	14.0	2	100	0	56	50	0	0	50	1.00
38735728--38735795	31	2.2	31	86	2	91	26	19	10	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38735744--38735857	60	1.9	60	83	5	151	23	14	14	46	1.82
38736145--38736184	12	3.2	13	82	10	57	20	0	0	80	0.72
38737451--38737481	16	1.9	16	93	0	53	38	12	0	48	1.42
38738022--38738064	22	2.0	22	81	4	52	37	2	6	53	1.41
38751155--38751183	14	2.0	15	93	6	51	55	0	44	0	0.99
38751686--38751746	31	2.0	31	93	0	104	26	14	24	34	1.94
38754193--38754279	7	12.3	7	80	10	79	81	0	18	0	0.69
38754187--38754280	28	3.2	28	82	14	111	80	0	19	0	0.70
38754185--38754279	35	2.6	36	80	11	115	82	0	17	0	0.68
38754185--38754280	41	2.3	43	85	7	126	81	0	18	0	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182