genome.fa.s9.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  99  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32632070--32632290	50	4.4	50	75	4	176	37	19	20	22	1.94
32632071--32632260	100	1.9	100	84	2	256	38	17	20	23	1.93
32632056--32632290	100	2.3	100	77	7	251	37	19	21	22	1.94
32632113--32632311	100	2.0	100	80	2	220	38	19	22	19	1.94
32632244--32632633	49	7.9	49	80	3	390	35	15	27	21	1.93
32632264--32632633	147	2.5	147	83	1	445	35	15	26	22	1.93
32635925--32636045	60	2.0	60	98	0	233	56	6	9	28	1.56
32643358--32643407	24	2.1	23	82	10	57	34	6	2	58	1.34
32643385--32643549	58	2.9	57	80	8	192	44	1	1	52	1.22
32643705--32643776	16	4.5	16	89	3	110	26	30	6	36	1.83
32645007--32645042	12	3.0	12	95	0	63	11	38	0	50	1.38
32648756--32648959	38	5.3	39	78	5	161	33	14	18	33	1.91
32648756--32648832	39	2.0	38	85	7	102	37	12	16	32	1.87
32654274--32654352	38	2.1	37	85	2	104	34	10	21	34	1.87
32654374--32654451	37	2.1	37	92	0	129	25	20	29	24	1.99
32657803--32657833	16	1.9	16	93	0	53	61	0	16	22	1.34
32662625--32662934	103	3.0	102	94	1	539	29	17	11	40	1.86
32664483--32664524	21	2.0	22	90	4	68	40	7	11	40	1.69
32665035--32665179	49	3.0	48	78	9	150	34	16	20	28	1.94
32669286--32669365	28	2.9	27	77	7	79	31	23	12	32	1.92
32669245--32669383	56	2.5	54	75	12	127	32	21	15	30	1.94
32669358--32669572	28	7.7	28	71	2	153	33	21	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32669350--32669569	56	3.9	57	81	7	254	32	22	18	26	1.97
32669358--32669565	112	1.9	112	88	2	319	33	22	18	25	1.97
32674370--32674657	51	5.6	51	88	4	402	29	21	14	34	1.93
32681226--32681263	17	2.3	17	83	16	53	65	0	28	5	1.14
32681631--32682064	216	2.0	216	97	0	814	26	13	18	41	1.88
32682519--32682562	21	2.1	21	87	8	63	77	0	20	2	0.88
32682528--32682565	10	3.6	11	89	10	62	78	0	21	0	0.74
32682528--32682565	5	7.4	5	83	16	51	78	0	21	0	0.74
32682511--32682572	14	4.5	14	73	20	51	74	1	22	1	1.00
32687805--32687946	28	5.1	28	85	0	158	33	23	11	31	1.91
32687931--32687984	28	1.9	28	88	7	83	40	25	14	18	1.89
32687988--32688178	28	6.8	28	70	7	91	34	18	18	28	1.95
32687959--32688177	56	3.9	56	77	7	221	33	19	19	27	1.96
32687939--32688178	112	2.1	112	80	3	268	34	20	18	27	1.96
32704198--32704239	17	2.5	17	84	0	57	50	14	16	19	1.79
32709336--32709374	21	1.9	20	84	5	51	43	25	0	30	1.55
32715596--32715858	24	11.0	24	89	0	328	26	24	18	30	1.98
32715596--32715858	48	5.5	48	87	3	368	26	24	18	30	1.98
32739483--32739535	19	2.8	19	94	2	90	15	11	7	66	1.44
32740373--32740401	14	2.0	15	93	6	51	44	13	34	6	1.71
32740816--32740859	18	2.5	18	88	3	63	20	11	9	59	1.59
32749542--32749640	49	2.0	49	98	0	189	26	17	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32762461--32762499	17	2.3	17	86	8	53	15	12	15	56	1.68
32763081--32763127	6	7.5	6	83	9	58	80	2	17	0	0.80
32763081--32763127	13	3.8	12	81	10	58	80	2	17	0	0.80
32763081--32763127	19	2.5	19	86	6	60	80	2	17	0	0.80
32770593--32770633	16	2.4	17	88	8	57	73	4	0	21	1.02
32770593--32770637	17	2.6	17	82	10	56	73	4	0	22	1.01
32770598--32770848	90	2.8	90	81	9	273	56	10	5	26	1.55
32771829--32771863	17	2.0	18	88	5	54	31	0	5	62	1.18
32775550--32775604	28	2.0	27	89	3	83	20	5	12	61	1.50
32775555--32775610	28	2.0	27	86	3	76	21	7	14	57	1.61
32777864--32777941	30	2.6	30	74	18	74	26	10	2	60	1.42
32781308--32781359	7	7.1	7	87	8	68	80	0	19	0	0.71
32781308--32781359	22	2.4	22	86	0	77	80	0	19	0	0.71
32783636--32783676	13	3.2	13	89	0	64	46	19	17	17	1.85
32783638--32783689	20	2.6	21	76	14	56	40	23	19	17	1.91
32783718--32783747	16	1.9	15	93	6	51	6	6	40	46	1.56
32783742--32783775	15	2.3	15	89	0	50	8	8	32	50	1.64
32783811--32783869	22	2.5	24	76	15	70	32	0	22	45	1.52
32790865--32790919	13	4.2	13	85	2	65	43	21	18	16	1.88
32790937--32790978	11	3.8	11	80	0	57	28	23	26	21	1.99
32791903--32792587	186	3.7	185	81	5	723	33	16	21	28	1.95
32792224--32792538	93	3.4	91	71	15	275	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32792597--32793044	49	9.1	49	74	7	282	36	16	26	21	1.94
32792715--32793044	98	3.4	97	78	3	320	35	15	26	22	1.94
32792726--32792992	147	1.8	148	81	2	340	35	15	26	22	1.94
32792725--32793044	147	2.2	146	78	3	329	35	15	26	21	1.94
32793807--32793859	21	2.5	22	73	11	58	64	7	20	7	1.44
32794881--32794951	30	2.4	30	79	9	74	28	11	2	57	1.47
32795861--32795902	22	1.9	22	85	0	57	35	16	19	28	1.93
32795898--32796025	48	2.7	48	85	4	161	35	17	17	29	1.93
32796275--32796337	15	4.6	14	77	13	53	49	14	6	30	1.68
32802863--32802922	29	2.1	28	81	3	66	61	10	16	11	1.55
32805477--32805527	18	3.1	17	77	8	52	50	0	1	47	1.12
32814869--32814922	24	2.3	24	87	3	74	29	18	20	31	1.96
32818709--32818783	24	3.1	24	90	0	114	28	22	21	28	1.99
32823352--32823376	13	1.9	13	100	0	50	56	16	8	20	1.65
32841710--32841873	79	2.1	79	96	0	301	25	9	7	56	1.58
32847229--32847660	194	2.3	187	82	4	508	28	17	25	28	1.98
32849231--32849261	6	5.2	6	92	0	53	3	16	45	35	1.63
32853801--32853962	30	5.4	30	78	8	125	33	18	7	40	1.79
32856979--32857007	8	3.6	8	100	0	58	44	0	0	55	0.99
32857624--32857669	24	1.9	24	86	8	67	21	0	17	60	1.35
32857686--32857765	29	2.8	29	82	1	90	41	7	21	30	1.80
32859190--32859415	59	3.8	59	86	5	319	52	7	7	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32859518--32859576	30	2.0	30	93	0	100	15	15	35	33	1.89
32859726--32859764	18	2.2	18	90	0	60	25	5	43	25	1.75
32859809--32859867	27	2.2	27	90	0	91	22	15	27	35	1.94
32861814--32861911	29	3.4	29	84	0	115	30	24	18	26	1.98
32866770--32866834	32	2.0	32	96	0	121	26	30	16	26	1.97
32872648--32872723	29	2.6	29	85	0	98	32	11	7	47	1.69
32872873--32872915	15	2.9	14	80	10	50	16	2	2	79	0.95
32873274--32873311	18	2.1	18	100	0	76	57	10	5	26	1.53
32874402--32874485	27	3.1	27	78	11	82	30	1	0	67	0.98
32882844--32882917	34	2.2	34	85	0	94	21	16	29	32	1.95
32882874--32882949	34	2.2	34	80	0	80	23	19	27	28	1.98
32885867--32886231	123	3.0	123	92	0	581	37	10	9	42	1.72
32892913--32893276	123	3.0	123	93	1	599	37	11	7	42	1.70
32893130--32893176	22	2.2	22	81	11	53	31	12	0	55	1.38
32898878--32899001	48	2.6	48	88	3	169	51	14	9	24	1.72
32898878--32899017	48	2.9	47	83	7	133	52	15	9	22	1.70
32900606--32900682	39	2.0	39	94	0	136	25	10	12	50	1.72
32906357--32906418	21	3.0	21	79	9	63	30	24	16	29	1.96
32910249--32910280	15	2.1	15	94	0	55	0	21	0	78	0.76
32910874--32910912	18	2.2	18	95	4	71	56	12	15	15	1.68
32910893--32910935	19	2.1	20	87	12	61	55	9	11	23	1.64
32919650--32919682	13	2.5	13	95	0	57	21	6	39	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32934659--32934699	15	2.9	14	82	10	57	73	9	4	12	1.24
32938609--32938669	29	2.1	30	87	9	90	13	16	9	60	1.58
32963424--32963458	17	2.1	17	100	0	70	22	20	28	28	1.98
32964274--32964395	48	2.5	48	91	0	199	52	13	9	24	1.70
32970828--32970950	48	2.5	48	90	1	192	52	13	8	25	1.70
32980910--32980936	11	2.5	11	100	0	54	22	18	37	22	1.95
32988230--32988266	18	2.1	18	89	0	56	27	24	10	37	1.88
32989480--32989521	20	2.2	18	87	8	57	0	14	7	78	0.95
32991657--33018527	216	124.7	216	82	3	29867	27	17	14	39	1.89
32991657--33018527	431	62.4	431	82	3	29842	27	17	14	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182