genome.fa.s9.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  155  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47730252--47730317	17	3.9	17	75	0	60	48	13	18	19	1.81
47730252--47730317	34	1.9	34	82	11	82	48	13	18	19	1.81
47734049--47734104	21	2.5	22	77	11	60	33	19	0	46	1.50
47736079--47736120	18	2.3	19	91	4	68	14	38	23	23	1.92
47736288--47736317	2	15.0	2	100	0	60	50	0	50	0	1.00
47739039--47739082	21	2.1	21	82	0	52	47	2	2	47	1.27
47739152--47739176	7	3.6	7	100	0	50	28	0	28	44	1.55
47740925--47740961	17	2.2	17	90	9	58	56	5	8	29	1.51
47745546--47745582	17	2.2	17	90	9	58	56	5	8	29	1.51
47747322--47748207	447	2.0	447	99	0	1763	32	16	12	38	1.86
47748259--47748308	24	2.0	25	85	11	68	62	0	0	38	0.96
47755548--47755573	3	8.7	3	100	0	52	30	0	0	69	0.89
47756246--47756287	21	2.0	21	90	4	68	57	0	0	42	0.99
47768186--47768236	25	2.0	25	85	14	70	37	0	0	62	0.95
47768288--47769173	447	2.0	447	99	0	1763	38	12	16	32	1.86
47770912--47770947	16	2.2	16	90	5	54	27	8	5	58	1.50
47775528--47775564	17	2.2	17	90	9	58	29	8	5	56	1.51
47777312--47777336	7	3.6	7	100	0	50	44	28	0	28	1.55
47778590--47778623	17	1.9	17	88	5	50	85	2	8	2	0.80
47780164--47780191	2	14.0	2	100	0	56	0	50	0	50	1.00
47780359--47780400	18	2.3	19	95	4	77	21	23	40	14	1.90
47786120--47786184	17	3.9	16	71	15	51	20	16	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47786734--47786779	11	4.3	11	81	10	51	82	0	10	6	0.83
47786734--47786779	21	2.1	22	88	4	67	82	0	10	6	0.83
47786736--47786777	18	2.5	17	85	11	59	85	0	11	2	0.68
47789007--47789059	23	2.3	23	96	0	97	50	9	18	20	1.74
47793120--47793289	41	4.2	41	89	1	227	28	21	33	15	1.95
47793268--47793311	22	2.0	23	86	4	63	36	22	25	15	1.94
47793356--47793395	20	2.0	20	85	0	53	50	5	0	45	1.23
47794021--47794100	6	13.7	6	75	10	58	38	0	2	58	1.11
47794001--47794099	18	5.6	17	84	6	117	38	0	4	57	1.18
47794011--47794087	34	2.2	36	79	13	72	40	0	3	55	1.18
47794789--47794846	21	2.8	21	84	7	82	50	0	1	48	1.11
47795951--47796266	29	10.8	29	81	5	296	35	25	4	34	1.77
47795951--47796266	59	5.4	59	86	1	384	35	25	4	34	1.77
47795971--47796261	88	3.3	88	80	8	340	35	24	4	35	1.77
47796244--47796408	58	2.8	60	78	5	151	34	22	3	39	1.72
47809280--47809324	19	2.4	19	81	7	56	37	0	4	57	1.19
47827451--47827492	21	2.0	21	90	4	66	71	7	7	14	1.29
47828309--47828351	19	2.3	19	84	8	52	58	4	0	37	1.19
47841223--47841353	58	2.2	60	82	2	149	39	3	22	35	1.69
47841223--47841383	28	5.5	31	66	20	85	39	3	21	34	1.71
47841366--47841660	29	10.1	30	81	10	308	34	5	25	35	1.78
47841361--47841680	59	5.5	59	85	4	341	34	4	25	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47841378--47841686	88	3.5	88	79	9	335	34	4	24	36	1.77
47842785--47842842	21	2.8	21	84	7	82	48	1	0	50	1.11
47842786--47842839	22	2.4	23	81	9	67	46	1	0	51	1.11
47843531--47843610	6	13.7	6	75	10	58	58	2	0	38	1.11
47843544--47843630	17	4.9	17	84	5	102	56	4	0	39	1.20
47843544--47843630	35	2.4	35	88	7	122	56	4	0	39	1.20
47844342--47844511	41	4.2	41	89	1	227	15	33	21	28	1.95
47850933--47850977	23	2.0	22	87	12	65	4	13	2	80	0.97
47850935--47850977	17	2.5	17	82	14	52	2	13	2	81	0.89
47850933--47850979	21	2.1	22	85	14	62	6	12	2	78	1.02
47851529--47851594	34	1.9	34	85	11	91	50	12	18	19	1.78
47857365--47857406	18	2.3	19	95	4	77	14	40	23	21	1.90
47874255--47874335	39	2.0	40	90	2	128	30	20	17	30	1.96
47874258--47874350	39	2.4	38	83	7	98	31	21	17	30	1.96
47880044--47880083	15	2.9	14	82	10	55	70	0	0	30	0.88
47883612--47883691	34	2.4	32	80	12	88	37	3	6	52	1.45
47883636--47883707	17	4.2	17	74	0	72	37	5	4	52	1.44
47883932--47883981	25	2.0	25	96	0	91	20	46	12	22	1.83
47884389--47884472	3	27.0	3	72	11	62	59	3	1	35	1.22
47884367--47884418	13	4.1	12	76	11	50	61	3	0	34	1.14
47884376--47884448	34	2.1	35	87	2	103	58	5	0	35	1.21
47885536--47885914	30	12.9	29	65	16	111	34	26	5	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47885546--47885918	59	6.4	59	78	5	319	34	26	5	34	1.79
47885666--47885946	29	9.6	30	68	17	130	33	26	7	33	1.83
47887237--47887376	60	2.3	60	83	2	183	20	22	20	37	1.94
47888952--47889003	22	2.4	22	83	0	77	17	7	36	38	1.78
47889311--47889437	38	3.2	38	66	20	96	48	4	5	40	1.47
47889103--47889482	83	4.5	84	92	3	631	47	3	6	42	1.46
47889315--47889451	45	3.2	44	66	21	119	48	4	6	40	1.49
47889481--47889529	23	2.1	23	85	7	64	44	6	6	42	1.54
47897777--47897857	39	2.0	40	90	2	128	30	20	17	30	1.96
47897780--47897872	39	2.4	38	83	7	98	31	21	17	30	1.96
47903564--47903603	15	2.9	14	82	10	55	70	0	0	30	0.88
47907131--47907210	34	2.4	32	80	12	88	37	3	6	52	1.45
47907155--47907226	17	4.2	17	74	0	72	37	5	4	52	1.44
47907451--47907500	25	2.0	25	96	0	91	20	46	12	22	1.83
47907908--47907991	3	27.0	3	72	11	62	59	3	1	35	1.22
47907886--47907937	13	4.1	12	76	11	50	61	3	0	34	1.14
47907895--47907967	34	2.1	35	87	2	103	58	5	0	35	1.21
47909055--47909433	30	12.9	29	65	16	111	34	26	5	34	1.78
47909065--47909437	59	6.4	59	78	5	319	34	26	5	34	1.79
47909185--47909465	29	9.6	30	68	17	130	33	26	7	33	1.83
47910756--47910895	60	2.3	60	83	2	183	20	22	20	37	1.94
47912471--47912522	22	2.4	22	83	0	77	17	7	36	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47912830--47912956	38	3.2	38	66	20	96	48	4	5	40	1.47
47912622--47913001	83	4.5	84	92	3	631	47	3	6	42	1.46
47912834--47912970	45	3.2	44	66	21	119	48	4	6	40	1.49
47913000--47913048	23	2.1	23	85	7	64	44	6	6	42	1.54
47916103--47916150	13	3.9	12	81	10	53	35	2	0	62	1.07
47916861--47917421	120	4.9	117	74	14	391	37	16	18	27	1.92
47916858--47917428	60	9.9	57	68	14	307	37	15	18	28	1.92
47917060--47917253	104	1.9	102	84	5	257	39	13	15	30	1.87
47917194--47917420	59	3.9	57	71	12	194	37	16	18	27	1.92
47918905--47918977	29	2.5	29	88	6	94	52	12	9	26	1.69
47920386--47920521	30	4.6	30	74	11	95	34	26	4	34	1.77
47920358--47920472	60	1.9	60	82	5	144	37	24	3	34	1.73
47920388--47920494	30	3.6	30	80	10	105	36	25	3	34	1.74
47937608--47937650	21	2.0	21	90	4	68	72	6	6	13	1.27
47938470--47938512	19	2.3	19	84	8	52	58	4	0	37	1.19
47946626--47946673	13	3.9	12	81	10	53	35	2	0	62	1.07
47947378--47947670	60	4.9	60	75	8	283	35	16	19	27	1.94
47947378--47947948	59	9.9	58	68	13	313	37	15	18	28	1.92
47947580--47947774	103	1.9	103	85	4	268	39	13	15	30	1.87
47947463--47947884	220	1.9	222	79	5	478	36	15	18	29	1.92
47949402--47949474	29	2.5	29	88	6	94	52	12	9	26	1.69
47950855--47950969	60	1.9	60	84	5	153	37	25	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47950885--47950991	30	3.6	30	80	10	105	36	25	3	34	1.74
47970017--47970059	21	2.0	21	90	4	68	72	6	6	13	1.27
47970879--47970921	19	2.3	19	84	8	52	58	4	0	37	1.19
47991094--47991136	21	2.0	21	90	4	68	72	6	6	13	1.27
47991956--47991998	19	2.3	19	84	8	52	58	4	0	37	1.19
48003560--48003628	17	4.5	17	70	20	62	39	2	0	57	1.13
48003564--48003622	27	2.2	27	90	0	91	38	3	0	57	1.15
48003560--48003634	11	6.8	11	73	8	55	40	2	0	57	1.13
48003867--48004123	41	6.3	41	77	8	182	24	27	27	20	1.99
48003893--48004123	82	2.8	81	87	2	329	24	28	27	19	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182