genome.fa.s9.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  107  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34688440--34688557	25	4.7	24	72	19	80	80	1	15	2	0.90
34688484--34688557	7	11.7	7	76	21	58	81	0	17	1	0.77
34688440--34688557	60	2.0	61	83	14	156	80	1	15	2	0.90
34689512--34689789	50	5.6	50	72	7	154	34	14	33	17	1.90
34690296--34691142	208	4.1	205	84	6	988	35	16	23	24	1.95
34691537--34691611	17	4.4	16	77	9	62	44	4	2	49	1.35
34691537--34691609	16	4.4	16	79	8	58	43	4	2	49	1.36
34693391--34693648	30	8.6	30	77	5	202	37	24	3	34	1.71
34693389--34693649	60	4.4	60	80	4	242	37	25	3	33	1.72
34693388--34693649	90	2.9	90	78	6	246	37	25	3	33	1.72
34693572--34693676	28	3.7	27	83	10	113	35	31	0	32	1.65
34693627--34693868	29	8.4	28	76	8	175	33	27	8	31	1.86
34693627--34693868	57	4.2	57	76	11	199	33	27	8	31	1.86
34711563--34711883	23	13.5	23	75	10	263	35	4	14	45	1.65
34711563--34711870	46	6.5	46	80	8	303	35	4	14	45	1.66
34711563--34711887	69	4.6	69	81	7	380	35	4	15	45	1.65
34711647--34711755	56	1.9	56	94	0	191	33	4	15	46	1.66
34711668--34711732	33	2.0	33	84	0	85	30	4	16	47	1.67
34720085--34720180	23	4.2	23	70	5	68	16	15	20	46	1.83
34720105--34720206	46	2.2	46	83	0	123	15	15	20	48	1.82
34722716--34722809	38	2.5	37	77	1	107	28	30	18	22	1.97
34722837--34722922	38	2.3	38	86	6	113	30	22	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34733384--34733427	24	2.0	21	86	13	61	75	6	18	0	1.02
34739289--34739324	11	3.2	11	88	4	54	86	0	13	0	0.58
34739292--34739324	17	1.9	17	88	11	50	84	0	15	0	0.61
34739864--34739943	38	2.1	38	88	4	117	27	27	16	28	1.97
34744137--34744212	38	2.0	38	92	0	125	18	17	11	52	1.74
34751212--34751250	20	2.0	20	85	10	53	69	7	12	10	1.37
34761821--34761853	11	3.1	11	91	4	50	36	0	30	33	1.58
34772252--34772302	27	1.9	26	88	4	75	11	13	21	52	1.72
34773370--34773535	23	7.5	23	76	10	159	44	22	21	11	1.84
34780668--34780725	27	2.1	28	90	3	91	6	29	0	63	1.20
34794988--34795251	131	2.0	131	100	0	528	40	17	11	30	1.85
34800968--34800997	14	2.2	14	94	5	53	36	10	23	30	1.87
34820069--34820115	24	2.0	24	87	8	69	8	10	25	55	1.62
34828611--34828659	25	2.0	25	83	0	62	77	0	16	6	0.96
34830052--34830080	13	2.1	14	93	6	51	44	0	55	0	0.99
34830769--34830805	19	1.9	19	94	0	65	67	2	0	29	1.04
34831400--34831460	32	1.9	32	96	0	113	39	18	11	31	1.86
34831659--34831689	14	2.3	13	94	5	53	77	0	3	19	0.90
34831672--34831718	19	2.3	20	85	7	60	68	6	2	23	1.24
34832446--34832503	6	10.0	6	72	20	52	50	3	0	46	1.18
34832446--34832489	18	2.4	19	85	14	65	47	4	0	47	1.22
34843954--34844000	15	3.1	15	84	6	51	34	25	6	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34853444--34853485	20	2.1	20	95	0	75	35	16	23	23	1.95
34861939--34861982	21	2.1	21	83	8	54	59	6	27	6	1.49
34862088--34862146	17	3.5	17	88	4	75	25	15	6	52	1.67
34862730--34862763	10	3.3	10	87	4	50	79	0	20	0	0.73
34868798--34868828	15	2.0	16	93	6	55	0	41	0	58	0.98
34881327--34881357	16	1.9	16	93	0	53	70	0	9	19	1.14
34889233--34889313	40	2.0	40	90	0	126	30	16	22	30	1.95
34901037--34901214	37	4.8	37	85	0	239	15	17	28	38	1.90
34901132--34901202	21	3.6	21	69	18	62	12	21	29	36	1.90
34903619--34903671	21	2.5	21	81	6	63	28	16	24	30	1.97
34904404--34904460	12	4.6	12	74	8	51	61	0	3	35	1.13
34911212--34911264	21	2.5	21	84	9	63	35	11	11	41	1.77
34922861--34922923	19	3.2	19	75	11	56	39	0	4	55	1.21
34924005--34924135	66	2.0	66	95	1	237	37	36	8	17	1.80
34925800--34925895	38	2.3	41	77	17	108	27	4	26	42	1.73
34925828--34925911	38	2.2	39	93	4	145	25	5	26	42	1.77
34929537--34929576	21	1.9	21	89	0	62	57	7	20	15	1.61
34931460--34931524	30	2.2	30	78	8	71	18	13	18	49	1.80
34938344--34938389	21	2.2	21	100	0	92	17	50	19	13	1.78
34938412--34938501	42	2.1	42	89	0	135	22	35	20	22	1.96
34940181--34940221	21	2.0	21	90	0	64	12	19	4	63	1.46
34949399--34949654	107	2.4	107	82	4	300	33	23	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34949473--34949667	109	1.8	107	84	4	266	31	25	16	26	1.96
34949430--34949681	107	2.3	107	80	5	258	32	24	16	26	1.96
34957281--34957319	21	1.9	20	89	5	60	17	30	0	51	1.46
34975793--34975980	102	1.8	102	86	6	270	23	29	3	43	1.71
34983830--34983913	35	2.5	32	77	20	91	27	9	16	46	1.78
34984093--34984186	42	2.2	42	88	0	134	51	19	0	29	1.47
34984093--34984226	42	3.2	42	82	7	121	48	22	0	29	1.51
34984226--34984272	24	2.0	24	91	0	76	36	21	21	21	1.96
34986483--34986542	27	2.1	27	82	11	68	61	3	13	21	1.46
34988750--34989077	98	3.4	98	79	2	381	19	25	17	37	1.93
34988827--34989059	49	4.8	48	69	9	168	19	24	18	36	1.94
35006015--35006051	17	2.3	17	86	9	51	64	0	0	35	0.94
35007057--35007139	39	2.1	40	82	6	98	53	10	6	30	1.60
35010379--35010436	27	2.2	26	84	3	71	46	18	20	13	1.83
35011582--35011735	78	2.0	78	81	0	182	24	13	19	42	1.88
35011600--35011727	39	3.3	39	70	0	121	25	14	18	41	1.89
35018609--35018753	78	1.9	78	82	2	184	22	16	22	38	1.93
35018829--35018893	29	2.2	29	94	0	112	20	24	24	30	1.98
35035933--35035969	10	3.6	10	85	7	56	78	10	0	10	0.97
35036992--35037110	59	2.0	58	87	4	168	35	25	1	37	1.66
35036991--35037112	30	4.1	29	86	7	165	34	26	1	37	1.66
35043153--35043632	49	9.8	49	68	13	263	36	17	26	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35043163--35043650	98	5.0	98	87	2	649	36	18	26	18	1.94
35044653--35044686	10	3.3	10	84	8	50	76	11	0	11	1.02
35045705--35045825	30	4.1	29	87	5	161	34	29	3	32	1.74
35045705--35045850	60	2.4	60	78	8	154	32	26	4	36	1.76
35047481--35047522	22	2.0	21	90	9	68	26	4	16	52	1.63
35073279--35073358	29	2.7	29	84	5	88	52	15	1	31	1.50
35074323--35074402	16	4.4	18	72	20	51	48	0	3	47	1.19
35074329--35074369	20	2.0	21	90	4	66	46	0	0	53	1.00
35074332--35074406	32	2.5	29	85	12	98	50	0	2	46	1.15
35083767--35083797	16	1.9	16	100	0	62	32	25	12	29	1.93
35087991--35088020	2	15.0	2	100	0	60	50	0	0	50	1.00
35092909--35092942	12	2.8	12	86	0	50	73	0	11	14	1.10
35101668--35101718	19	2.7	19	81	6	59	56	5	3	33	1.42
35101666--35101735	19	3.7	19	77	7	54	58	5	2	32	1.36
35101707--35101755	25	2.0	25	83	0	62	57	2	0	40	1.10
35101746--35101813	35	2.0	32	83	8	82	64	5	2	26	1.30
35102413--35102448	18	2.0	18	94	0	63	8	19	5	66	1.38
35112949--35112978	9	3.4	9	95	4	53	26	0	13	60	1.34
35113315--35113362	18	2.7	18	86	0	69	68	4	2	25	1.18
35114150--35114177	7	4.0	7	100	0	56	14	0	42	42	1.45
35115114--35115157	19	2.3	19	84	0	52	45	2	6	45	1.42
35115266--35115659	135	3.0	129	95	4	725	44	1	14	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35116483--35116584	16	5.8	16	67	28	55	11	19	29	39	1.87
35116480--35116608	37	3.5	37	89	0	186	12	19	29	38	1.88
35119309--35119681	50	7.5	50	79	6	301	24	21	14	39	1.91
35119308--35119812	50	10.1	50	79	4	288	23	22	15	38	1.92
35119422--35119791	149	2.5	148	73	10	331	22	24	15	37	1.93
35119671--35119862	100	1.9	100	83	2	251	20	26	16	36	1.93
35119686--35119862	50	3.5	50	80	4	187	20	26	16	36	1.94
35133614--35133696	43	1.9	43	80	9	98	16	19	34	28	1.94
35133625--35133784	53	3.0	53	81	3	196	20	18	34	26	1.96
35133680--35133868	41	4.3	41	75	17	173	20	14	34	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182