genome.fa.s9.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  180  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54950972--54951030	17	3.5	17	75	13	59	15	5	0	79	0.89
54951707--54951897	105	1.8	105	81	4	242	37	12	23	26	1.90
54952461--54952505	19	2.4	19	81	7	56	37	0	4	57	1.19
54952510--54952542	14	2.3	15	85	15	52	15	6	12	66	1.42
54953309--54953338	16	1.9	15	93	6	51	23	10	0	66	1.21
54953318--54953364	21	2.2	21	84	3	58	17	10	2	70	1.26
54955442--54955495	15	3.6	14	80	11	63	35	14	0	50	1.44
54955442--54955500	30	2.0	30	86	0	82	35	16	0	47	1.47
54955859--54955986	58	2.2	60	81	5	163	38	15	9	36	1.80
54955915--54956276	189	1.9	186	89	2	564	40	13	10	36	1.79
54956501--54956531	14	2.1	15	94	5	55	22	29	22	25	1.99
54956600--54956666	33	2.0	33	100	0	134	26	17	5	49	1.70
54957660--54957775	62	1.9	61	89	5	180	41	9	11	37	1.73
54957686--54957782	30	3.2	30	69	13	81	40	8	16	35	1.78
54963284--54963367	42	2.0	42	100	0	168	23	7	11	57	1.59
54965127--54965161	18	1.9	18	88	0	52	51	0	8	40	1.33
54965935--54965969	18	1.9	18	88	0	52	51	0	8	40	1.33
54970778--54970865	27	2.9	28	83	16	97	32	13	2	51	1.54
54970778--54970884	33	3.4	31	78	14	96	33	12	1	52	1.49
54970952--54970990	20	2.0	20	94	0	69	41	5	12	41	1.65
54975619--54975683	28	2.4	27	84	5	87	15	10	29	44	1.80
54977075--54977124	20	2.6	19	84	12	66	54	0	10	36	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54977075--54977121	18	2.4	19	86	10	60	51	0	10	38	1.37
54980296--54980413	41	2.9	41	94	0	200	24	26	22	27	2.00
54983942--54983975	2	17.0	2	100	0	68	50	0	0	50	1.00
54986189--54986222	15	2.3	15	89	0	50	29	11	0	58	1.33
54987175--54987304	60	2.2	60	81	5	165	36	15	10	37	1.81
54987235--54987591	188	1.9	189	92	1	599	40	13	10	36	1.78
54990419--54990461	16	2.7	16	81	0	50	27	9	2	60	1.40
54992109--54992172	30	2.1	30	83	11	78	39	9	12	39	1.75
54996575--54996648	27	2.7	27	81	4	87	28	32	20	18	1.96
54996662--54996720	13	4.5	13	81	8	66	18	16	18	45	1.85
54996649--54996720	26	2.7	26	83	8	92	19	18	18	44	1.87
54996649--54996718	33	2.2	32	84	2	95	18	17	18	45	1.85
54998842--54998895	23	2.3	23	87	9	74	61	1	11	25	1.40
55001756--55001788	18	1.9	17	88	11	50	45	0	6	48	1.27
55008124--55008224	37	2.6	37	73	9	87	22	19	26	30	1.98
55009519--55009547	9	3.0	10	90	10	51	20	0	0	79	0.74
55010218--55010252	18	1.9	18	88	0	52	51	0	8	40	1.33
55010981--55011015	18	1.9	18	88	0	52	51	0	8	40	1.33
55017148--55017188	23	1.9	23	85	14	61	31	0	9	58	1.31
55017141--55017192	21	2.5	20	75	21	54	34	1	7	55	1.39
55018678--55018727	18	2.8	18	79	11	50	20	34	2	44	1.63
55019958--55020000	3	14.3	3	100	0	86	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55023598--55023629	11	2.8	12	86	13	50	6	15	0	78	0.95
55046263--55046465	96	2.1	94	80	6	239	51	16	17	14	1.77
55047971--55048007	19	2.0	18	89	5	56	45	0	0	54	1.00
55059026--55059116	23	4.1	23	72	17	84	50	2	0	47	1.13
55064002--55064054	24	2.2	24	83	6	63	33	5	5	54	1.47
55065044--55065078	18	1.9	18	88	0	52	40	8	0	51	1.33
55066492--55066679	95	2.0	95	88	0	277	50	13	10	25	1.74
55066496--55066700	95	2.1	95	83	0	257	49	15	9	25	1.75
55071892--55071930	19	2.0	19	90	5	60	53	0	2	43	1.14
55075914--55075964	4	12.8	4	85	8	68	27	1	25	45	1.64
55075918--55075984	16	4.2	16	78	0	62	26	1	31	40	1.65
55080792--55081167	174	2.2	171	83	7	474	32	8	17	41	1.79
55081134--55081236	52	2.0	52	84	0	134	41	7	11	38	1.70
55086832--55086877	6	7.7	6	100	0	92	32	0	17	50	1.47
55090608--55090647	6	6.7	6	100	0	80	17	17	47	17	1.83
55091063--55091236	89	2.0	89	87	0	249	50	11	12	25	1.73
55092630--55092667	20	1.9	20	89	10	60	68	0	0	31	0.90
55092682--55092735	22	2.5	21	85	5	72	53	1	3	40	1.29
55095354--55095393	14	2.9	14	88	0	53	45	2	7	45	1.45
55100746--55100782	19	2.0	18	89	5	56	35	0	8	56	1.29
55100735--55100799	31	2.1	31	83	11	80	38	1	4	55	1.30
55100744--55100797	18	2.9	19	83	10	67	37	1	5	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55101147--55101287	64	2.2	64	96	0	255	43	24	6	24	1.77
55102781--55102817	19	1.9	19	94	0	65	43	2	0	54	1.14
55103294--55103353	31	1.9	31	86	0	84	28	6	11	53	1.62
55104536--55104608	29	2.5	30	80	8	78	45	1	4	49	1.29
55110652--55110773	47	2.7	46	85	3	183	31	9	9	50	1.65
55112506--55112600	34	2.8	34	92	4	156	11	13	15	58	1.62
55112968--55112996	14	2.0	15	93	6	51	27	0	17	55	1.42
55114969--55115589	314	2.0	316	88	4	932	35	19	15	29	1.92
55132974--55133031	31	1.9	31	86	6	84	50	10	0	39	1.37
55136093--55136123	5	6.2	5	100	0	62	0	19	0	80	0.71
55139907--55139944	17	2.2	17	100	0	76	50	15	5	28	1.66
55147126--55147187	22	2.8	23	73	4	65	19	6	8	66	1.40
55149060--55149209	82	1.8	82	90	4	232	38	19	8	33	1.82
55153221--55153267	18	2.6	19	83	9	64	61	6	0	31	1.21
55153221--55153267	19	2.7	18	84	12	62	61	6	0	31	1.21
55156454--55156577	59	2.1	61	83	8	157	34	4	6	54	1.45
55156955--55157000	20	2.3	20	100	0	92	67	0	0	32	0.91
55163710--55164082	186	2.0	186	87	0	530	35	24	11	28	1.90
55170107--55170144	12	3.1	13	81	14	53	26	28	0	44	1.54
55172854--55172880	9	3.0	9	100	0	54	33	11	11	44	1.75
55182376--55182436	32	1.9	32	83	3	79	32	1	3	62	1.21
55183526--55183595	27	2.6	27	81	4	88	48	15	10	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55203196--55203344	74	2.0	74	98	0	289	40	4	10	43	1.60
55203703--55203794	46	2.0	46	100	0	184	28	21	8	41	1.83
55204631--55204675	23	1.9	24	82	13	58	44	6	8	40	1.62
55211158--55211198	16	2.4	17	88	8	57	46	2	0	51	1.14
55217425--55217474	21	2.5	19	75	9	55	34	0	4	62	1.14
55218838--55218950	55	2.1	54	85	9	153	46	16	2	34	1.62
55220666--55221085	166	2.5	169	89	3	632	40	18	15	24	1.90
55244000--55244690	192	3.6	190	82	4	809	30	16	19	32	1.95
55247798--55247909	55	2.0	55	89	0	170	44	10	13	31	1.78
55251322--55251566	121	2.0	121	96	1	447	40	2	12	44	1.57
55251807--55251855	22	2.2	23	85	3	64	53	2	4	40	1.32
55251829--55251990	84	1.9	83	82	5	200	46	0	5	46	1.30
55252775--55252843	31	2.2	31	87	5	95	40	7	13	39	1.72
55259877--55259947	9	8.6	9	66	27	50	53	0	0	46	1.00
55259869--55259925	20	3.0	20	74	23	59	50	0	1	47	1.11
55259878--55259947	28	2.4	29	93	6	117	54	0	0	45	0.99
55273004--55273195	31	6.3	31	72	8	135	45	6	9	38	1.63
55278700--55279015	158	2.0	158	83	3	404	31	21	21	25	1.98
55282456--55282487	4	7.8	4	96	3	55	71	0	0	28	0.86
55284472--55284529	28	2.1	28	96	0	107	31	12	5	51	1.61
55289783--55289832	21	2.4	21	80	9	57	62	6	4	28	1.37
55293981--55294018	18	2.1	19	85	5	51	34	2	0	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55298400--55298460	31	1.9	32	86	3	88	31	1	19	47	1.59
55298705--55298781	29	2.6	29	76	15	77	40	16	3	38	1.67
55299109--55299178	4	18.0	4	82	5	81	24	4	28	42	1.73
55299115--55299193	22	3.5	22	89	3	113	22	5	30	41	1.75
55299110--55299193	12	7.3	12	78	10	86	23	4	29	41	1.75
55299669--55299752	32	2.7	32	79	15	95	34	16	3	45	1.65
55303405--55303443	2	19.5	2	100	0	78	48	0	0	51	1.00
55306268--55307336	222	4.8	222	87	2	1479	21	18	19	40	1.92
55308562--55308586	12	2.1	12	100	0	50	44	0	24	32	1.54
55308737--55308769	17	1.9	17	93	0	57	54	6	9	30	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182