genome.fa.s9.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  52  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17684945--17684972	14	2.0	14	100	0	56	57	0	7	35	1.26
17694664--17694698	18	2.0	18	94	5	63	40	0	0	60	0.97
17698582--17698629	18	2.7	18	78	9	53	58	2	2	37	1.22
17710180--17710219	19	2.1	19	100	0	80	55	25	0	20	1.44
17710341--17710403	24	2.6	24	82	0	81	47	11	14	26	1.77
17712263--17712315	24	2.2	24	86	0	70	56	9	9	24	1.60
17714085--17714110	2	13.0	2	100	0	52	50	0	50	0	1.00
17718202--17718235	12	2.9	11	87	12	50	88	2	8	0	0.62
17725152--17725180	8	3.8	8	95	4	51	10	89	0	0	0.48
17729245--17729269	13	1.9	13	100	0	50	60	0	0	40	0.97
17745354--17745394	7	5.9	7	100	0	82	56	29	0	14	1.39
17752212--17752288	21	3.8	19	69	21	50	58	1	2	37	1.20
17752450--17752493	19	2.3	19	88	0	61	34	2	0	63	1.07
17752450--17752493	9	4.7	9	85	5	52	34	2	0	63	1.07
17752518--17752577	10	6.3	9	78	19	52	31	3	0	65	1.09
17752518--17752577	27	2.1	27	84	9	75	31	3	0	65	1.09
17752656--17752683	8	3.5	8	100	0	56	14	0	0	85	0.59
17753151--17753212	19	3.3	19	80	14	74	62	3	0	33	1.11
17753152--17753226	19	4.1	18	78	14	57	60	4	0	36	1.16
17753198--17753249	17	2.9	18	77	5	52	51	1	0	46	1.12
17753227--17753266	20	2.0	20	90	5	62	47	0	2	50	1.14
17760998--17761065	31	2.2	31	89	0	100	32	13	10	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17763281--17763329	13	3.8	13	80	0	53	42	4	14	38	1.64
17764550--17764621	32	2.3	30	77	11	74	25	5	4	65	1.32
17767436--17767480	19	2.3	20	96	3	83	13	6	11	68	1.37
17767436--17767480	20	2.3	19	92	3	72	13	6	11	68	1.37
17767455--17767521	30	2.2	31	84	7	84	10	5	16	67	1.40
17767485--17767528	19	2.3	19	84	4	52	6	4	18	70	1.27
17767513--17767591	12	6.8	12	68	8	56	6	3	21	68	1.28
17774389--17774584	97	2.0	97	88	3	290	25	9	24	40	1.85
17779274--17779392	41	2.9	41	78	1	132	36	18	23	21	1.95
17781020--17781059	20	2.0	20	100	0	80	35	5	25	35	1.78
17781024--17781067	20	2.2	20	83	0	52	38	9	18	34	1.82
17783128--17783267	43	3.3	42	78	3	147	25	15	26	32	1.95
17785045--17785078	16	2.1	17	88	5	52	32	0	0	67	0.91
17789312--17789386	18	4.3	18	72	14	59	66	2	2	28	1.18
17789344--17789374	9	3.4	9	95	0	53	64	0	0	35	0.94
17790950--17791217	84	3.2	82	81	5	306	29	15	21	33	1.94
17791600--17791807	56	3.7	56	88	3	285	36	7	13	42	1.72
17793972--17794017	24	1.9	24	100	0	92	47	21	13	17	1.81
17797474--17797570	43	2.3	43	94	0	167	45	11	11	31	1.76
17798953--17798996	5	8.8	5	100	0	88	61	0	0	38	0.96
17799045--17799084	12	3.4	12	82	3	55	70	5	0	25	1.08
17799046--17799100	25	2.3	23	87	9	74	72	7	0	20	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17799355--17799397	14	3.1	14	84	15	63	0	27	0	72	0.85
17799616--17799656	12	3.4	12	86	6	57	14	9	14	60	1.57
17801893--17801931	16	2.5	16	80	19	55	38	0	0	61	0.96
17803324--17803372	18	2.7	19	81	15	59	59	0	2	38	1.09
17808892--17808929	19	2.0	19	89	0	58	57	0	0	42	0.98
17809131--17809186	24	2.4	23	79	5	67	71	1	12	14	1.23
17809143--17809192	24	2.1	24	85	7	66	72	2	16	10	1.21
17809979--17810083	29	3.6	29	75	11	99	32	24	3	39	1.73
17809979--17810350	59	6.3	59	85	4	434	33	28	3	34	1.74
17809979--17810350	120	3.2	115	84	5	430	33	28	3	34	1.74
17809979--17810327	179	2.0	176	86	5	488	33	28	3	34	1.74
17814229--17814288	31	1.9	31	86	6	86	33	18	10	38	1.84
17815619--17815649	14	2.2	14	94	0	53	48	0	0	51	1.00
17821928--17822009	41	2.0	43	95	4	150	17	13	21	47	1.81
17822413--17822443	16	1.9	16	93	0	53	48	12	6	32	1.67
17823602--17823728	50	2.5	50	83	3	157	21	18	26	33	1.96
17823613--17823753	25	5.6	25	84	5	140	21	19	27	31	1.97
17823639--17823770	26	5.2	26	84	2	128	21	17	27	33	1.96
17824252--17824650	43	9.3	43	83	2	489	29	27	18	24	1.98
17824259--17824650	171	2.3	172	86	3	540	29	27	18	25	1.98
17824902--17825039	66	2.1	65	85	5	179	14	26	16	42	1.87
17829770--17829822	21	2.5	19	75	19	52	58	1	11	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17831410--17831741	41	8.1	41	85	2	382	23	21	25	30	1.99
17831881--17831937	28	2.0	28	96	0	105	28	10	22	38	1.87
17833482--17833528	25	1.9	25	91	4	78	23	8	8	59	1.54
17835011--17835059	21	2.3	21	89	0	71	14	40	4	40	1.64
17836026--17836075	23	2.2	22	92	3	82	46	26	0	28	1.53
17836624--17836692	14	4.8	14	74	13	68	53	15	1	28	1.51
17836607--17836821	44	4.9	44	80	12	219	54	17	1	25	1.53
17836618--17836807	23	8.5	22	73	24	157	55	17	1	25	1.51
17836594--17836807	23	9.4	23	69	27	106	56	18	1	23	1.52
17836619--17836805	99	1.9	96	85	5	259	55	18	1	25	1.52
17836669--17836816	32	4.5	32	74	14	122	54	18	1	26	1.52
17836707--17836826	18	6.8	18	72	17	92	55	19	1	24	1.52
17836931--17836994	30	2.1	30	91	0	101	64	1	7	26	1.30
17838051--17838112	20	3.1	20	75	11	56	38	0	3	58	1.15
17841633--17841683	21	2.4	21	83	9	59	41	0	0	58	0.98
17841638--17841688	12	4.2	12	80	7	50	45	0	0	54	0.99
17842660--17842707	22	2.1	22	88	3	69	72	4	8	14	1.23
17843522--17843564	19	2.3	19	84	8	52	58	4	0	37	1.19
17844134--17844346	104	2.1	104	82	7	263	25	26	13	34	1.93
17845014--17845067	4	13.8	4	75	24	53	77	0	3	18	0.91
17845012--17845072	13	4.6	13	75	17	63	78	0	3	18	0.88
17849112--17849161	21	2.4	21	86	0	64	26	12	16	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17850700--17850747	22	2.1	22	88	3	69	72	4	8	14	1.23
17851559--17851601	19	2.3	19	84	8	52	58	4	0	37	1.19
17854919--17854979	32	1.9	32	100	0	122	36	11	21	31	1.89
17860536--17860605	24	3.0	24	68	18	67	48	2	7	41	1.45
17870776--17870862	28	3.2	28	79	9	74	35	0	10	54	1.35
17870811--17870862	26	2.0	26	84	0	68	32	0	7	59	1.26
17871076--17871122	15	3.1	15	81	0	58	23	0	25	51	1.49
17872324--17872625	41	7.3	41	81	7	290	25	25	25	23	2.00
17872263--17872625	82	4.4	82	79	6	335	26	24	25	22	2.00
17874959--17875670	49	14.2	49	76	13	585	46	2	5	45	1.38
17874980--17875692	18	41.3	18	63	19	143	46	2	5	46	1.37
17875024--17875564	161	3.5	160	82	8	743	46	2	5	45	1.39
17875234--17875353	8	14.8	8	69	18	52	47	0	3	48	1.24
17874949--17875652	307	2.3	307	95	1	1275	46	2	5	45	1.39
17875592--17875674	40	2.1	40	93	0	139	46	0	4	48	1.23
17875271--17875666	210	1.9	209	83	3	510	46	2	5	45	1.40
17875593--17875686	40	2.5	38	87	6	129	45	0	4	50	1.21
17875594--17875707	36	3.1	36	78	14	108	46	1	3	48	1.29
17875721--17875814	8	11.8	8	71	22	65	43	1	3	52	1.24
17875744--17875814	30	2.4	30	88	9	101	43	0	2	53	1.15
17881332--17881488	66	2.4	66	86	2	226	44	15	24	15	1.85
17881475--17881515	21	2.0	21	90	0	64	31	24	41	2	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17881475--17881526	21	2.5	21	84	6	61	34	21	42	1	1.64
17881812--17882122	43	7.2	43	90	0	451	27	24	29	18	1.98
17883583--17883620	3	12.7	3	100	0	76	34	0	0	65	0.93
17884007--17884046	21	1.9	21	94	0	71	57	12	0	30	1.36
17884095--17884137	12	3.5	12	80	3	50	76	6	0	16	0.99
17884160--17884249	24	3.9	24	76	8	114	47	13	0	38	1.43
17884170--17884259	45	2.0	45	100	0	180	42	13	0	44	1.43
17887340--17887379	20	1.9	22	85	10	57	35	7	2	55	1.42
17889404--17889441	19	2.0	19	100	0	76	36	10	21	31	1.87
17891116--17891218	6	17.3	6	81	13	124	45	2	0	51	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182