genome.fa.s9.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  95  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30974225--30974484	122	2.1	126	89	4	395	37	12	7	41	1.72
30981080--30981320	123	1.9	126	87	5	357	38	11	9	40	1.74
30987392--30987448	16	3.6	16	73	0	51	66	3	1	28	1.18
30989201--30989226	8	3.2	8	100	0	52	61	0	11	26	1.30
30989532--30989588	16	3.6	16	73	0	51	66	3	1	28	1.18
30989569--30989626	26	2.2	25	77	14	64	65	5	0	29	1.14
31000919--31000969	25	2.0	25	100	0	102	41	15	11	31	1.83
31004235--31004277	21	2.0	21	83	16	54	37	6	25	30	1.82
31009580--31009763	95	1.9	95	95	0	332	32	17	14	36	1.89
31025688--31025730	14	3.3	14	84	9	56	69	4	9	16	1.31
31029281--31029331	21	2.4	21	83	0	75	33	19	17	29	1.95
31033152--31033189	12	3.1	12	88	7	58	28	31	15	23	1.96
31034577--31034619	21	1.9	24	86	13	65	46	2	11	39	1.53
31035703--31035731	11	2.5	12	94	5	51	75	0	0	24	0.80
31037199--31037306	6	18.0	6	75	14	89	49	0	1	48	1.18
31037203--31037267	17	4.1	15	81	15	78	43	0	3	53	1.16
31037207--31037270	31	2.1	31	91	5	103	43	0	3	53	1.16
31037189--31037269	11	7.5	11	72	19	64	41	0	3	54	1.18
31037199--31037306	42	2.6	41	80	7	110	49	0	1	48	1.18
31037384--31037422	12	2.9	14	81	14	55	38	28	17	15	1.91
31039183--31039380	30	6.6	30	87	1	247	36	23	3	36	1.72
31039181--31039368	90	2.1	89	89	1	295	37	21	3	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31039357--31039853	59	8.5	56	84	6	544	30	27	5	35	1.81
31039357--31039853	118	4.2	115	85	5	679	30	27	5	35	1.81
31039360--31039796	30	14.8	30	65	9	173	31	28	5	34	1.81
31039360--31039853	177	2.8	177	90	0	792	31	27	5	35	1.81
31047577--31047706	23	5.4	25	81	14	134	37	20	30	11	1.88
31047577--31047706	48	2.8	45	80	12	138	37	20	30	11	1.88
31054058--31054145	25	3.5	25	90	3	133	42	19	26	12	1.86
31054058--31054165	25	4.4	25	86	6	116	42	18	26	12	1.85
31061540--31061833	52	5.7	52	91	1	437	29	13	21	35	1.92
31061540--31061833	105	2.8	103	90	3	446	29	13	21	35	1.92
31063078--31063208	69	1.9	69	91	0	217	25	17	21	35	1.95
31066935--31067177	52	4.7	52	88	0	360	28	13	23	34	1.92
31072067--31072547	239	2.0	238	97	0	908	38	21	24	16	1.93
31073221--31073261	12	3.7	11	84	12	57	78	2	17	2	0.98
31089751--31090099	180	1.9	181	85	5	483	23	20	25	30	1.99
31089960--31090113	80	1.9	80	89	0	236	24	20	25	29	1.99
31092478--31092604	56	2.3	56	88	0	191	25	25	25	23	2.00
31093042--31093267	39	5.8	39	78	2	184	38	20	17	23	1.93
31095127--31095165	16	2.3	16	86	8	51	30	15	20	33	1.94
31099106--31099144	16	2.3	17	91	8	62	33	5	20	41	1.74
31100856--31101064	39	5.4	39	79	2	199	36	20	18	24	1.95
31100856--31101064	78	2.7	75	80	5	220	36	20	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31106529--31106625	46	2.1	46	96	0	176	36	14	3	46	1.60
31114000--31114142	56	2.6	56	84	4	180	26	25	27	20	1.99
31114558--31114784	39	5.9	38	76	6	206	37	21	17	23	1.94
31114557--31114784	116	2.0	116	83	1	287	37	21	17	24	1.94
31121438--31121499	28	2.2	28	88	0	88	32	24	11	32	1.90
31123556--31123611	28	2.0	28	82	0	67	41	19	0	39	1.52
31123767--31123877	57	1.9	59	82	10	140	29	18	6	45	1.74
31138923--31138965	19	2.3	19	84	4	52	48	6	0	44	1.29
31139451--31139501	21	2.3	23	83	6	61	50	0	21	27	1.48
31140068--31140096	15	1.9	15	100	0	58	51	6	20	20	1.70
31144011--31144335	172	1.9	172	100	0	650	30	27	12	29	1.93
31146909--31146989	38	2.1	38	86	8	112	44	1	3	50	1.27
31150576--31150916	146	2.3	146	82	2	398	23	22	21	32	1.98
31161408--31161477	27	2.4	28	79	9	70	31	5	8	54	1.54
31165436--31165482	18	2.6	18	82	0	58	40	2	2	55	1.24
31170268--31170425	56	2.8	56	88	0	226	24	16	27	31	1.96
31181806--31181851	18	2.6	18	82	6	58	23	17	17	41	1.90
31184746--31184915	48	3.6	48	92	0	270	24	7	14	53	1.67
31185333--31185490	79	2.0	78	87	1	226	37	17	16	27	1.91
31194929--31194962	17	1.9	17	94	5	59	20	11	5	61	1.50
31203648--31203693	22	2.1	21	88	4	65	15	6	2	76	1.09
31209899--31209983	25	3.4	25	77	3	82	42	21	15	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31222750--31222844	17	5.6	17	68	24	67	40	1	3	55	1.23
31222819--31222930	58	1.9	58	87	3	163	43	2	2	50	1.30
31222856--31222929	38	1.9	38	86	5	105	45	2	1	50	1.24
31225562--31225596	18	1.9	18	88	0	52	51	5	34	8	1.56
31231579--31231621	21	2.0	21	82	8	52	4	34	2	58	1.32
31233802--31233827	13	2.0	13	100	0	52	46	15	0	38	1.46
31254161--31254199	21	1.9	21	89	5	62	64	7	15	12	1.49
31261687--31261725	18	2.1	19	85	9	53	41	0	15	43	1.46
31265937--31265999	19	3.4	18	72	16	58	41	0	3	55	1.16
31265937--31266000	25	2.5	24	80	14	67	42	0	3	54	1.16
31265955--31266042	29	3.1	29	70	15	67	39	2	5	52	1.38
31268069--31268103	18	1.9	18	88	0	52	45	25	0	28	1.54
31271074--31271163	37	2.4	37	83	0	108	27	27	21	23	1.99
31271141--31271238	38	2.6	37	80	7	117	28	25	15	30	1.96
31271228--31271281	26	2.1	26	89	0	81	25	20	24	29	1.99
31284911--31285172	39	6.8	39	83	5	266	22	15	19	42	1.88
31285101--31285164	21	3.2	21	64	28	57	18	17	23	40	1.91
31285252--31285438	72	2.6	72	89	3	286	29	26	14	29	1.95
31292405--31292437	17	1.9	17	93	0	57	18	18	12	51	1.76
31296497--31296572	26	2.9	26	74	3	73	42	17	10	30	1.82
31296664--31296703	16	2.5	16	91	0	71	35	25	2	37	1.69
31300316--31300587	52	5.2	52	90	1	402	29	13	22	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31303387--31303437	18	2.8	19	85	8	70	0	33	0	66	0.92
31303395--31303437	15	2.8	15	89	3	59	0	32	0	67	0.91
31309401--31309641	52	4.6	52	90	0	365	27	14	22	35	1.93
31318859--31319766	458	2.0	462	81	8	1087	35	17	18	28	1.93
31322372--31322428	17	3.4	16	76	9	51	45	10	21	22	1.82
31322663--31322696	14	2.4	14	95	0	59	70	5	0	23	1.09
31323752--31323842	7	13.1	7	81	2	103	31	25	24	18	1.97
31329486--31329513	14	2.0	14	100	0	56	71	7	0	21	1.09
31329489--31329522	17	2.0	17	94	0	59	70	2	0	26	1.01
31330609--31330660	22	2.4	22	86	0	68	23	23	30	23	1.99
31340487--31340686	39	5.1	39	92	1	319	22	12	23	42	1.87
31344248--31344328	20	3.8	20	78	12	90	45	3	0	50	1.19
31344270--31344346	20	3.3	24	75	17	90	51	5	0	42	1.24
31344253--31344346	44	2.1	46	94	4	165	48	5	0	45	1.25
31344265--31344360	44	2.2	42	85	10	122	51	6	1	41	1.34
31344219--31344346	44	2.6	48	83	15	156	49	6	0	44	1.27
31355787--31355846	28	2.1	28	87	6	86	26	11	30	31	1.92
31355833--31356085	59	4.3	59	89	3	375	35	3	28	32	1.74
31355833--31356053	30	7.4	29	66	25	106	35	3	27	33	1.74
31355828--31356082	29	8.7	28	68	25	111	35	3	28	32	1.76
31356156--31356487	161	2.1	161	86	3	463	44	13	17	24	1.85
31358037--31358063	14	1.9	14	100	0	54	51	0	11	37	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31358352--31359080	92	7.9	92	93	0	1113	27	17	19	36	1.94
31358676--31358831	52	3.2	52	65	26	151	27	15	17	39	1.90
31358358--31359080	367	2.0	367	91	2	1175	27	17	19	35	1.94
31371198--31371256	27	2.1	27	87	9	84	25	10	30	33	1.89
31371283--31371494	29	7.2	28	65	22	80	32	2	28	36	1.70
31371238--31371493	58	4.4	59	86	3	349	33	3	29	33	1.75
31371238--31371493	117	2.2	117	90	4	392	33	3	29	33	1.75
31371332--31371490	28	5.5	29	70	18	125	32	2	29	35	1.71
31371605--31371897	162	1.8	162	87	1	444	44	13	17	24	1.85
31372723--31372764	22	1.9	22	85	0	57	28	0	7	64	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182