genome.fa.s9.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  158  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48412823--48413469	332	1.9	333	97	0	1217	25	15	23	35	1.94
48419672--48419700	8	3.6	8	100	0	58	27	24	10	37	1.88
48420114--48420157	20	2.2	20	87	0	61	34	20	31	13	1.92
48420130--48420209	20	4.0	19	72	15	63	37	16	30	16	1.90
48420133--48420314	40	4.5	40	78	8	172	40	17	27	15	1.89
48420135--48420299	80	2.0	81	85	1	224	40	18	26	15	1.89
48420239--48420291	21	2.5	22	74	20	60	45	18	22	13	1.84
48425213--48425260	19	2.6	18	73	3	51	45	2	0	52	1.12
48438467--48438506	21	2.0	20	90	9	64	40	32	2	25	1.69
48442438--48442485	23	2.1	23	92	0	78	41	14	14	29	1.85
48449386--48449436	2	25.0	2	92	4	84	50	1	0	47	1.12
48453363--48453397	16	2.1	16	89	10	52	68	0	5	25	1.11
48455897--48457404	213	7.1	213	88	2	2219	32	21	18	28	1.96
48464949--48465165	121	1.8	119	87	4	328	35	14	12	37	1.84
48466386--48466436	26	2.0	25	85	11	68	33	0	0	66	0.92
48466557--48466602	19	2.4	19	85	10	58	26	0	6	67	1.15
48466529--48466613	28	3.0	29	79	19	90	28	2	4	64	1.26
48466529--48466602	29	2.6	28	79	14	80	25	1	5	67	1.20
48466593--48466618	13	2.0	13	100	0	52	38	7	0	53	1.30
48466530--48466613	29	2.9	29	73	18	77	28	2	4	64	1.26
48472699--48472829	55	2.4	53	75	13	122	48	15	6	30	1.69
48476689--48476715	13	2.1	13	100	0	54	37	0	25	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476730--48476833	41	2.5	41	84	9	124	27	1	4	65	1.23
48476749--48476823	10	7.3	10	72	10	53	25	2	1	70	1.08
48476758--48476824	21	3.3	20	78	15	75	25	1	1	71	1.03
48476959--48477219	90	3.0	86	80	10	282	34	11	18	35	1.86
48476959--48477219	89	3.0	87	78	11	284	34	11	18	35	1.86
48478401--48478607	103	2.0	103	82	1	254	23	22	29	24	1.99
48485852--48485877	3	8.7	3	100	0	52	34	30	34	0	1.58
48485984--48486183	105	1.9	103	91	2	328	30	17	21	31	1.96
48486642--48486730	31	3.0	30	78	4	99	40	16	11	31	1.84
48490688--48490735	24	2.0	23	88	4	69	70	2	0	27	0.98
48494586--48494663	6	12.8	6	72	12	61	42	1	5	51	1.32
48494585--48494654	18	3.8	18	78	9	70	41	1	5	51	1.34
48495441--48495468	3	9.3	3	100	0	56	64	0	0	35	0.94
48495462--48495507	13	3.6	13	85	8	60	47	0	8	43	1.34
48496610--48496883	28	9.4	29	76	14	149	37	26	3	32	1.73
48496606--48496943	30	11.6	27	77	12	205	37	26	3	33	1.73
48496668--48496956	60	4.9	60	80	10	230	37	25	2	34	1.69
48496971--48497044	28	2.6	28	95	0	139	36	27	6	29	1.82
48498490--48498552	24	2.6	24	84	0	72	30	12	23	33	1.92
48499623--48499661	16	2.4	17	87	12	64	25	2	0	71	0.98
48499623--48499674	8	6.1	8	78	17	52	28	1	0	69	0.99
48501363--48502815	213	6.8	213	87	3	1917	33	21	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48501363--48502815	639	2.3	639	88	2	2159	33	21	16	28	1.95
48504859--48504904	23	2.0	23	82	0	56	36	19	10	32	1.87
48511346--48511404	29	2.0	29	83	3	73	45	11	10	32	1.74
48511478--48511547	22	3.3	21	71	13	56	40	2	4	52	1.36
48514200--48514269	29	2.3	31	85	4	90	24	12	14	48	1.78
48514404--48514446	18	2.4	18	88	7	61	46	0	0	53	1.00
48516481--48516571	29	3.1	28	74	14	78	38	2	0	59	1.10
48521162--48521195	15	2.3	15	89	0	50	14	5	11	67	1.39
48527057--48527417	190	1.9	189	98	0	704	39	12	19	28	1.88
48528243--48528280	19	2.0	19	100	0	76	42	10	5	42	1.62
48529403--48529446	22	2.0	22	90	0	70	45	4	22	27	1.72
48540697--48540731	3	11.7	3	100	0	70	0	34	0	65	0.93
48553128--48553191	18	3.4	18	68	19	58	53	7	4	34	1.51
48553126--48553205	39	2.1	39	97	0	151	47	11	6	35	1.64
48553610--48553648	18	2.2	18	100	0	78	23	15	5	56	1.59
48583985--48584031	20	2.3	20	85	0	58	38	10	6	44	1.65
48593129--48593179	15	3.8	13	80	12	50	31	0	0	68	0.90
48593129--48593175	14	3.3	15	82	8	53	29	0	0	70	0.88
48608103--48608141	18	2.2	18	90	0	60	43	0	2	53	1.14
48608102--48608173	25	2.7	26	72	12	67	43	0	1	55	1.08
48609606--48610132	266	2.0	266	91	1	860	28	13	8	49	1.71
48617000--48617163	81	2.0	82	87	1	240	37	3	14	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48634966--48635030	33	2.1	30	82	8	76	46	26	4	23	1.71
48635226--48635262	17	2.1	18	95	5	67	54	10	5	29	1.57
48636810--48636960	81	1.9	80	92	1	257	45	9	2	41	1.51
48637722--48637781	31	1.9	31	86	6	86	31	15	6	46	1.71
48638000--48638102	29	3.5	29	75	17	104	47	8	16	27	1.76
48638000--48638111	60	1.9	59	87	7	165	49	8	16	26	1.73
48645282--48645309	13	2.2	13	100	0	56	35	0	0	64	0.94
48646274--48646399	56	2.2	56	88	2	191	46	10	17	26	1.80
48646274--48646529	28	9.1	28	74	10	157	41	9	19	29	1.83
48646414--48646529	29	4.1	29	86	4	148	37	7	19	34	1.81
48646417--48646541	56	2.2	58	86	2	173	36	7	21	34	1.81
48647131--48647159	12	2.3	13	94	5	51	27	0	31	41	1.56
48648778--48648834	30	1.9	30	89	3	89	28	12	0	59	1.33
48648868--48648937	6	11.8	6	77	21	60	31	1	0	67	1.00
48648873--48648935	17	3.7	17	80	18	69	30	1	0	68	0.99
48648878--48648951	34	2.2	34	81	11	82	28	4	1	66	1.18
48649370--48649395	13	2.0	13	100	0	52	53	7	7	30	1.57
48653287--48653332	11	4.1	11	77	5	56	54	21	8	15	1.68
48655477--48655536	22	2.8	22	92	5	97	56	3	20	20	1.56
48657971--48658029	29	1.9	29	86	10	82	44	25	6	23	1.78
48659867--48660017	80	1.9	80	94	0	266	45	8	2	43	1.48
48660690--48660717	7	4.0	7	100	0	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48660808--48660887	31	2.6	30	82	7	97	27	13	8	50	1.71
48660837--48660949	59	1.9	59	83	3	147	26	16	7	48	1.74
48661558--48661868	168	1.8	172	89	4	495	23	19	10	46	1.80
48662947--48663039	48	1.9	49	95	4	172	38	32	5	23	1.78
48667679--48667771	48	1.9	48	86	4	134	38	31	5	24	1.78
48669724--48669754	16	1.9	16	93	0	53	48	0	22	29	1.51
48671036--48671091	24	2.3	24	84	0	76	23	10	16	50	1.76
48672816--48672861	24	1.9	24	95	0	83	26	13	19	41	1.88
48672846--48672891	23	2.0	23	83	8	58	39	10	17	32	1.84
48673073--48673183	55	2.0	55	92	0	186	44	19	7	28	1.77
48676282--48676319	20	1.9	20	88	0	58	31	13	15	39	1.86
48676411--48676498	31	2.9	31	75	14	85	62	1	3	32	1.19
48676489--48676528	19	2.1	19	86	9	55	62	7	0	30	1.23
48687408--48687615	23	9.2	23	71	16	139	41	21	24	12	1.87
48687367--48687614	110	2.3	110	94	0	442	42	20	24	12	1.86
48692583--48692646	18	3.4	18	68	19	58	53	6	4	35	1.47
48692581--48692659	39	2.0	39	100	0	158	48	10	5	36	1.59
48707757--48708095	60	5.7	60	79	10	329	29	15	13	41	1.84
48707764--48708095	121	2.8	119	84	6	395	29	14	13	42	1.84
48711291--48711361	22	3.3	21	73	23	67	47	5	0	46	1.26
48711327--48711360	17	1.9	18	88	5	52	50	2	0	47	1.16
48714603--48714634	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48717985--48718009	6	4.2	6	100	0	50	16	0	0	84	0.63
48718407--48718575	43	3.9	43	85	2	178	27	20	24	27	1.99
48719237--48719292	28	2.1	27	83	6	69	25	16	10	48	1.78
48720297--48720338	21	2.0	22	86	9	61	30	0	4	64	1.14
48721341--48721376	17	2.1	18	89	5	56	27	0	25	47	1.52
48721334--48721399	28	2.4	28	79	5	71	21	1	25	51	1.56
48726699--48726724	12	2.2	12	100	0	52	30	0	0	69	0.89
48728186--48728284	31	3.3	30	71	13	87	23	16	13	47	1.81
48728186--48728340	59	2.6	60	87	3	215	23	18	12	45	1.83
48728244--48728340	31	3.2	30	74	11	99	23	19	13	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182