genome.fa.s9.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  164  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49872444--49872993	68	7.9	68	88	4	814	34	16	19	28	1.94
49872438--49873050	68	8.7	74	85	6	542	34	16	19	29	1.94
49873329--49873383	27	2.0	27	89	0	83	40	0	5	54	1.23
49873347--49873445	6	16.8	6	73	15	73	47	2	1	49	1.19
49873347--49873418	17	4.5	17	84	11	89	40	1	1	56	1.16
49873337--49873414	11	7.9	10	71	25	51	39	1	2	56	1.21
49873349--49873426	37	2.1	37	76	6	88	46	1	1	51	1.17
49874151--49874193	15	2.8	15	78	3	50	58	2	4	34	1.32
49875171--49875584	30	13.8	30	86	1	517	36	23	3	36	1.72
49875557--49875752	59	3.4	57	72	4	176	28	30	4	36	1.77
49883463--49883506	19	2.4	18	80	3	52	56	2	4	36	1.32
49891083--49891134	18	3.1	17	77	5	52	34	0	1	63	1.06
49893354--49893414	27	2.4	23	80	20	68	57	0	3	39	1.15
49893357--49893414	29	2.2	27	79	14	68	60	0	3	36	1.14
49895589--49895626	11	3.5	11	82	10	51	39	0	0	60	0.97
49902117--49902156	11	3.6	11	86	0	62	67	25	0	7	1.16
49905602--49905675	34	2.2	34	78	4	78	32	8	13	45	1.73
49908513--49908609	51	1.9	51	95	0	176	36	14	14	35	1.87
49911645--49911690	22	2.1	22	88	8	67	50	2	0	47	1.13
49918794--49919090	59	5.1	58	89	5	420	34	4	29	31	1.76
49918824--49918975	28	5.3	27	67	25	71	36	4	28	30	1.77
49918785--49919083	117	2.5	117	91	3	485	33	4	30	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919000--49919090	28	3.1	28	69	25	80	36	3	29	30	1.74
49921010--49921087	6	13.0	6	69	15	54	53	1	2	42	1.22
49920994--49921053	17	3.7	15	80	10	57	46	3	3	46	1.35
49921010--49921087	17	4.3	18	80	12	72	53	1	2	42	1.22
49921682--49922296	174	3.5	176	83	4	705	27	21	21	28	1.99
49926640--49926697	29	2.0	29	86	0	80	36	13	6	43	1.71
49942828--49943214	195	2.0	195	96	1	722	30	25	10	33	1.90
49955030--49955517	165	2.9	165	83	4	547	28	15	7	48	1.73
49955030--49955517	83	5.9	82	79	5	484	28	15	7	48	1.73
49955030--49955501	248	1.9	248	82	5	587	28	14	8	48	1.73
49956484--49956522	19	2.0	20	85	14	55	46	0	0	53	1.00
49957505--49957570	30	2.2	29	83	5	78	48	6	0	45	1.27
49958014--49958065	26	2.0	26	85	7	70	34	3	5	55	1.42
49960126--49960182	21	3.0	20	80	15	75	7	5	14	73	1.21
49960121--49960180	17	3.3	17	76	17	66	6	5	13	75	1.18
49960124--49960190	21	3.4	20	72	16	68	5	5	14	73	1.23
49960115--49960201	38	2.3	38	82	9	113	4	4	16	74	1.15
49960176--49960271	24	4.2	23	82	5	106	4	4	19	71	1.19
49960186--49960256	36	2.0	36	94	0	124	4	2	19	73	1.13
49960186--49960256	12	5.9	12	88	0	106	4	2	19	73	1.13
49960196--49960269	21	3.4	22	80	10	89	5	4	18	71	1.21
49960186--49960282	24	4.2	24	81	7	110	5	4	18	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49961109--49961155	23	2.1	23	84	4	60	38	0	2	59	1.09
49962174--49962203	2	15.0	2	100	0	60	50	0	50	0	1.00
49968579--49968644	32	2.1	32	97	0	123	59	4	15	21	1.54
49968584--49968635	15	3.3	15	73	19	52	55	3	17	23	1.58
49972347--49972391	21	2.1	21	83	0	54	35	13	8	42	1.75
49972711--49972816	54	2.0	54	83	3	133	23	14	5	56	1.59
49976294--49976332	20	2.0	20	94	0	69	17	12	0	69	1.19
49991782--49991844	33	1.9	32	84	9	83	41	3	3	52	1.33
49991838--49991883	24	1.9	24	86	0	65	47	0	2	50	1.13
49991893--49991942	25	2.0	24	88	11	73	50	4	0	46	1.20
49995216--49995366	14	11.4	14	68	17	54	51	25	0	23	1.48
49995241--49995308	7	9.7	7	75	0	55	57	22	0	20	1.41
49995237--49995294	21	2.8	21	97	0	107	60	18	0	20	1.36
49995307--49995385	28	2.9	28	84	5	81	49	30	0	20	1.49
49995341--49995400	14	4.3	14	75	8	50	50	38	0	11	1.39
49995341--49995400	28	2.1	28	87	0	84	50	38	0	11	1.39
49995362--49995507	35	4.2	34	75	7	123	48	36	0	13	1.48
49995369--49995508	7	20.0	7	72	2	84	47	36	0	15	1.50
49997417--49997464	22	2.3	22	89	7	73	50	6	2	41	1.39
49998814--49998917	55	1.9	55	89	0	163	26	10	14	48	1.76
50001100--50001165	11	6.0	11	80	7	71	45	0	1	53	1.09
50001099--50001165	6	12.0	6	77	15	72	44	0	1	53	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50001098--50001165	17	4.0	18	77	11	65	44	0	1	54	1.09
50001099--50001165	22	3.0	23	78	6	84	44	0	1	53	1.09
50002860--50002926	29	2.3	29	86	0	89	41	20	7	29	1.80
50002919--50003069	29	5.1	29	68	23	100	33	28	3	33	1.76
50002919--50003350	59	7.3	60	84	5	549	33	29	3	33	1.75
50002929--50003085	30	5.3	29	68	24	96	31	29	3	36	1.73
50002919--50003342	178	2.4	176	86	4	584	34	29	3	33	1.75
50002948--50003344	30	13.4	29	64	22	114	34	28	3	32	1.74
50010452--50010491	14	2.9	14	85	10	55	52	0	2	45	1.14
50012989--50013148	23	6.9	23	79	6	137	42	21	23	11	1.86
50023695--50023720	3	8.7	3	100	0	52	65	0	0	34	0.93
50024050--50024098	23	2.1	23	81	7	55	57	0	2	40	1.10
50025012--50025044	15	2.2	15	100	0	66	15	27	18	39	1.90
50029388--50029438	24	2.1	24	88	0	75	56	9	9	23	1.61
50036451--50036528	31	2.5	31	85	0	102	52	10	11	25	1.69
50039522--50039641	61	2.0	60	81	6	143	44	0	16	38	1.54
50040356--50040407	21	2.5	21	81	6	61	40	5	17	36	1.73
50041351--50041391	9	4.6	9	90	0	55	34	36	0	29	1.58
50041341--50041385	3	15.0	3	90	0	72	33	37	0	28	1.58
50043478--50043511	18	1.9	17	88	5	50	47	0	0	52	1.00
50043483--50043513	16	2.0	16	93	6	55	51	0	0	48	1.00
50055238--50055364	59	2.2	59	100	0	254	40	10	34	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50059233--50059370	59	2.4	58	90	1	213	35	5	27	31	1.79
50059277--50059428	30	5.2	29	73	12	89	34	3	26	35	1.75
50059265--50059569	59	5.1	60	81	7	170	36	3	26	34	1.74
50059342--50059672	30	11.0	30	87	3	391	36	3	24	34	1.74
50059765--50060089	161	2.0	163	87	2	476	45	13	14	25	1.82
50061644--50061733	6	14.8	6	73	19	71	50	2	1	46	1.21
50061662--50061735	31	2.5	31	85	12	95	52	2	1	43	1.23
50061666--50061724	25	2.5	23	81	10	73	52	3	1	42	1.28
50061663--50061733	17	4.4	17	74	16	71	53	2	1	42	1.24
50081662--50081701	21	2.0	21	85	5	55	52	5	2	40	1.37
50096322--50096360	21	1.9	20	94	5	69	46	20	2	30	1.64
50101955--50101993	17	2.3	17	90	0	60	15	12	25	46	1.81
50105217--50105249	2	16.5	2	93	0	57	48	0	3	48	1.17
50113108--50113137	14	2.1	14	93	0	51	70	3	6	20	1.25
50120424--50120495	30	2.5	28	82	8	81	38	2	22	36	1.69
50120424--50120585	29	5.5	30	77	10	113	36	3	24	35	1.73
50120444--50120593	29	5.1	29	79	10	153	34	3	26	36	1.73
50120444--50120592	60	2.5	59	81	8	162	34	3	26	35	1.73
50122370--50122413	11	3.9	11	85	5	52	59	4	0	36	1.18
50122388--50122430	17	2.5	18	92	7	72	58	2	0	39	1.11
50122382--50122419	6	6.5	6	87	6	60	57	0	0	42	0.98
50122366--50122419	23	2.3	23	93	3	90	55	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50122395--50122448	28	1.9	28	84	0	72	59	7	0	33	1.25
50122840--50123279	206	2.2	204	93	1	738	21	23	20	35	1.96
50131209--50131253	22	2.2	20	92	8	72	15	24	8	51	1.72
50135680--50135772	28	3.2	28	69	11	80	36	10	22	30	1.88
50135632--50135771	58	2.4	59	82	5	169	37	9	23	29	1.86
50135753--50135899	58	2.5	57	86	5	197	32	5	27	34	1.80
50135753--50135895	29	4.9	29	77	7	139	33	4	25	35	1.78
50137696--50137750	11	4.8	11	82	8	65	58	3	0	38	1.16
50137691--50137764	24	3.2	24	74	12	73	54	8	0	37	1.30
50141677--50141722	24	1.9	23	86	8	65	56	6	4	32	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182