genome.fa.s9.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  148  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45550619--45550715	49	2.0	50	87	2	142	15	25	17	41	1.89
45552037--45552233	6	32.5	6	78	17	146	1	14	0	84	0.67
45552037--45552233	1	197.0	1	69	0	124	1	14	0	84	0.67
45552037--45552233	26	7.7	25	78	8	175	1	14	0	84	0.67
45552036--45552233	35	5.5	34	78	17	211	1	14	0	84	0.68
45557672--45557795	58	2.1	59	86	4	171	33	4	20	41	1.71
45557642--45557804	29	5.5	30	80	5	145	33	4	22	40	1.73
45558202--45558277	6	13.0	6	71	15	61	51	2	1	44	1.23
45558202--45558261	30	2.0	29	90	3	93	48	1	1	48	1.21
45558204--45558276	16	5.2	13	73	22	51	53	2	1	42	1.23
45567079--45567371	81	3.7	79	84	5	324	22	21	25	31	1.98
45567135--45567376	81	3.0	81	88	1	351	23	21	23	30	1.99
45575707--45575750	17	2.5	17	82	13	54	0	50	0	50	1.00
45586295--45586341	23	2.0	23	100	0	94	36	8	4	51	1.52
45586298--45586346	23	2.2	23	92	3	82	36	8	6	48	1.58
45590098--45590273	88	2.0	88	96	0	325	39	22	14	23	1.90
45593649--45593713	6	11.0	6	95	3	114	30	0	69	0	0.89
45593782--45593833	24	2.2	23	83	10	68	36	0	1	61	1.07
45595915--45595953	11	3.5	11	92	0	69	23	7	2	66	1.30
45601613--45601887	142	1.9	142	91	0	451	38	18	16	26	1.91
45608889--45608913	11	2.3	11	100	0	50	36	48	0	16	1.46
45613608--45614060	59	7.7	59	84	3	540	36	3	28	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45613598--45614060	117	4.0	117	84	4	587	36	4	28	31	1.77
45613727--45614060	30	11.5	29	64	17	97	36	2	27	32	1.72
45614135--45614634	162	3.1	162	95	0	892	43	11	17	26	1.84
45615418--45615456	19	2.0	20	85	14	55	46	0	0	53	1.00
45616213--45616240	14	2.0	14	100	0	56	57	0	7	35	1.26
45616487--45616741	38	6.7	36	69	14	158	33	16	16	33	1.91
45616438--45616741	76	4.0	76	94	0	491	32	17	15	34	1.91
45616441--45617097	152	4.0	154	76	14	510	29	18	17	35	1.93
45616701--45617021	92	3.5	92	95	0	554	25	19	18	35	1.95
45628846--45628901	27	2.1	26	83	3	67	23	10	37	28	1.88
45629570--45630072	162	3.1	162	95	0	902	43	12	17	26	1.84
45630877--45630915	19	2.0	20	85	14	55	46	0	2	51	1.14
45636192--45636234	23	1.9	22	85	4	59	41	0	11	46	1.40
45636175--45636260	31	2.8	30	80	5	91	45	1	6	46	1.37
45641228--45641259	16	2.0	16	93	0	55	34	0	0	65	0.93
45641467--45641515	22	2.2	23	85	3	64	73	8	8	10	1.25
45645014--45645056	18	2.6	16	92	7	68	53	0	0	46	1.00
45652602--45652657	26	2.2	25	81	12	60	60	8	7	23	1.51
45654148--45654179	15	2.0	17	88	11	50	34	0	9	56	1.32
45655103--45655152	25	2.0	25	96	0	91	28	20	14	38	1.91
45673440--45673471	16	2.0	16	100	0	64	25	25	6	43	1.77
45679235--45679375	75	1.9	75	87	0	210	36	12	15	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45686091--45686146	29	1.9	30	92	7	98	28	8	33	28	1.87
45686096--45686200	29	3.6	28	73	17	81	30	5	30	33	1.81
45686123--45686414	29	10.1	30	71	13	91	35	4	25	34	1.77
45686126--45686276	57	2.6	57	72	11	128	37	6	23	32	1.81
45686244--45686410	29	5.8	29	77	6	135	34	3	24	37	1.73
45686244--45686415	58	2.9	57	78	10	170	34	3	25	36	1.73
45688127--45688178	25	2.1	25	85	7	70	11	15	28	44	1.81
45688258--45688326	36	1.9	35	88	8	104	57	7	0	34	1.26
45691788--45692949	55	20.9	55	70	13	526	38	13	17	30	1.89
45691869--45692449	168	3.5	168	83	6	682	39	12	17	30	1.87
45692639--45692952	56	5.7	55	72	12	173	38	14	16	31	1.88
45708263--45708329	29	2.3	30	82	10	77	31	5	0	62	1.19
45711977--45712008	2	16.0	2	100	0	64	50	0	0	50	1.00
45725265--45725305	11	3.5	12	81	15	50	43	2	2	51	1.28
45732727--45732808	12	6.8	12	83	5	94	28	2	31	37	1.70
45733415--45733500	30	2.8	30	82	12	102	24	13	40	20	1.89
45736290--45736325	15	2.4	15	85	0	54	52	2	11	33	1.51
45738340--45738376	17	2.1	18	90	5	58	56	2	0	40	1.13
45738751--45738784	18	1.9	18	88	5	52	29	0	5	64	1.17
45743863--45743887	12	2.1	12	100	0	50	24	0	24	52	1.48
45752685--45752752	27	2.5	27	83	11	77	36	1	1	60	1.15
45752715--45752757	11	3.8	11	80	17	52	32	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45757507--45757673	60	2.8	60	89	3	250	33	4	31	31	1.77
45757507--45757668	30	5.4	29	71	17	127	33	4	31	30	1.77
45757685--45757886	30	6.7	30	93	2	318	34	3	24	37	1.73
45759387--45759418	15	2.1	15	100	0	64	15	12	53	18	1.73
45759477--45759547	14	5.3	14	83	16	105	19	12	28	39	1.88
45759475--45759547	27	2.7	27	95	2	130	20	12	27	39	1.88
45759597--45759629	17	1.9	17	100	0	66	54	9	0	36	1.32
45759639--45759684	18	2.6	18	82	6	58	50	2	6	41	1.40
45759615--45759669	24	2.3	24	80	0	65	49	3	3	43	1.37
45759599--45759694	42	2.3	41	81	8	106	51	3	4	41	1.37
45763787--45763845	2	29.5	2	100	0	118	0	49	0	50	1.00
45764201--45764300	49	2.0	49	96	0	182	28	18	19	35	1.94
45771141--45771208	30	2.3	30	89	0	109	26	10	23	39	1.87
45771536--45771609	35	2.1	37	89	5	116	40	8	9	41	1.67
45772077--45772119	6	7.5	6	82	10	54	51	2	0	46	1.13
45773426--45773675	59	4.2	59	87	4	344	33	26	2	38	1.71
45773455--45773616	30	5.4	30	68	24	110	33	24	3	39	1.71
45773426--45773649	29	7.7	29	66	23	114	33	26	2	37	1.71
45773426--45773717	59	4.9	59	84	3	327	31	28	4	35	1.76
45776517--45776548	3	10.7	3	93	0	55	28	0	34	37	1.57
45780703--45780736	7	4.9	7	88	0	50	14	11	44	29	1.81
45793096--45793139	10	4.2	11	80	11	56	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45797295--45797380	11	8.2	11	73	21	51	44	0	2	53	1.13
45797297--45797368	28	2.5	28	86	2	90	44	0	2	52	1.15
45797297--45797368	6	12.7	6	80	11	80	44	0	2	52	1.15
45797308--45797379	17	4.2	17	85	3	92	45	0	2	51	1.15
45798070--45798110	20	2.0	20	85	9	55	41	2	9	46	1.50
45799225--45799480	29	8.8	28	74	18	168	33	25	3	37	1.72
45799226--45799544	58	5.5	58	82	5	337	32	26	4	36	1.76
45799255--45799544	117	2.5	116	88	2	352	32	27	4	35	1.76
45811252--45811984	92	8.0	92	92	1	1184	33	15	19	31	1.93
45812240--45812283	17	2.6	16	82	7	52	50	2	0	47	1.13
45812240--45812287	11	4.3	11	84	5	60	50	2	0	47	1.12
45813008--45813048	20	2.0	20	85	9	55	41	2	9	46	1.50
45814149--45814229	29	2.7	30	79	7	103	38	22	2	37	1.68
45814180--45814544	58	6.3	59	84	6	444	32	27	4	35	1.76
45814195--45814543	117	3.0	115	85	6	465	32	28	4	34	1.77
45814240--45814545	29	10.5	29	70	24	152	32	28	4	34	1.78
45828876--45829036	81	2.0	81	91	2	261	27	22	17	31	1.97
45830094--45830122	9	3.2	9	100	0	58	89	0	10	0	0.48
45830909--45830938	14	2.1	14	100	0	60	56	0	20	23	1.42
45831067--45831142	20	3.9	19	74	6	71	44	0	10	44	1.38
45831635--45831701	32	2.2	31	86	10	93	61	7	1	29	1.32
45841485--45841802	159	2.0	157	91	1	519	27	26	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45843188--45843235	11	4.4	11	79	15	55	37	2	8	52	1.44
45844507--45844574	31	2.2	31	100	0	136	23	8	26	41	1.83
45856954--45857000	24	1.9	24	86	4	67	63	4	2	29	1.25
45864205--45864679	261	1.8	260	86	3	688	37	9	10	42	1.72
45864946--45864979	13	2.5	14	85	9	52	50	0	17	32	1.47
45864950--45864981	13	2.5	13	94	0	55	50	0	18	31	1.48
45870028--45870070	5	8.6	5	80	10	52	41	18	4	34	1.71
45870778--45870866	36	2.5	36	84	0	115	34	35	17	11	1.86
45877929--45877981	7	7.7	7	85	4	72	33	24	24	16	1.96
45877917--45877981	20	3.2	20	86	2	85	36	24	21	16	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182