genome.fa.s9.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  167  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50652631--50652995	30	12.6	29	72	14	138	37	4	24	32	1.76
50652776--50652884	56	1.9	57	87	10	163	44	4	22	28	1.72
50652669--50652995	59	5.6	59	76	12	207	37	4	25	33	1.75
50652850--50652995	60	2.5	59	82	5	161	35	4	24	35	1.75
50652886--50653011	30	4.2	30	85	0	153	32	4	27	34	1.78
50653754--50653816	26	2.5	24	82	10	63	50	3	3	42	1.34
50653779--50653822	6	8.0	6	76	19	51	54	0	0	45	0.99
50653779--50653846	17	4.1	17	86	7	104	54	1	0	44	1.09
50653779--50653821	15	2.7	15	92	7	68	53	0	0	46	1.00
50654165--50654610	203	2.2	204	89	3	671	22	24	17	35	1.95
50655431--50655520	45	2.1	44	81	6	103	16	25	10	47	1.78
50666364--50666495	59	2.3	59	82	11	148	35	7	24	32	1.84
50666364--50666582	29	7.5	29	72	14	157	36	7	24	31	1.84
50666453--50666614	59	2.8	59	82	6	179	37	6	22	33	1.79
50666421--50666582	88	1.9	87	89	3	254	36	6	24	32	1.82
50666433--50666619	59	3.2	58	79	5	146	36	6	24	32	1.81
50666421--50666801	30	12.8	30	77	9	219	38	4	22	34	1.75
50667495--50667601	55	1.9	56	83	9	139	23	19	2	54	1.57
50669622--50669672	24	2.2	22	86	6	66	27	0	21	50	1.48
50678883--50678956	37	2.0	37	100	0	148	35	5	18	40	1.74
50681405--50681442	5	7.6	5	100	0	76	18	0	0	81	0.69
50681657--50681695	18	2.2	18	86	9	53	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50688516--50688575	32	1.9	31	89	3	93	38	15	15	31	1.88
50688443--50688635	82	2.4	82	97	0	359	38	16	13	31	1.88
50697041--50697073	18	1.9	17	88	11	50	54	0	3	42	1.15
50697140--50697173	15	2.3	15	90	10	52	5	5	8	79	1.05
50704562--50704613	24	2.2	24	82	6	61	53	1	0	44	1.11
50704880--50704942	29	2.2	28	81	13	74	36	6	0	57	1.24
50713926--50713988	24	2.6	24	84	0	81	50	7	14	26	1.70
50715916--50715978	24	2.6	24	89	0	99	53	9	11	25	1.66
50726328--50726378	19	2.5	22	79	17	58	23	3	1	70	1.14
50729121--50729154	12	3.1	11	88	12	52	23	2	0	73	0.97
50729125--50729166	17	2.5	17	88	7	59	21	2	0	76	0.90
50729125--50729167	12	3.8	11	84	12	52	20	2	0	76	0.89
50731146--50731266	23	5.2	23	81	11	147	12	25	22	39	1.89
50731146--50731266	48	2.6	46	85	7	163	12	25	22	39	1.89
50731231--50731305	39	1.9	39	88	0	114	13	22	20	44	1.86
50731265--50731358	23	4.0	23	75	16	86	11	25	19	43	1.84
50737594--50737714	23	5.2	23	81	11	147	12	25	22	39	1.89
50737594--50737714	48	2.6	46	85	7	163	12	25	22	39	1.89
50737679--50737753	39	1.9	39	88	0	114	13	22	20	44	1.86
50737713--50737806	23	4.0	23	75	16	86	11	25	19	43	1.84
50739244--50739335	46	2.0	46	100	0	184	21	21	10	45	1.82
50739414--50739453	17	2.4	16	84	8	53	77	2	12	7	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50740948--50740986	14	2.7	15	80	8	53	25	7	10	56	1.59
50744803--50744846	22	2.0	22	100	0	88	45	4	9	40	1.56
50744864--50744912	18	2.9	16	76	8	53	44	2	8	44	1.45
50753826--50753856	16	2.0	16	93	6	55	64	0	0	35	0.94
50756801--50756862	13	4.8	13	75	0	52	37	16	6	40	1.74
50758477--50758501	9	2.8	9	100	0	50	44	0	0	56	0.99
50763375--50763400	2	13.0	2	100	0	52	50	0	0	50	1.00
50767554--50767620	34	2.0	34	93	0	116	46	28	0	25	1.53
50773114--50773211	8	11.5	8	71	24	60	61	0	7	31	1.23
50773174--50773206	17	2.1	17	88	11	52	66	0	3	30	1.06
50773145--50773211	26	2.5	26	83	11	73	59	0	7	32	1.25
50773466--50773521	18	3.2	17	76	20	53	30	1	0	67	1.01
50773608--50773826	88	2.5	89	78	9	225	32	6	19	41	1.78
50794327--50794382	25	2.2	25	87	0	76	33	1	3	60	1.24
50796137--50796174	16	2.3	17	86	4	51	44	5	7	42	1.56
50797058--50797211	76	2.0	76	100	0	308	33	20	22	23	1.97
50797238--50797276	18	2.2	18	86	9	53	38	0	0	61	0.96
50798919--50798981	24	2.6	24	84	0	81	57	3	6	33	1.40
50799174--50799260	36	2.4	37	82	1	104	33	20	14	31	1.93
50805350--50805387	19	2.1	19	85	5	51	26	10	5	57	1.53
50805413--50805483	30	2.4	29	81	9	90	45	1	4	49	1.30
50806728--50806814	43	2.0	43	97	0	165	35	24	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50810228--50810264	19	1.9	19	88	0	56	67	2	2	27	1.17
50819680--50819750	31	2.4	29	88	4	97	39	4	0	56	1.19
50819678--50819748	11	6.5	11	73	15	58	39	4	0	56	1.19
50819727--50819761	17	2.1	17	88	0	52	45	2	0	51	1.16
50819800--50819862	28	2.3	27	94	5	117	46	23	14	15	1.83
50820439--50820469	16	1.9	16	93	0	53	54	3	0	41	1.16
50820439--50820508	7	10.3	7	76	17	67	50	1	2	45	1.25
50820452--50820508	13	4.4	13	74	14	55	49	0	3	47	1.18
50820438--50820508	19	3.8	19	78	9	76	49	1	2	46	1.25
50821627--50821982	30	11.9	30	81	3	367	36	22	3	37	1.71
50821627--50822010	90	4.3	90	82	6	458	36	22	3	36	1.70
50821622--50822010	60	6.5	60	84	5	457	36	23	3	36	1.71
50821983--50822178	59	3.4	58	70	4	162	29	28	5	36	1.79
50826320--50826359	21	2.0	19	85	9	53	22	0	32	45	1.53
50828647--50828692	23	2.0	23	91	0	74	56	2	4	36	1.31
50828896--50828965	26	2.6	27	79	4	70	42	1	2	52	1.24
50828920--50828984	18	3.4	19	79	12	71	38	0	4	56	1.20
50837591--50837753	62	2.7	60	82	6	172	28	15	10	45	1.79
50837561--50837753	58	3.2	60	77	10	182	27	13	10	48	1.75
50838749--50838773	3	8.3	3	100	0	50	36	64	0	0	0.94
50842644--50842680	18	2.1	18	89	0	56	70	5	0	24	1.08
50846209--50846242	16	2.1	17	88	5	52	26	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50846225--50846272	21	2.2	22	81	7	62	33	2	2	62	1.18
50848767--50848792	12	2.2	12	100	0	52	61	15	0	23	1.33
50849421--50849462	2	21.0	2	100	0	84	0	50	0	50	1.00
50850627--50850680	24	2.2	24	80	9	56	44	3	0	51	1.19
50853595--50853653	22	2.7	22	71	10	59	8	20	0	71	1.12
50857395--50857543	61	2.5	61	86	4	196	26	9	9	55	1.62
50857790--50857924	31	4.6	29	67	20	73	47	10	14	27	1.77
50857739--50857924	88	2.1	89	84	3	250	46	11	16	25	1.80
50873337--50873480	59	2.5	58	80	11	163	35	4	28	31	1.78
50874147--50874198	22	2.4	22	100	0	104	5	48	23	23	1.72
50874537--50874571	16	2.2	16	90	5	54	51	0	2	45	1.16
50875208--50875280	6	12.2	6	75	16	62	47	0	4	47	1.21
50875215--50875290	11	6.6	11	71	14	55	48	1	3	46	1.29
50875239--50875290	16	3.3	15	84	10	61	51	1	3	42	1.31
50875744--50875920	32	5.3	31	65	15	102	25	20	18	34	1.96
50875712--50876183	68	6.9	68	96	0	836	27	19	18	34	1.96
50875712--50876173	37	13.4	36	67	16	291	27	19	18	33	1.96
50892624--50892736	30	3.7	30	95	1	181	33	1	23	41	1.65
50893737--50893771	16	2.2	16	90	5	54	51	0	2	45	1.16
50894408--50894486	6	13.2	6	75	19	67	44	2	1	51	1.23
50894408--50894496	17	5.4	16	79	12	83	44	3	1	50	1.25
50896523--50896576	28	1.9	28	96	0	99	61	25	3	9	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50896701--50896745	22	2.0	22	83	8	56	55	20	0	24	1.43
50896918--50897084	50	3.3	50	86	0	235	35	21	14	28	1.93
50896897--50897083	100	1.9	100	88	0	284	34	21	14	28	1.93
50902916--50902986	37	2.0	36	89	8	110	21	11	7	60	1.54
50903218--50903275	26	2.2	26	75	0	62	51	6	0	41	1.28
50903876--50903915	19	2.1	19	90	0	62	32	2	0	65	1.06
50905310--50905351	20	2.1	20	100	0	84	42	19	0	38	1.51
50912007--50912067	28	2.2	28	82	5	70	27	1	1	68	1.08
50911993--50912077	39	2.1	39	83	12	102	27	1	1	70	1.02
50912026--50912075	9	5.6	9	78	19	52	24	2	0	74	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182