genome.fa.s9.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  135  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42276644--42276702	28	2.1	28	84	6	75	32	10	23	33	1.88
42277062--42277139	6	13.7	6	71	15	67	50	1	1	47	1.17
42277062--42277137	17	4.5	17	75	9	66	48	1	1	48	1.18
42277074--42277137	17	3.8	17	80	10	78	50	1	1	46	1.20
42277074--42277145	17	4.2	17	81	0	72	54	1	1	43	1.17
42277650--42278131	194	2.4	196	84	6	603	21	22	20	35	1.96
42278291--42278419	39	3.3	39	68	6	109	24	17	32	25	1.97
42278293--42278459	77	2.1	79	86	2	239	23	19	30	25	1.98
42278315--42278460	39	3.7	39	68	16	104	23	21	28	26	1.99
42290873--42291091	30	7.3	29	74	10	174	34	4	26	35	1.77
42290873--42291091	90	2.4	89	80	9	232	34	4	26	35	1.77
42292615--42292685	28	2.6	28	79	16	71	32	9	21	36	1.86
42292626--42292685	28	2.1	28	87	6	86	35	10	23	31	1.88
42293058--42293109	6	9.3	6	76	16	58	50	0	0	50	1.00
42293056--42293109	22	2.5	22	84	9	74	48	0	0	51	1.00
42293066--42293115	17	3.0	17	85	8	59	54	0	0	46	1.00
42296185--42296222	19	2.1	19	90	5	60	26	2	0	71	1.00
42303513--42303546	17	2.0	17	88	0	50	29	2	0	67	1.05
42304154--42304190	16	2.3	16	90	0	56	35	13	24	27	1.93
42305132--42305167	17	2.1	18	94	5	65	47	0	11	41	1.39
42315349--42315390	17	2.3	18	80	12	50	45	0	0	54	0.99
42321409--42321523	43	2.7	44	84	4	137	21	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42321426--42321523	43	2.3	43	89	0	151	21	30	23	24	1.99
42321824--42321876	21	2.5	21	90	0	79	0	45	20	33	1.52
42321878--42322019	66	2.2	66	84	6	198	16	20	16	47	1.83
42323405--42323651	49	5.1	49	95	1	435	45	5	0	48	1.29
42323484--42323655	26	7.1	24	64	25	85	45	6	0	47	1.28
42326269--42326299	15	2.1	15	100	0	62	38	16	6	38	1.74
42326530--42326599	35	2.0	35	97	0	131	20	15	37	27	1.93
42326683--42326740	22	2.6	22	94	0	107	12	22	12	53	1.70
42326999--42327071	25	2.9	25	69	17	62	42	0	4	53	1.20
42327829--42327866	17	2.2	17	100	0	76	21	26	34	18	1.96
42327853--42328218	41	9.0	40	79	9	291	23	25	24	26	2.00
42327853--42328217	82	4.5	81	78	9	332	23	26	24	26	2.00
42334306--42334343	16	2.4	16	86	8	51	15	21	2	60	1.47
42334631--42334699	31	2.2	32	86	2	95	34	13	11	40	1.80
42334798--42334845	15	2.8	17	81	15	55	37	0	6	56	1.25
42337715--42337744	13	2.3	13	94	0	51	6	6	3	83	0.90
42338572--42338632	32	1.9	32	87	12	90	26	0	3	70	1.02
42339182--42339398	96	2.3	96	86	4	305	17	23	18	40	1.91
42339121--42339462	49	7.1	49	72	11	204	17	22	19	40	1.91
42350171--42350228	32	1.9	30	86	10	82	44	15	0	39	1.47
42351266--42351296	14	2.1	15	94	5	55	25	3	19	51	1.62
42351311--42351372	26	2.4	25	84	12	81	19	1	4	74	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42352277--42352342	33	2.1	32	83	10	84	30	3	4	62	1.30
42361420--42361541	30	4.1	30	86	0	172	18	25	18	37	1.93
42361421--42361539	60	2.0	60	94	0	211	18	24	18	38	1.93
42361377--42361541	90	1.8	89	87	3	242	18	25	18	37	1.93
42363058--42363083	10	2.6	10	100	0	52	30	11	30	26	1.92
42365800--42365873	37	2.0	37	89	5	114	41	10	0	47	1.38
42373438--42373467	14	2.1	14	100	0	60	26	20	10	43	1.83
42380392--42380450	29	2.0	29	90	0	91	22	10	33	33	1.87
42380552--42380580	5	5.8	5	100	0	58	17	0	0	82	0.66
42383093--42383138	19	2.2	21	81	11	60	39	0	4	56	1.19
42383216--42383245	9	3.3	9	90	0	51	30	10	13	46	1.75
42392387--42392440	21	2.6	20	82	11	65	35	24	11	29	1.90
42396169--42396326	27	5.9	27	77	3	156	26	21	15	36	1.94
42398075--42398232	80	2.0	80	85	5	212	31	11	15	41	1.83
42402169--42402223	24	2.3	24	90	0	83	38	1	5	54	1.34
42404761--42404829	18	3.8	18	88	0	102	31	23	23	21	1.98
42406760--42407023	36	7.4	36	83	3	327	31	10	23	35	1.88
42406760--42407011	72	3.5	72	88	2	364	30	10	23	35	1.89
42406762--42407023	142	1.8	141	86	1	335	31	10	22	35	1.88
42408627--42408681	19	2.8	19	76	13	58	58	5	14	21	1.57
42409109--42409190	28	2.9	28	94	0	146	9	21	20	47	1.79
42409109--42409202	28	3.3	27	88	7	134	13	21	19	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42410419--42410807	23	17.0	23	84	2	460	35	4	13	47	1.62
42415263--42415293	14	2.2	14	94	0	53	48	0	0	51	1.00
42415264--42415306	9	4.8	9	76	0	50	48	0	0	51	1.00
42416575--42416626	21	2.3	23	74	6	54	61	1	32	3	1.25
42417010--42417112	34	3.0	34	85	4	136	17	32	1	48	1.58
42417008--42417110	17	6.2	17	70	10	61	19	32	1	46	1.61
42418327--42418374	24	2.0	24	83	0	60	12	16	47	22	1.80
42423119--42423161	19	2.2	20	91	4	70	83	6	9	0	0.80
42425528--42425846	95	3.4	95	90	5	456	34	10	15	38	1.83
42425773--42426987	92	13.2	92	89	3	1720	33	19	17	29	1.95
42425773--42426987	183	6.6	183	89	4	1714	33	19	17	29	1.95
42425773--42426987	275	4.4	275	91	3	1865	33	19	17	29	1.95
42426701--42426846	53	3.3	42	70	23	127	35	17	15	31	1.91
42427590--42427698	11	10.1	11	68	19	52	37	0	4	56	1.26
42427592--42427716	17	7.3	17	83	4	153	40	0	4	54	1.25
42427620--42427700	6	14.0	6	75	12	71	39	1	3	55	1.25
42427620--42427686	23	2.9	22	84	8	73	38	0	4	56	1.19
42427715--42427751	15	2.6	15	87	8	51	51	13	5	29	1.63
42429627--42429843	29	7.5	30	68	18	122	33	29	0	36	1.64
42429595--42429701	28	3.8	28	73	18	105	34	21	0	42	1.59
42429600--42429843	59	4.2	58	88	5	286	34	27	1	37	1.65
42437076--42437260	37	5.0	37	78	5	194	11	20	34	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42437169--42437238	21	3.6	21	64	18	60	7	21	37	34	1.81
42437077--42437260	74	2.5	74	87	2	253	10	20	34	34	1.87
42438184--42438220	19	1.9	19	88	0	56	24	21	5	48	1.71
42446106--42446197	45	2.0	45	100	0	184	17	23	15	43	1.87
42461109--42461141	13	2.3	15	90	10	52	51	0	6	42	1.26
42463346--42463374	5	5.8	5	100	0	58	41	0	20	37	1.53
42464877--42464932	16	3.5	16	78	7	51	35	7	17	39	1.78
42472434--42472473	20	2.0	21	95	5	73	67	0	15	17	1.23
42472447--42472472	12	2.2	12	100	0	52	69	0	15	15	1.20
42473359--42473423	33	2.0	33	93	0	112	32	18	15	33	1.92
42480164--42480227	24	2.7	24	90	4	94	50	10	20	18	1.77
42481247--42481417	43	4.0	43	78	8	179	29	25	15	29	1.96
42489855--42489943	30	2.9	29	85	6	97	52	1	0	46	1.07
42489904--42489946	21	2.0	21	86	8	61	48	0	0	51	1.00
42490582--42490726	41	3.5	39	75	17	139	20	28	13	37	1.90
42491418--42491601	92	2.0	92	92	3	309	34	2	17	46	1.60
42492434--42492627	42	4.8	40	75	13	162	19	20	17	42	1.90
42492404--42492631	40	5.6	40	75	6	181	19	19	17	43	1.88
42500291--42500353	17	3.5	17	75	12	63	46	3	1	49	1.27
42502724--42502754	13	2.4	13	100	0	62	16	25	19	38	1.92
42503179--42503791	123	5.0	123	87	2	822	43	8	10	37	1.70
42503650--42503696	22	2.2	21	81	11	51	55	2	8	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42508457--42508539	17	4.7	17	75	12	69	39	10	6	43	1.64
42513015--42513053	21	2.0	20	85	10	53	25	15	17	41	1.89
42536704--42536746	17	2.7	15	83	16	52	51	9	34	4	1.55
42537062--42537110	21	2.5	20	83	6	55	59	8	24	8	1.54
42537825--42537870	10	4.3	11	86	8	60	80	0	19	0	0.71
42537825--42537864	15	2.5	15	84	8	53	80	0	20	0	0.72
42537920--42538036	39	3.0	39	98	0	225	29	10	17	43	1.81
42538366--42538423	29	2.0	29	96	0	107	29	13	32	24	1.94
42545193--42545228	17	2.2	17	90	9	58	55	16	5	22	1.62
42545193--42545228	16	2.2	17	90	5	56	55	16	5	22	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182