genome.fa.s9.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  156  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48003891--48004185	123	2.3	127	80	8	305	24	28	26	21	1.99
48004077--48004174	51	1.9	50	91	6	162	21	29	23	25	1.99
48005311--48005473	44	3.6	44	83	3	200	14	50	7	27	1.68
48007568--48007625	29	1.9	30	82	6	73	25	22	0	51	1.48
48008013--48008059	18	2.6	18	75	0	58	48	2	2	46	1.25
48007954--48008803	112	7.9	112	82	13	1084	46	2	4	46	1.37
48008132--48008262	18	7.9	18	69	16	104	50	0	3	45	1.22
48008116--48008262	48	3.0	48	95	2	267	49	0	3	46	1.23
48007954--48008833	209	4.1	218	83	10	1089	46	2	4	46	1.37
48008438--48008583	48	3.0	48	92	2	256	50	0	2	46	1.20
48007954--48008852	321	2.8	321	96	0	1665	46	2	4	46	1.37
48008751--48008856	49	2.2	49	96	0	185	50	1	3	44	1.31
48008490--48009267	273	2.9	273	87	5	1082	45	2	4	46	1.38
48008800--48009192	112	3.5	112	93	0	671	45	3	5	45	1.42
48009128--48009214	22	3.8	22	68	21	70	48	0	3	48	1.18
48009143--48009240	48	2.0	48	100	0	196	50	0	4	45	1.20
48008143--48009273	161	6.9	159	75	14	527	46	2	4	46	1.38
48014892--48015011	64	1.9	63	84	3	159	41	19	22	16	1.90
48015333--48015510	43	4.2	42	84	2	239	29	21	27	21	1.99
48015333--48015509	85	2.1	86	89	3	268	29	21	27	22	1.99
48017090--48017282	30	6.5	28	76	12	154	37	23	3	35	1.73
48017088--48017282	60	3.3	58	82	6	205	36	24	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48020661--48020707	22	2.2	22	88	3	69	74	4	6	14	1.17
48030634--48030673	21	1.9	21	94	0	71	25	17	40	17	1.91
48031820--48031862	21	2.0	21	90	4	68	72	6	6	13	1.27
48032681--48032723	19	2.3	19	84	8	52	58	4	0	37	1.19
48036976--48037021	25	1.9	25	86	8	69	32	4	6	56	1.45
48038099--48038149	19	2.5	22	79	17	58	23	3	1	70	1.14
48041846--48041911	12	5.2	12	77	17	55	75	0	15	9	1.03
48041846--48041905	26	2.3	27	88	8	88	76	0	13	10	1.01
48041847--48041918	27	2.6	28	80	10	87	76	1	13	8	1.08
48042941--48042986	25	1.9	25	86	8	69	32	4	6	56	1.45
48048686--48049173	59	8.3	58	87	7	616	35	3	28	32	1.74
48049303--48049799	161	3.1	160	85	5	682	43	12	17	25	1.85
48050365--48050398	17	2.1	16	88	5	50	20	8	0	70	1.13
48051371--48051462	6	15.2	6	76	15	91	47	0	4	47	1.21
48051388--48051462	31	2.5	28	89	8	105	52	0	4	44	1.20
48051404--48051454	11	4.8	11	76	9	52	52	0	5	41	1.25
48051391--48051467	37	2.1	38	85	7	104	50	1	3	44	1.28
48051398--48051471	17	4.6	17	83	11	93	52	1	4	41	1.28
48051437--48051489	27	2.0	27	84	0	70	50	7	1	39	1.41
48051784--48051964	91	2.0	91	88	0	272	29	18	19	32	1.95
48052017--48052124	31	3.3	31	67	16	83	29	21	14	34	1.93
48052109--48052578	76	6.2	76	92	1	687	31	18	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48051889--48052578	152	4.6	151	84	6	860	31	19	16	33	1.94
48060466--48060907	221	2.0	221	99	0	866	23	27	18	30	1.98
48064667--48065157	59	8.4	59	88	3	706	35	3	29	31	1.75
48064678--48065161	117	4.1	117	85	5	692	35	3	28	32	1.74
48064678--48065128	29	15.3	30	66	23	114	35	3	28	32	1.74
48064667--48065161	176	2.8	175	86	4	728	35	3	29	31	1.75
48065288--48065778	154	3.1	160	82	7	633	43	12	17	26	1.84
48066350--48066383	17	2.1	16	88	5	50	20	8	0	70	1.13
48067254--48067307	27	1.9	27	85	7	72	24	11	24	40	1.87
48067345--48067399	6	9.2	6	76	7	58	43	0	5	50	1.25
48068980--48069024	19	2.4	19	81	7	56	37	0	4	57	1.19
48071660--48071736	17	4.5	17	85	0	82	42	0	3	53	1.19
48071661--48071723	6	11.0	6	81	10	60	42	0	4	52	1.22
48071668--48071722	11	4.9	11	86	8	58	40	0	5	54	1.23
48073622--48073765	30	4.9	30	72	13	120	35	27	2	34	1.69
48073582--48073670	30	3.0	29	74	12	90	34	21	4	39	1.74
48073600--48073872	30	9.2	30	67	16	106	35	25	1	37	1.65
48073571--48073872	59	5.1	58	77	10	217	36	25	1	36	1.67
48073673--48073872	59	3.4	59	81	2	242	36	26	1	36	1.63
48079034--48079084	17	3.0	17	88	0	75	37	1	1	58	1.20
48080836--48081018	30	6.1	30	72	10	135	34	25	4	35	1.76
48080845--48081018	60	2.9	60	86	2	226	35	25	4	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48082665--48082726	22	2.8	23	80	9	76	69	1	12	16	1.27
48095484--48095526	21	2.0	21	90	4	68	72	6	6	13	1.27
48096346--48096388	19	2.3	19	84	8	52	58	4	0	37	1.19
48110055--48110740	76	9.0	76	87	2	902	34	16	17	32	1.92
48110055--48110740	153	4.5	152	88	2	941	34	16	17	32	1.92
48110055--48110697	229	2.8	228	91	1	1002	34	16	16	32	1.91
48110998--48111074	6	12.8	6	72	14	61	40	1	2	55	1.22
48111011--48111073	17	3.9	16	80	16	76	38	1	1	58	1.17
48111005--48111067	11	5.9	11	76	14	60	38	1	1	58	1.17
48111863--48111916	25	2.3	23	79	14	74	44	0	11	44	1.39
48134896--48134948	23	2.3	23	96	0	97	20	18	9	50	1.74
48137193--48137225	6	5.5	6	89	10	50	0	15	0	84	0.61
48137190--48137231	17	2.4	17	85	14	59	0	14	0	85	0.59
48137201--48137231	11	2.9	11	95	4	55	0	16	0	83	0.64
48137785--48137850	17	3.9	17	75	0	60	48	13	18	19	1.81
48137785--48137850	34	1.9	34	82	11	82	48	13	18	19	1.81
48141583--48141638	21	2.5	22	77	11	60	33	19	0	46	1.50
48143612--48143653	18	2.3	19	91	4	68	14	38	23	23	1.92
48143822--48143847	2	13.0	2	100	0	52	50	0	50	0	1.00
48146915--48146964	23	2.1	25	78	17	61	60	0	0	40	0.97
48147633--48147674	23	1.9	22	85	9	59	61	9	2	26	1.39
48154887--48154928	21	2.0	21	90	4	68	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48161606--48161641	13	2.8	13	95	0	63	27	38	16	16	1.90
48163006--48163086	39	2.0	40	92	2	137	29	20	17	32	1.96
48163009--48163102	39	2.4	38	85	7	109	29	21	18	30	1.97
48169591--48169629	15	2.8	13	78	14	51	66	2	0	30	1.05
48174224--48174295	17	4.2	17	73	7	65	37	4	5	52	1.44
48174218--48174284	34	2.0	34	90	0	107	32	2	8	55	1.46
48174520--48174572	25	2.1	25	92	0	88	20	49	11	18	1.78
48174869--48175067	41	4.9	41	89	2	310	32	22	28	17	1.96
48174809--48175067	82	3.2	82	86	3	328	34	21	27	16	1.95
48178270--48178584	43	7.3	43	85	2	391	25	17	28	28	1.98
48178301--48178584	129	2.2	128	91	1	444	26	17	28	27	1.98
48178595--48178875	140	2.0	140	99	0	553	22	23	21	32	1.98
48179095--48179171	3	25.0	3	75	15	68	58	3	1	36	1.25
48179079--48179170	12	7.2	12	77	16	87	56	4	1	38	1.26
48180237--48180621	29	13.1	29	67	14	105	36	27	4	32	1.76
48180247--48180692	59	7.6	59	82	2	450	35	26	5	32	1.79
48185181--48185258	39	2.0	39	87	0	111	32	7	14	46	1.72
48189519--48189581	28	2.2	28	80	2	72	26	11	25	36	1.90
48189561--48189759	59	3.4	58	79	8	212	35	5	29	29	1.80
48189731--48189785	19	3.3	19	63	36	54	27	3	29	40	1.73
48189707--48189993	30	9.6	30	92	0	414	36	1	22	39	1.65
48191778--48191835	17	3.5	17	86	11	68	53	6	0	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48191804--48191857	24	2.2	24	86	0	72	51	1	1	44	1.22
48191809--48191875	18	3.7	18	82	6	64	50	1	4	43	1.31
48204981--48205043	24	2.6	24	89	0	99	25	14	9	50	1.72
48207225--48207284	31	2.0	30	83	3	75	46	10	8	35	1.67
48209755--48209795	21	1.9	22	90	5	66	34	2	4	58	1.32
48214567--48214610	22	2.0	22	100	0	88	22	27	9	40	1.84
48216305--48216364	23	2.6	24	84	7	88	36	15	18	30	1.91
48216410--48216479	23	3.0	23	100	0	140	34	27	4	34	1.76
48216845--48216901	23	2.4	24	80	11	64	45	1	1	50	1.22
48216865--48216976	21	5.1	23	71	21	71	49	2	0	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182