genome.fa.s9.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  128  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40624257--40624283	4	6.8	4	100	0	54	77	0	22	0	0.76
40625124--40625405	40	7.0	41	76	8	208	31	24	14	29	1.95
40625124--40625405	39	7.0	40	77	7	209	31	24	14	29	1.95
40630842--40630877	4	9.0	4	87	0	54	30	0	0	69	0.89
40633373--40633411	18	2.2	18	86	9	53	20	0	5	74	1.01
40647819--40647891	27	2.7	27	79	8	69	39	19	23	17	1.92
40647873--40647914	20	2.0	21	90	4	68	38	19	21	21	1.94
40651613--40651643	11	2.9	11	95	4	55	16	9	6	67	1.39
40652271--40652322	14	3.7	14	78	0	59	23	13	5	57	1.57
40652271--40652338	28	2.5	27	83	9	77	23	16	4	55	1.58
40654373--40654416	8	5.8	8	78	10	56	36	2	2	59	1.23
40658475--40658534	22	2.9	19	75	15	66	36	1	0	61	1.06
40668213--40668262	21	2.4	21	96	0	91	30	36	2	32	1.69
40671650--40671710	31	2.0	31	90	0	95	39	9	16	34	1.82
40681622--40681706	41	2.1	41	88	4	127	55	10	11	22	1.66
40682788--40682842	26	2.1	27	82	3	67	34	3	1	60	1.25
40683103--40683145	2	21.5	2	90	0	68	46	48	0	4	1.22
40687723--40687775	26	2.0	26	85	7	70	56	1	5	35	1.34
40688888--40688927	17	2.3	18	86	4	55	37	2	7	52	1.43
40689858--40689892	17	2.0	18	88	5	54	17	5	5	71	1.25
40702307--40702362	24	2.4	24	81	3	69	35	1	7	55	1.38
40709721--40709783	25	2.5	26	82	7	76	25	17	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40714778--40714824	24	1.9	25	82	4	60	65	2	0	31	1.04
40727438--40727475	19	2.1	18	90	9	60	60	2	0	36	1.11
40736839--40736891	18	2.9	18	73	15	56	33	0	3	62	1.13
40736851--40736903	28	1.9	27	85	11	72	35	0	3	60	1.15
40737473--40737526	28	1.9	28	92	0	90	57	12	0	29	1.36
40738412--40738437	11	2.4	11	100	0	52	80	11	0	7	0.89
40740005--40740035	16	1.9	16	93	0	53	22	0	3	74	0.96
40740002--40740043	19	2.2	19	83	8	50	23	0	7	69	1.13
40740231--40740290	11	5.5	11	82	9	61	36	0	1	61	1.06
40740236--40740292	6	10.0	6	75	11	57	40	0	1	57	1.09
40740236--40740311	17	4.5	17	81	0	89	40	1	2	55	1.22
40740965--40741013	3	15.3	3	83	8	53	63	0	0	36	0.95
40740965--40741012	13	3.7	13	83	8	62	64	0	0	35	0.94
40742198--40742274	27	2.8	27	82	7	75	36	24	2	36	1.70
40742108--40742337	29	8.0	28	75	16	134	36	24	2	36	1.70
40742169--40742332	85	1.9	85	79	7	181	35	24	2	37	1.69
40742298--40742377	38	2.1	39	92	2	135	35	28	3	32	1.75
40742242--40742422	96	1.9	95	84	6	242	34	25	3	35	1.75
40742385--40742623	29	8.3	28	78	4	185	30	25	11	31	1.91
40742385--40742623	58	4.1	58	81	2	250	30	25	11	31	1.91
40742407--40742623	87	2.5	88	78	5	253	31	25	11	30	1.92
40754795--40755233	209	2.1	209	84	2	551	36	17	21	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40755539--40755628	11	8.0	11	74	9	74	40	1	2	56	1.19
40755540--40755649	17	6.5	17	82	3	132	40	1	2	54	1.25
40755568--40755628	23	2.7	22	84	2	68	40	1	1	55	1.19
40755592--40755645	28	1.9	28	85	7	74	42	3	1	51	1.30
40756318--40756362	3	14.3	3	81	9	54	62	0	0	37	0.96
40756318--40756361	13	3.5	13	87	3	63	63	0	0	36	0.95
40757520--40757711	56	3.4	57	80	9	205	34	29	2	34	1.69
40757485--40757732	28	8.6	28	76	10	166	35	26	3	35	1.73
40757440--40757752	28	10.9	29	70	14	152	33	26	3	36	1.75
40757520--40757940	29	14.6	29	72	9	190	32	25	7	35	1.83
40757548--40757956	87	4.7	88	75	9	283	32	25	7	34	1.84
40757890--40757966	29	2.7	29	82	8	77	37	25	2	33	1.70
40770026--40770066	21	2.0	21	85	0	55	24	17	21	36	1.94
40779888--40780078	99	1.9	99	95	0	346	35	18	18	27	1.94
40781189--40781242	21	2.6	21	81	0	63	25	14	27	31	1.95
40782181--40782237	25	2.3	24	85	11	80	22	5	3	68	1.25
40782181--40782230	21	2.4	21	77	12	57	24	6	4	66	1.32
40783473--40783513	20	2.2	19	86	8	57	17	4	7	70	1.28
40783732--40783968	104	2.3	105	88	7	344	28	12	17	41	1.86
40788156--40788191	13	2.8	13	91	0	54	41	19	0	38	1.52
40788175--40788251	13	5.8	13	73	14	50	35	12	5	46	1.65
40788670--40789047	45	8.4	45	79	1	355	21	17	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40788653--40789002	135	2.6	135	85	0	441	22	17	20	40	1.91
40788804--40789047	89	2.7	90	88	2	357	20	18	20	40	1.92
40790369--40790419	24	2.1	24	85	7	68	41	3	7	47	1.51
40790620--40790664	19	2.4	19	81	7	56	37	0	4	57	1.19
40792288--40792349	8	7.6	8	75	10	54	16	4	0	79	0.90
40792279--40792304	6	4.3	6	100	0	52	15	0	0	84	0.62
40793785--40793829	19	2.4	19	81	7	56	37	0	4	57	1.19
40794633--40794662	16	1.9	16	93	6	53	13	13	3	70	1.30
40794628--40794687	21	2.8	21	82	9	68	13	11	5	70	1.33
40798466--40798500	5	6.8	5	90	3	52	17	0	2	80	0.84
40806810--40807098	143	2.0	143	100	0	578	31	11	13	42	1.81
40815099--40815145	20	2.3	20	85	3	58	27	10	21	40	1.86
40823872--40823929	27	2.2	26	84	3	80	67	1	1	29	1.11
40825087--40825145	17	3.6	16	75	8	55	32	1	1	64	1.13
40830876--40830910	16	2.1	17	89	5	54	20	2	0	77	0.90
40831030--40831062	14	2.3	15	85	15	52	21	0	3	75	0.93
40832108--40832154	20	2.4	20	78	3	51	65	2	2	29	1.15
40832108--40832145	15	2.5	15	84	12	51	68	0	2	28	1.03
40833415--40833476	32	1.9	32	90	0	97	40	12	12	33	1.82
40834944--40834991	25	1.9	25	91	8	80	37	20	4	37	1.72
40840043--40840069	3	9.0	3	100	0	54	33	0	0	66	0.92
40844762--40844826	14	4.0	16	77	22	57	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40844786--40844844	11	5.6	11	80	11	61	0	30	0	69	0.89
40844786--40844846	4	15.2	4	78	13	63	0	31	0	68	0.89
40844775--40844827	24	2.2	24	86	3	70	0	24	0	75	0.80
40844770--40844845	32	2.4	31	84	8	91	0	27	0	72	0.85
40845830--40845897	33	2.1	33	100	0	136	27	8	26	36	1.86
40850643--40850756	40	3.0	37	78	7	104	22	21	25	29	1.99
40852554--40852604	24	2.1	24	100	0	102	23	11	7	56	1.61
40852554--40852616	24	2.6	24	92	0	90	25	14	9	50	1.72
40852971--40853018	22	2.2	22	85	7	62	64	4	8	22	1.38
40853685--40853743	30	2.0	30	90	6	93	42	11	11	33	1.78
40857953--40858025	29	2.5	29	77	0	83	45	5	1	47	1.34
40858864--40858920	28	2.0	28	86	0	78	50	5	1	42	1.35
40863834--40863871	19	2.1	18	90	9	60	60	2	0	36	1.11
40870392--40870442	25	2.0	25	100	0	102	35	15	7	41	1.76
40871607--40871633	9	3.0	9	100	0	54	33	0	0	66	0.92
40871612--40871660	25	1.9	26	83	4	64	40	2	2	55	1.23
40881069--40881158	24	3.8	24	89	0	126	26	30	21	22	1.99
40881069--40881161	48	1.9	48	88	0	141	29	29	20	21	1.98
40881144--40881247	27	3.8	26	83	7	82	37	24	14	24	1.92
40881166--40881245	27	3.0	27	90	3	117	37	23	13	25	1.92
40885288--40885445	24	6.6	24	90	0	217	27	25	22	24	2.00
40885439--40885530	27	3.4	27	82	5	107	35	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40888743--40888982	107	2.2	107	92	2	410	35	16	23	24	1.94
40890105--40890151	21	2.2	21	96	0	85	34	29	10	25	1.90
40897097--40897209	29	3.9	29	80	0	136	23	15	15	46	1.84
40901071--40901246	33	5.3	32	76	11	165	27	13	27	31	1.93
40901027--40901223	101	2.0	101	92	0	331	26	15	27	29	1.96
40902059--40902153	46	2.1	46	96	4	174	33	13	24	28	1.93
40902178--40902233	21	2.7	21	72	10	51	28	7	26	37	1.83
40905275--40905379	25	4.2	25	96	1	185	27	23	23	24	2.00
40907293--40907339	20	2.4	20	78	3	51	65	2	0	31	1.04
40907353--40907385	16	2.1	16	94	0	57	39	12	9	39	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182