genome.fa.s9.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  40  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15135060--15135177	24	4.9	24	89	0	182	27	23	22	26	2.00
15138234--15138396	30	5.4	30	82	2	175	38	1	21	39	1.61
15138253--15138396	61	2.4	61	84	2	182	36	1	20	40	1.62
15139416--15139440	12	2.1	12	100	0	50	52	0	0	48	1.00
15140251--15140356	17	6.3	16	85	9	122	53	1	0	43	1.18
15140265--15140353	6	15.7	6	79	11	107	53	1	1	43	1.15
15140264--15140353	11	8.0	11	77	14	94	54	1	1	43	1.14
15140617--15141251	91	6.9	91	92	0	946	27	17	19	34	1.95
15140859--15140999	45	3.1	45	60	20	103	28	19	17	34	1.94
15140617--15141251	274	2.3	274	90	0	966	27	17	19	34	1.95
15152998--15153060	28	2.2	28	83	5	74	26	11	28	33	1.91
15153127--15153295	30	5.6	30	81	6	173	37	1	23	37	1.65
15153158--15153294	61	2.3	59	85	8	188	39	0	21	38	1.59
15154322--15154402	31	2.7	29	81	7	83	46	2	4	45	1.37
15156301--15156325	12	2.1	12	100	0	50	36	0	24	40	1.55
15158712--15158831	33	3.9	31	76	18	117	24	20	10	45	1.83
15158680--15158836	59	2.6	59	87	6	210	24	17	10	48	1.77
15158680--15158857	62	3.0	59	84	6	182	26	16	10	46	1.80
15160270--15160317	24	1.9	25	83	8	62	56	0	2	41	1.11
15170420--15170451	16	2.0	16	100	0	64	37	31	12	18	1.88
15176209--15176250	3	14.0	3	89	0	66	66	4	28	0	1.12
15176697--15176738	19	2.4	17	84	8	57	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15177042--15177106	22	2.8	23	81	6	78	6	29	21	43	1.77
15177064--15177140	40	1.9	41	83	2	102	7	25	22	44	1.79
15187483--15187513	2	15.5	2	100	0	62	48	0	0	51	1.00
15190042--15190085	14	2.8	16	80	16	56	52	0	0	47	1.00
15192094--15192339	123	2.0	123	98	0	474	21	17	20	39	1.92
15195173--15195204	14	2.3	14	100	0	64	46	18	0	34	1.49
15195073--15195551	186	2.5	190	92	2	759	43	17	5	34	1.71
15195554--15195606	13	4.2	13	85	2	72	39	35	0	24	1.56
15195552--15195609	19	3.0	19	80	12	64	39	36	0	24	1.55
15196009--15196101	39	2.4	38	83	7	98	31	23	16	29	1.96
15200955--15201034	39	2.0	40	87	2	117	30	20	18	31	1.96
15202024--15202074	23	2.2	24	89	3	77	41	25	0	33	1.56
15202137--15202177	21	2.0	21	85	9	57	39	21	9	29	1.86
15202779--15202807	2	14.5	2	100	0	58	48	0	0	51	1.00
15205721--15205752	16	1.9	17	93	6	57	37	6	0	56	1.25
15205809--15205858	24	2.1	24	85	10	68	50	2	2	46	1.24
15206526--15206554	15	1.9	15	100	0	58	24	0	0	75	0.80
15209273--15209662	29	13.2	29	69	16	157	34	23	5	36	1.77
15209273--15209521	30	8.4	30	74	10	194	33	26	4	35	1.78
15209292--15209520	89	2.6	88	82	10	277	34	26	4	34	1.78
15209584--15209644	30	2.0	30	83	0	77	36	16	4	42	1.70
15213538--15213567	15	1.9	16	93	6	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214863--15214961	11	8.9	11	79	13	98	40	0	3	56	1.15
15214861--15214944	5	15.6	5	78	18	80	41	0	2	55	1.12
15214863--15214961	43	2.2	45	85	8	132	40	0	3	56	1.15
15215141--15215194	28	1.9	28	81	7	65	16	46	12	24	1.82
15215630--15215659	15	2.0	15	93	0	51	60	3	0	36	1.14
15215639--15215722	3	26.7	3	71	9	51	55	1	1	41	1.15
15215652--15215723	16	4.7	15	73	14	67	54	1	1	43	1.17
15215662--15215722	19	3.3	18	71	24	56	55	0	1	42	1.09
15215980--15216010	16	1.9	16	93	0	53	16	22	19	41	1.89
15216078--15216124	20	2.3	20	82	10	60	70	4	19	6	1.26
15216812--15217147	29	11.6	29	68	23	183	33	29	2	34	1.71
15216810--15217152	58	5.9	59	86	4	455	32	30	2	34	1.72
15216810--15217174	115	3.1	116	83	5	463	32	29	3	34	1.73
15229283--15229813	76	7.0	76	92	3	878	33	15	18	32	1.92
15230577--15230635	28	2.2	26	77	11	64	42	27	8	22	1.82
15230898--15230927	15	2.0	15	93	0	51	60	3	0	36	1.14
15230920--15230986	13	4.9	14	73	15	61	53	1	1	43	1.19
15231247--15231277	16	1.9	16	93	0	53	16	22	19	41	1.89
15231345--15231391	20	2.3	20	82	10	60	70	4	19	6	1.26
15232065--15232466	59	6.9	59	90	3	616	32	30	2	34	1.72
15232065--15232466	117	3.4	118	92	2	641	32	30	2	34	1.72
15234301--15234334	10	3.5	10	92	8	61	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15234918--15234961	20	2.2	20	84	8	54	50	2	0	47	1.13
15236102--15236150	24	2.0	24	84	0	62	34	6	22	36	1.79
15244044--15244078	17	2.2	17	90	10	56	60	0	11	28	1.32
15246236--15246367	61	2.2	60	82	8	153	46	11	16	25	1.80
15246322--15246397	31	2.5	31	82	0	98	44	11	17	26	1.83
15246662--15246710	21	2.2	23	85	7	66	34	6	8	51	1.57
15247017--15247115	24	4.1	24	85	0	135	28	21	23	27	1.99
15247017--15247115	48	2.1	48	94	0	171	28	21	23	27	1.99
15250364--15250447	30	2.7	31	81	7	98	27	22	8	41	1.82
15251258--15251290	16	2.1	17	88	11	52	75	0	0	24	0.80
15251824--15252001	96	1.9	96	84	4	243	38	14	18	28	1.90
15252208--15252325	28	4.1	28	67	12	78	30	5	29	34	1.79
15252234--15252385	58	2.6	58	78	7	164	36	5	26	32	1.79
15252394--15252499	30	3.6	30	77	12	94	30	1	27	40	1.67
15253557--15253614	7	7.7	7	74	14	53	39	3	1	55	1.27
15253557--15253617	15	4.0	15	75	14	54	40	3	1	54	1.27
15253559--15253617	19	3.1	19	74	16	50	42	3	1	52	1.28
15254344--15254456	6	19.3	6	69	15	67	51	3	1	43	1.29
15254346--15254412	29	2.3	29	82	12	84	52	2	1	43	1.25
15254360--15254456	23	4.1	23	71	12	72	51	4	2	42	1.32
15254365--15254453	29	3.1	29	79	7	92	53	3	2	40	1.30
15254802--15256256	205	7.1	204	89	1	2097	21	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15256105--15256324	119	1.9	119	92	0	370	21	21	20	36	1.95
15256844--15256947	49	2.1	50	87	1	147	14	30	21	33	1.93
15256934--15257199	50	5.3	51	73	5	191	14	24	21	39	1.91
15256933--15257253	101	3.2	99	85	3	426	14	24	20	40	1.90
15256982--15257250	51	5.3	51	70	8	165	15	24	19	40	1.90
15257216--15257398	48	3.8	48	82	2	179	14	28	20	36	1.92
15258608--15258666	23	2.6	22	81	7	73	3	6	5	84	0.85
15259549--15259604	12	4.6	12	77	18	53	0	16	1	82	0.76
15259549--15259594	13	3.6	13	82	2	58	0	15	2	82	0.76
15259547--15259598	19	2.7	20	82	5	72	0	17	1	80	0.80
15263288--15263469	96	1.9	96	86	4	260	37	13	19	29	1.90
15263860--15264185	29	11.2	30	74	15	178	35	4	25	34	1.76
15263873--15264103	29	8.0	28	78	7	194	36	5	25	32	1.78
15263873--15264187	58	5.4	57	74	11	203	36	4	25	33	1.76
15263908--15264163	59	4.4	56	79	8	230	37	3	23	34	1.72
15263880--15264100	116	1.9	115	84	4	293	38	4	24	32	1.77
15263850--15264187	88	3.9	88	76	12	288	36	4	25	34	1.75
15265287--15265335	19	2.6	20	84	9	59	44	4	2	48	1.33
15266059--15266126	6	11.7	6	72	17	54	50	2	0	47	1.16
15266080--15266121	11	3.7	11	87	6	57	57	2	0	40	1.12
15266075--15266126	23	2.2	23	89	3	77	50	3	0	46	1.20
15266096--15266140	17	2.6	18	85	3	65	55	2	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15266075--15266134	23	2.6	23	84	7	59	53	3	1	41	1.27
15271609--15271656	24	2.0	24	91	0	78	18	35	2	43	1.62
15279164--15279195	16	2.0	16	100	0	64	37	31	12	18	1.88
15283532--15283557	4	6.5	4	100	0	52	0	26	0	73	0.84
15283555--15283580	2	13.0	2	100	0	52	0	50	0	50	1.00
15283675--15283723	2	24.5	2	100	0	98	0	48	0	51	1.00
15284971--15285000	3	10.0	3	92	0	51	63	0	36	0	0.95
15285809--15285875	23	2.9	23	88	0	107	5	22	19	52	1.67
15285795--15285867	23	3.1	23	86	2	92	5	26	19	49	1.69
15285807--15285883	23	3.3	23	85	0	100	7	24	19	48	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182