genome.fa.s9.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  175  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52955559--52955631	27	2.8	26	89	2	110	32	23	26	17	1.97
52955563--52955649	27	3.3	28	80	16	89	32	26	25	16	1.96
52955675--52955709	15	2.4	15	90	4	54	14	5	31	48	1.67
52955684--52955750	20	3.3	20	93	0	116	14	1	34	49	1.53
52955726--52955755	15	2.0	15	100	0	60	20	0	33	46	1.51
52962774--52962880	13	8.1	13	83	4	142	37	21	23	17	1.94
52962777--52962882	27	4.0	27	88	1	151	34	21	24	18	1.96
52962777--52962880	7	15.6	7	73	9	74	35	22	24	18	1.95
52962942--52962976	15	2.4	15	90	4	54	14	5	31	48	1.67
52962951--52963017	20	3.3	20	85	0	98	16	1	31	50	1.54
52962994--52963022	15	1.9	15	100	0	58	20	0	31	48	1.50
52968894--52968938	19	2.3	20	85	14	60	11	8	17	62	1.53
52981384--52981469	43	2.0	43	97	2	165	39	9	4	46	1.57
52989901--52989943	12	3.7	12	84	6	61	76	0	6	16	0.99
52989901--52989947	22	2.1	23	92	4	78	74	0	10	14	1.07
52989901--52989941	11	3.6	11	83	3	55	78	0	7	14	0.96
52997025--52997052	13	2.2	13	100	0	56	42	32	0	25	1.55
52997022--52997080	19	3.1	19	80	4	66	45	30	0	23	1.53
52997851--52998016	4	41.5	4	97	0	305	25	1	24	48	1.61
52999443--52999479	19	2.0	18	89	5	56	24	18	27	29	1.98
53000721--53000772	24	2.2	24	85	0	68	28	26	23	21	1.99
53000730--53000836	24	4.5	24	85	0	151	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53003247--53003278	3	10.7	3	93	0	55	0	28	0	71	0.86
53003578--53003629	24	2.1	26	85	7	72	67	0	0	32	0.91
53004884--53004910	2	13.5	2	100	0	54	0	48	0	51	1.00
53017675--53017714	20	2.1	19	86	13	55	5	15	5	75	1.15
53021391--53021430	2	20.0	2	100	0	80	50	0	0	50	1.00
53021858--53022127	43	6.3	43	87	0	371	24	19	27	28	1.99
53021858--53022127	128	2.1	128	90	2	425	24	19	27	28	1.99
53030074--53030105	15	2.0	17	88	11	50	3	6	3	87	0.73
53030324--53030366	16	2.7	15	82	17	52	37	0	0	62	0.95
53031278--53031314	15	2.3	17	86	9	51	54	0	27	18	1.44
53035575--53035611	3	12.0	3	88	5	56	35	62	0	2	1.10
53039562--53039615	21	2.5	20	77	11	54	25	3	11	59	1.48
53041362--53041431	29	2.4	29	81	9	72	40	4	7	48	1.50
53045942--53045976	18	1.9	18	88	11	54	51	0	5	42	1.25
53055668--53055706	19	2.1	19	95	0	69	74	2	5	17	1.12
53058898--53058924	2	13.5	2	100	0	54	0	48	0	51	1.00
53062934--53062983	14	3.6	14	76	23	52	30	0	0	70	0.88
53062938--53062976	20	1.9	21	84	5	53	33	0	0	66	0.92
53067507--53067666	81	2.0	81	94	0	284	50	6	10	33	1.62
53068391--53068447	17	3.4	17	73	9	55	31	1	1	64	1.13
53068384--53068456	8	8.6	9	69	24	52	31	1	1	65	1.09
53070872--53070939	26	2.6	26	82	11	77	30	1	4	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53078214--53078247	14	2.5	14	90	4	52	14	0	5	79	0.91
53078209--53078247	11	3.5	11	82	0	51	12	0	5	82	0.83
53078284--53078323	18	2.2	19	86	8	57	22	2	10	65	1.35
53079877--53080084	104	2.0	101	86	2	290	27	13	19	39	1.89
53088537--53088590	19	2.9	18	82	15	65	68	3	1	25	1.16
53091783--53091817	12	2.9	12	86	0	52	22	42	8	25	1.82
53092637--53092669	15	2.1	16	88	5	50	36	0	0	63	0.95
53093755--53093805	21	2.4	21	75	18	61	49	5	1	43	1.38
53096221--53096277	29	2.0	29	85	0	78	43	5	10	40	1.62
53097665--53097690	2	13.0	2	100	0	52	50	0	0	50	1.00
53098201--53098512	168	1.9	168	87	4	468	26	12	17	44	1.84
53099649--53099692	3	14.7	3	85	0	61	34	59	0	6	1.24
53099646--53099692	18	2.6	18	96	0	85	34	57	0	8	1.29
53103489--53103518	6	5.0	6	100	0	60	16	66	16	0	1.25
53113071--53113117	16	2.9	16	72	15	51	29	0	2	68	1.02
53113874--53113923	24	2.2	22	85	7	64	72	6	6	16	1.25
53115977--53116014	20	1.9	20	94	0	67	44	15	5	34	1.69
53119753--53119797	22	2.0	22	83	8	56	2	37	2	57	1.23
53123431--53123470	20	2.0	20	85	9	55	57	17	7	17	1.62
53126374--53126420	24	1.9	24	83	12	60	68	4	2	25	1.19
53127620--53127768	60	2.6	56	78	14	155	53	17	7	22	1.68
53130926--53131104	88	2.0	88	97	0	340	38	12	20	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53135035--53135079	3	15.3	3	86	13	67	2	28	0	68	1.01
53146184--53146231	13	3.5	13	76	20	53	35	0	6	58	1.23
53147528--53147585	25	2.3	25	100	0	116	44	12	10	32	1.75
53153438--53153774	180	1.8	183	86	5	495	24	15	16	43	1.86
53162823--53162881	19	3.2	19	76	9	68	57	0	0	42	0.98
53162823--53162881	20	3.2	19	79	15	70	57	0	0	42	0.98
53162837--53162899	28	2.2	28	83	8	74	58	3	0	38	1.14
53164923--53164960	12	2.9	13	84	11	51	47	13	0	39	1.42
53167593--53167617	2	12.5	2	100	0	50	48	0	0	52	1.00
53167631--53167683	26	2.0	26	100	0	106	58	7	0	33	1.26
53172368--53172399	15	2.1	15	94	0	55	40	12	31	15	1.85
53173396--53173852	114	4.1	113	79	12	475	45	21	9	24	1.81
53173642--53174041	100	4.1	99	77	11	342	42	23	10	23	1.86
53173745--53174008	90	2.8	88	81	7	249	40	24	10	23	1.87
53194187--53194235	24	2.0	24	100	0	98	24	12	4	59	1.50
53195937--53195984	23	2.1	24	84	7	64	47	2	2	47	1.25
53197457--53197518	32	2.0	31	84	9	81	6	8	29	56	1.53
53203286--53203343	30	1.9	30	92	0	98	41	0	1	56	1.09
53206308--53206337	15	2.0	15	93	0	51	33	30	0	36	1.58
53207038--53207062	9	2.8	9	100	0	50	8	0	0	92	0.40
53207818--53208375	267	2.1	268	83	4	705	39	12	10	36	1.78
53216831--53217524	290	2.4	295	86	4	940	27	11	20	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53218573--53218614	21	2.0	21	100	0	84	14	19	19	47	1.82
53223627--53223660	12	2.8	12	90	0	50	41	0	8	50	1.34
53228426--53228557	27	4.9	25	70	18	88	50	9	10	29	1.69
53228501--53228555	28	2.0	27	89	3	83	52	10	9	27	1.66
53230461--53230505	22	2.1	21	83	4	54	62	4	0	33	1.15
53239251--53239933	233	2.9	232	77	7	727	37	23	12	26	1.90
53239118--53239878	233	3.2	238	77	9	726	39	22	12	25	1.89
53243435--53243467	15	2.1	16	94	5	59	72	3	6	18	1.18
53243509--53243560	11	4.7	11	80	0	59	15	5	9	69	1.35
53244921--53245071	62	2.4	62	85	4	196	24	1	27	47	1.60
53245919--53245966	18	2.5	19	83	10	62	25	0	6	68	1.12
53252658--53252686	7	4.1	7	100	0	58	86	0	0	13	0.58
53255075--53255108	15	2.2	15	89	5	50	64	0	0	35	0.94
53271425--53271467	22	2.0	22	90	0	68	62	11	2	23	1.40
53272184--53272242	6	9.8	6	73	14	50	38	3	1	55	1.26
53272200--53272227	14	2.0	14	100	0	56	35	7	0	57	1.26
53273390--53273422	15	2.2	15	100	0	66	54	0	12	33	1.37
53274363--53274527	59	2.8	55	82	13	206	36	27	1	34	1.65
53274363--53274645	58	4.9	55	78	11	242	34	30	2	33	1.70
53274305--53274554	30	8.5	30	70	17	132	38	26	2	34	1.68
53274363--53274645	117	2.4	117	81	6	299	34	30	2	33	1.70
53282289--53282319	16	1.9	16	93	0	53	16	0	19	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53285920--53286261	171	2.0	170	89	1	515	28	25	16	30	1.96
53287758--53287841	42	2.0	42	100	0	168	33	16	21	28	1.95
53288721--53288796	17	4.6	16	81	15	93	42	1	2	53	1.23
53288721--53288798	6	14.0	6	71	20	62	43	1	2	52	1.23
53288721--53288797	11	7.0	11	72	11	59	42	1	2	53	1.23
53289901--53289939	17	2.4	17	86	4	53	69	7	10	12	1.37
53290656--53290958	60	5.1	60	83	4	371	37	21	1	39	1.62
53290643--53290957	30	10.6	29	77	9	278	37	20	1	40	1.62
53291207--53291260	27	2.0	27	82	13	67	9	14	14	61	1.57
53293304--53293346	22	1.9	23	85	4	61	20	6	0	72	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182