genome.fa.s9.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  47  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16488086--16488123	18	2.1	18	95	0	67	28	23	18	28	1.98
16488137--16488209	18	4.1	18	80	0	83	34	23	21	20	1.97
16488093--16488209	36	3.2	36	79	7	139	35	22	21	21	1.96
16495082--16495214	18	7.3	18	88	0	140	33	24	17	24	1.96
16495105--16495211	54	2.0	54	90	0	169	35	24	16	23	1.95
16495096--16495209	36	3.2	36	87	0	156	35	25	17	21	1.95
16497121--16497507	30	12.9	30	87	4	487	40	3	21	34	1.71
16497078--16497507	60	7.2	60	86	3	539	39	3	23	33	1.71
16497121--16497507	90	4.3	90	86	3	537	40	3	21	34	1.71
16497421--16497469	15	3.3	15	70	30	50	42	4	22	30	1.72
16497427--16497480	18	3.3	18	71	28	66	37	3	24	35	1.73
16499387--16499486	6	16.8	6	76	13	91	51	1	1	47	1.14
16499413--16499491	17	4.9	16	81	10	90	56	2	1	39	1.21
16499412--16499491	31	2.5	32	85	4	108	56	2	1	40	1.21
16499450--16499504	27	2.0	27	89	0	83	54	5	0	40	1.23
16499836--16500589	68	11.1	68	89	2	1090	28	20	16	34	1.95
16499836--16500588	336	2.2	336	92	2	1260	28	20	16	34	1.95
16512457--16512869	30	13.6	30	81	8	428	36	2	25	36	1.68
16512457--16512874	60	6.9	60	83	8	472	35	2	25	36	1.69
16512545--16512826	98	3.0	98	83	9	393	36	1	24	37	1.63
16512640--16512874	119	2.0	120	88	4	359	37	2	23	36	1.69
16514503--16514533	16	1.9	16	93	0	53	12	6	58	22	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16514719--16514818	6	16.8	6	76	13	91	51	1	1	47	1.14
16514745--16514823	17	4.9	16	81	10	90	56	2	1	39	1.21
16514744--16514823	31	2.5	32	85	4	108	56	2	1	40	1.21
16514782--16514836	27	2.0	27	89	0	83	54	5	0	40	1.23
16515301--16515340	21	1.9	21	85	10	55	25	17	15	42	1.88
16517512--16517551	21	2.0	20	90	5	62	5	15	10	70	1.32
16518062--16518125	29	2.2	29	97	0	119	14	23	40	21	1.90
16518850--16518887	6	6.3	6	87	0	58	21	2	13	63	1.42
16518874--16518922	16	2.9	17	79	8	57	20	12	16	51	1.76
16520537--16520595	29	2.0	30	86	3	84	30	6	13	49	1.68
16524260--16524307	25	2.0	23	84	8	60	43	2	0	54	1.12
16525080--16525119	20	2.0	21	85	14	57	40	2	2	55	1.27
16527191--16527292	27	3.8	26	82	7	116	28	19	24	27	1.99
16528346--16528393	22	2.2	22	81	7	53	54	8	6	31	1.55
16528881--16528927	25	1.9	24	82	4	58	23	2	8	65	1.31
16537316--16537358	21	2.0	21	86	8	61	41	0	0	58	0.98
16548649--16548689	21	1.9	22	85	14	59	14	7	9	68	1.39
16548953--16548987	12	3.0	12	87	4	54	68	0	0	31	0.90
16556922--16557140	41	5.3	41	88	1	294	38	11	24	25	1.89
16556922--16557178	82	3.1	82	84	2	320	38	11	24	25	1.89
16556922--16557178	41	6.2	41	84	5	279	38	11	24	25	1.89
16556920--16557148	123	1.9	123	89	2	352	37	12	23	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16558804--16558864	19	3.6	19	67	28	55	24	22	18	34	1.96
16574981--16575027	2	24.0	2	95	4	87	0	51	0	48	1.00
16581083--16581112	6	5.0	6	91	0	51	0	13	16	70	1.18
16581083--16581116	18	1.9	17	94	5	59	0	11	14	73	1.10
16581913--16581937	13	1.9	13	100	0	50	44	8	8	40	1.63
16586758--16586816	29	2.0	29	83	12	75	50	13	1	33	1.52
16587985--16588046	21	3.1	19	76	15	63	50	1	3	45	1.27
16590215--16590241	6	4.5	6	100	0	54	18	0	0	81	0.69
16597907--16597955	22	2.2	22	92	0	80	46	14	16	22	1.82
16601250--16601308	28	2.1	28	93	6	102	57	10	0	32	1.32
16601949--16601975	5	5.4	5	100	0	54	81	0	0	18	0.69
16607830--16607940	43	2.6	42	84	7	134	41	20	16	21	1.90
16607866--16607958	43	2.2	43	86	3	125	44	19	15	21	1.87
16608601--16608640	16	2.4	18	80	12	50	42	7	5	45	1.54
16610030--16610227	99	2.0	98	95	1	351	36	13	18	31	1.89
16610971--16611027	20	2.8	21	77	17	57	68	3	0	28	1.06
16610971--16611027	21	2.8	20	76	12	53	68	3	0	28	1.06
16610980--16611055	20	3.8	19	75	11	64	67	5	2	25	1.25
16611481--16612422	467	2.0	467	97	0	1794	30	24	16	28	1.97
16616855--16616895	21	2.0	20	85	9	55	56	4	0	39	1.21
16616851--16616900	20	2.6	18	74	20	55	52	4	0	44	1.20
16622518--16622725	104	2.0	104	99	0	407	33	22	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16627876--16627998	64	1.9	63	88	1	183	33	8	9	47	1.68
16628353--16628388	16	2.2	16	90	0	54	27	0	0	72	0.85
16631182--16631218	3	12.0	3	88	5	56	64	0	0	35	0.94
16631504--16631566	24	2.5	24	77	10	65	28	1	9	60	1.37
16631761--16631924	58	2.7	60	74	13	158	26	17	11	44	1.82
16632071--16632230	55	2.8	57	78	5	171	49	10	15	25	1.75
16637340--16638127	261	3.0	261	96	0	1459	35	17	16	31	1.92
16647857--16647899	21	2.0	22	90	4	70	48	0	0	51	1.00
16654457--16654491	3	11.7	3	100	0	70	31	0	0	68	0.90
16669722--16669762	16	2.6	16	75	24	50	36	0	0	63	0.95
16669953--16669992	15	2.6	15	88	4	62	35	2	0	62	1.09
16672002--16672031	15	1.9	16	93	6	53	20	13	0	66	1.24
16671997--16672057	22	2.8	22	85	7	63	16	11	1	70	1.24
16672011--16672057	22	2.2	22	92	3	78	17	8	2	72	1.19
16673365--16673414	21	2.4	21	86	0	64	44	14	14	28	1.83
16673376--16673415	21	1.9	21	94	0	71	42	12	17	27	1.85
16675416--16675608	105	1.9	103	81	6	237	38	12	23	25	1.90
16678049--16678094	24	1.9	23	86	8	65	56	4	4	34	1.39
16687200--16688228	513	2.0	512	98	0	2004	35	22	16	26	1.94
16694011--16694040	15	2.0	15	93	0	51	23	0	3	73	0.98
16694052--16694109	24	2.5	24	85	2	82	27	13	17	41	1.87
16703857--16703896	15	2.6	16	84	4	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16706030--16706068	14	2.8	14	100	0	78	79	0	0	20	0.73
16706701--16706739	11	3.5	11	85	0	51	66	5	2	25	1.25
16706696--16706739	22	2.0	23	86	4	63	65	4	4	25	1.30
16707318--16707357	15	2.6	16	88	4	55	57	7	0	35	1.27
16707396--16707444	23	2.2	22	88	3	71	67	4	6	22	1.30
16714553--16714591	16	2.6	16	84	8	55	64	0	0	35	0.94
16714979--16715012	17	2.0	17	94	0	59	44	0	2	52	1.16
16717778--16717819	6	7.0	6	88	0	57	19	21	30	28	1.97
16717775--16717819	18	2.5	18	85	0	63	17	24	31	26	1.97
16721338--16721403	27	2.5	26	78	7	78	25	37	21	15	1.92
16721700--16721763	32	2.0	31	85	8	85	23	0	9	67	1.20
16721812--16721865	27	2.0	27	85	0	72	24	31	24	20	1.98
16745843--16745921	20	3.8	20	69	16	54	60	1	3	34	1.23
16745891--16745963	17	4.1	17	73	20	60	63	1	1	34	1.12
16745891--16745970	10	8.5	10	74	13	64	62	1	1	35	1.11
16745871--16745933	20	3.0	22	70	15	60	58	1	4	34	1.29
16746149--16746240	38	2.4	38	78	7	96	29	4	3	63	1.30
16746194--16746240	21	2.3	20	85	10	60	27	2	2	68	1.13
16746194--16746240	20	2.3	21	82	17	55	27	2	2	68	1.13
16750223--16750287	20	3.2	20	82	6	78	43	23	16	16	1.88
16750288--16750332	21	2.2	20	84	4	54	28	33	22	15	1.95
16750369--16750398	15	2.0	15	93	0	51	20	3	33	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16750382--16750449	21	3.2	21	93	2	118	23	0	32	44	1.54
16750820--16750894	11	6.5	11	73	14	62	69	0	25	5	1.09
16750820--16750892	23	3.1	23	75	11	67	69	0	24	5	1.09
16757332--16757380	20	2.4	20	96	3	89	38	24	22	14	1.91
16757335--16757380	7	6.7	7	87	5	67	34	26	23	15	1.94
16757367--16757425	21	2.8	20	82	2	55	30	32	22	15	1.94
16757462--16757491	15	2.0	15	93	0	51	20	3	33	43	1.68
16757475--16757542	21	3.2	21	93	2	118	23	0	32	44	1.54
16757913--16757987	11	6.5	11	73	14	62	69	0	25	5	1.09
16757913--16757985	23	3.1	23	75	11	67	69	0	24	5	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182