genome.fa.s9.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  113  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36821940--36822008	21	3.3	21	86	8	79	28	15	26	28	1.96
36821957--36822011	21	2.6	21	91	0	83	29	18	21	30	1.97
36822831--36822978	47	3.2	47	77	13	137	25	10	14	50	1.73
36824847--36824890	15	2.7	16	82	13	54	65	0	0	34	0.93
36826026--36826109	41	2.0	41	100	0	168	42	9	21	26	1.83
36827668--36827735	28	2.4	28	72	0	73	60	0	10	29	1.30
36827689--36828049	116	3.0	120	95	4	653	58	0	9	32	1.30
36832642--36832758	36	3.0	36	71	21	94	35	3	0	60	1.19
36832818--36832997	87	2.1	84	84	4	236	33	8	19	38	1.82
36833332--36833398	34	2.0	34	85	5	91	32	4	8	53	1.52
36833373--36833407	17	2.1	17	88	0	52	45	2	0	51	1.16
36834226--36834282	3	18.3	3	85	7	78	63	0	1	35	1.05
36835298--36835418	30	4.1	28	81	12	136	38	24	1	34	1.66
36835301--36835418	59	2.0	60	83	8	152	39	22	1	35	1.65
36835399--36835677	58	4.7	58	69	11	176	33	26	5	34	1.79
36835319--36835548	116	2.0	117	86	2	329	36	24	4	34	1.77
36835337--36835607	117	2.3	117	82	5	316	34	23	5	35	1.79
36840383--36840428	23	2.0	23	95	0	83	45	4	15	34	1.66
36845766--36845794	6	4.8	6	100	0	58	0	65	0	34	0.93
36846363--36846403	13	3.2	13	85	0	55	12	19	26	41	1.87
36853445--36853480	7	5.1	7	86	0	54	16	27	25	30	1.97
36862186--36862258	22	3.4	22	70	14	71	53	6	5	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36869506--36869777	29	9.3	29	76	10	184	34	2	25	36	1.71
36869513--36869774	58	4.5	58	79	11	243	35	2	24	37	1.70
36869513--36869778	88	3.0	87	83	9	285	34	2	25	36	1.70
36878432--36878473	22	1.9	22	81	18	52	71	7	0	21	1.09
36878493--36878537	23	2.0	23	86	8	65	51	0	2	46	1.13
36878560--36878599	11	3.8	11	83	12	57	50	5	0	45	1.23
36878559--36878605	20	2.4	20	96	3	87	53	4	0	42	1.20
36878952--36878994	18	2.3	19	84	4	52	27	0	9	62	1.25
36890817--36891056	85	2.7	86	78	8	252	37	16	10	35	1.82
36891191--36891285	19	4.8	20	71	11	72	55	2	2	40	1.23
36891227--36891283	20	2.9	20	82	7	64	49	1	3	45	1.29
36891484--36891564	29	2.8	28	76	12	83	29	4	2	62	1.29
36891461--36891630	19	8.8	19	68	15	73	33	3	2	60	1.26
36891513--36891624	60	1.9	59	83	9	147	37	1	3	57	1.27
36891634--36891688	28	2.0	28	89	3	85	43	1	3	50	1.30
36891671--36891700	8	3.9	8	95	4	53	53	0	0	46	1.00
36891791--36892037	88	2.8	86	77	11	268	34	8	18	39	1.80
36893267--36893434	72	2.3	72	82	1	210	27	20	28	23	1.99
36893613--36893766	39	4.0	39	81	2	143	44	21	11	23	1.84
36893633--36893793	39	4.1	39	80	0	169	43	19	13	23	1.86
36895554--36895593	21	1.9	21	89	0	62	22	17	30	30	1.97
36895553--36895599	21	2.2	20	82	10	58	23	14	34	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36896235--36896290	24	2.3	24	84	0	85	35	7	8	48	1.62
36896883--36897019	71	1.9	71	84	0	184	16	4	39	39	1.69
36897166--36897269	53	2.0	53	98	0	199	7	20	11	60	1.55
36897184--36897265	24	3.2	24	67	26	69	6	18	10	64	1.45
36898848--36898954	6	16.5	6	69	13	52	17	0	46	34	1.55
36898897--36898962	14	4.9	14	80	9	66	18	0	40	40	1.50
36898908--36898966	21	2.8	20	82	14	66	16	0	44	38	1.48
36899560--36899747	39	4.8	39	82	1	171	41	20	13	24	1.88
36899573--36899748	78	2.3	78	82	0	208	40	20	14	24	1.89
36906669--36906712	23	2.0	21	83	12	54	43	20	20	15	1.88
36906596--36906748	79	1.9	79	86	5	220	32	18	22	27	1.97
36908133--36908163	2	15.5	2	93	0	53	48	0	3	48	1.17
36909398--36909487	42	2.1	42	93	0	153	30	4	27	37	1.76
36915529--36915687	87	1.8	86	83	4	212	27	12	21	38	1.90
36918277--36918373	12	8.3	12	72	13	69	8	4	18	69	1.31
36918277--36918396	44	2.7	45	80	10	124	10	4	17	68	1.34
36919366--36919425	22	2.8	22	80	9	63	28	38	18	15	1.91
36919735--36919775	22	1.9	22	85	14	59	31	9	0	58	1.31
36922243--36922299	29	2.0	29	92	0	96	49	10	1	38	1.48
36927652--36927769	29	4.3	29	77	14	133	48	8	2	40	1.47
36927672--36927769	51	1.9	51	91	0	160	48	9	2	39	1.46
36931663--36931711	6	8.3	6	77	4	55	59	0	22	18	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36940093--36940302	29	7.1	30	79	10	202	36	0	24	37	1.62
36940088--36940302	59	3.7	59	83	6	267	35	0	26	37	1.63
36940100--36940352	29	8.6	29	77	8	145	35	1	23	39	1.66
36941073--36941753	203	3.3	203	82	4	770	22	22	19	35	1.96
36941625--36941874	121	2.1	116	83	6	297	20	22	22	34	1.96
36941741--36942317	205	2.8	204	88	2	838	21	23	21	33	1.97
36941205--36942613	527	2.6	527	87	5	1898	21	22	20	34	1.96
36942141--36942478	158	2.2	156	85	2	439	22	21	21	34	1.96
36941936--36942613	359	1.9	358	90	0	1079	21	22	20	34	1.97
36942992--36943156	49	3.3	49	73	16	142	13	24	18	43	1.87
36944370--36944515	24	5.9	24	79	13	129	2	19	0	78	0.84
36944387--36944528	46	3.0	47	77	14	134	0	19	0	80	0.76
36944372--36944526	52	3.0	51	82	15	180	1	18	0	79	0.83
36944368--36944528	66	2.4	66	82	14	186	1	18	0	79	0.82
36944369--36944528	12	12.8	12	72	10	108	1	18	0	80	0.81
36949634--36949828	29	6.7	29	77	12	168	37	2	22	37	1.66
36949633--36949828	59	3.4	59	82	9	242	37	2	22	37	1.66
36951755--36951831	24	3.0	24	79	7	73	49	5	1	44	1.33
36951806--36951862	17	3.4	17	83	16	82	52	0	1	45	1.11
36954987--36955151	43	3.8	44	80	5	158	35	11	19	33	1.88
36957117--36957167	20	2.6	19	84	9	66	49	15	3	31	1.63
36959560--36959705	60	2.5	60	91	1	240	24	19	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36959620--36959802	95	1.9	96	92	1	305	25	19	13	42	1.87
36959715--36959907	60	3.2	61	88	2	282	24	19	11	44	1.84
36959549--36959862	155	2.0	155	99	0	619	26	19	12	42	1.86
36960439--36960515	30	2.7	28	77	18	86	48	9	2	40	1.49
36961184--36961208	3	8.3	3	100	0	50	68	0	0	32	0.90
36961249--36961344	46	2.1	46	94	0	165	40	20	8	30	1.82
36961289--36961403	59	1.9	59	91	0	185	40	18	10	30	1.84
36961389--36961425	19	1.9	19	88	0	56	43	21	5	29	1.75
36962378--36962404	14	1.9	14	100	0	54	51	29	3	14	1.60
36966961--36967144	43	4.3	43	86	2	253	24	18	29	27	1.98
36968374--36968402	11	2.5	12	94	5	51	10	6	0	82	0.83
36968872--36968928	20	3.0	20	74	23	59	50	0	1	47	1.11
36968881--36968953	29	2.4	31	93	4	123	52	0	1	46	1.09
36968881--36968960	30	2.7	29	83	9	99	50	0	1	48	1.08
36969922--36970001	29	2.7	28	84	9	97	50	2	0	47	1.14
36969932--36970001	29	2.3	31	90	4	108	48	2	0	48	1.16
36972271--36972299	15	1.9	15	100	0	58	20	20	17	41	1.90
36977914--36978072	80	2.0	80	100	0	318	50	17	8	23	1.73
36977924--36978051	38	3.3	38	66	17	109	50	17	8	23	1.73
36985876--36986189	155	2.1	149	88	5	463	35	7	10	46	1.67
36987328--36987412	43	2.0	43	83	4	109	30	12	12	43	1.81
36988005--36988050	21	2.2	21	88	0	65	23	32	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36988292--36988424	14	9.3	14	70	11	90	48	21	0	29	1.56
36988327--36988430	28	3.6	29	78	8	113	50	19	0	28	1.53
36990326--36990386	27	2.3	27	97	2	115	24	29	18	27	1.98
37004858--37004889	16	1.9	17	93	6	57	21	3	25	50	1.64
37011767--37011806	21	1.9	21	94	0	71	22	12	12	52	1.72
37013121--37013219	47	2.1	48	83	9	123	22	22	16	39	1.92
37013261--37013507	58	4.2	58	77	9	225	19	23	23	33	1.97
37013261--37013507	116	2.1	116	84	5	311	19	23	23	33	1.97
37019945--37019974	14	2.1	14	93	0	51	40	10	0	50	1.36
37037825--37037850	11	2.4	11	100	0	52	15	7	7	69	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182