genome.fa.s9.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  108  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35133625--35133821	53	3.9	51	79	10	171	20	17	33	28	1.95
35133733--35133886	84	1.9	82	81	8	186	19	14	35	30	1.91
35134614--35134698	29	2.9	29	87	0	116	25	15	11	47	1.79
35136846--35136910	30	2.2	30	86	5	87	44	0	1	53	1.09
35137604--35137656	16	3.2	16	72	15	54	45	1	3	49	1.31
35137594--35137656	33	1.9	33	90	0	99	41	3	6	49	1.44
35137602--35137687	31	2.7	32	85	10	106	41	1	3	53	1.25
35137957--35137991	6	5.8	6	100	0	70	48	17	17	17	1.81
35138884--35138920	17	2.2	16	90	9	56	64	0	2	32	1.07
35138884--35138921	18	2.2	17	90	4	58	65	0	2	31	1.06
35138953--35139008	23	2.6	23	86	8	64	37	1	7	53	1.39
35138980--35139010	15	2.1	15	93	0	53	38	0	6	54	1.26
35139135--35139182	21	2.3	20	86	10	62	20	2	8	68	1.26
35139150--35139199	20	2.5	20	83	9	57	24	6	2	68	1.23
35147342--35147387	24	1.9	24	82	8	58	47	2	10	39	1.51
35150766--35150935	85	2.0	85	96	0	313	32	15	18	32	1.92
35156033--35156060	14	2.0	14	100	0	56	14	7	0	78	0.95
35172623--35172713	47	2.0	46	97	2	173	41	13	9	35	1.77
35172800--35173001	101	2.0	101	85	6	273	48	9	7	34	1.66
35177003--35177196	97	2.0	98	83	5	250	38	14	16	30	1.88
35177432--35177592	29	5.5	28	71	14	94	33	5	24	36	1.79
35177423--35177605	58	3.1	58	77	7	174	32	7	26	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35177490--35177782	30	9.9	28	75	13	191	33	2	27	37	1.70
35177460--35177739	29	9.6	29	73	13	139	33	3	26	36	1.75
35177490--35177679	88	2.2	88	79	10	194	33	2	26	36	1.71
35177578--35177814	60	4.0	59	79	9	180	32	2	27	37	1.70
35177618--35177813	30	6.6	29	76	12	143	31	1	28	38	1.66
35178521--35178610	27	3.3	27	69	18	71	28	10	3	57	1.47
35178540--35178624	27	3.2	26	71	15	75	21	15	2	61	1.45
35178800--35178854	26	2.1	26	90	6	85	36	0	1	61	1.06
35178805--35178866	26	2.3	27	83	8	74	37	3	1	58	1.24
35179353--35179401	23	2.0	26	88	11	77	16	2	32	48	1.57
35179468--35179530	17	3.6	18	78	6	58	52	4	1	41	1.32
35179466--35179544	23	3.5	22	77	6	61	51	3	1	43	1.27
35179485--35179536	6	8.8	6	85	4	61	53	3	0	42	1.19
35191489--35191546	3	19.0	3	75	3	53	32	5	3	58	1.37
35191952--35192455	145	3.4	145	83	9	576	40	3	10	45	1.54
35199693--35199723	9	3.4	9	100	0	62	45	0	35	19	1.51
35203910--35203954	20	2.2	20	88	0	63	28	4	13	53	1.59
35220206--35220678	49	9.6	49	71	11	277	38	16	25	18	1.92
35220212--35220699	99	4.9	99	85	1	541	39	16	25	18	1.92
35223989--35224031	20	2.0	22	86	8	63	44	2	2	51	1.27
35224234--35224273	18	2.3	18	86	4	55	47	2	10	40	1.50
35224950--35225043	30	3.2	30	81	17	108	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35224947--35225021	28	2.6	27	85	14	98	48	0	1	50	1.09
35224950--35225038	28	3.1	28	71	20	76	50	0	2	47	1.13
35224964--35225050	28	3.0	28	76	15	88	51	0	1	47	1.08
35226637--35226692	24	2.3	24	87	0	76	48	10	5	35	1.61
35226711--35226782	36	2.0	35	89	2	108	27	15	13	43	1.85
35226819--35226877	29	2.0	29	87	6	84	37	33	8	20	1.83
35231578--35231607	6	5.0	6	95	0	51	16	33	13	36	1.88
35234738--35234768	3	10.3	3	100	0	62	35	0	0	64	0.94
35235187--35235835	146	4.4	146	87	4	866	43	3	8	44	1.51
35235266--35235674	51	8.3	50	65	20	123	43	3	7	45	1.49
35235533--35235592	22	2.6	22	74	10	59	51	0	5	43	1.23
35235744--35235789	20	2.3	20	84	0	56	43	2	6	47	1.41
35245018--35245046	10	2.9	10	100	0	58	17	20	20	41	1.90
35249764--35249812	22	2.2	22	92	0	80	42	42	8	6	1.59
35249994--35250057	28	2.3	28	86	5	94	26	21	20	31	1.98
35250067--35250104	20	1.9	20	100	0	76	10	15	26	47	1.78
35249998--35250079	7	11.7	7	76	0	56	23	18	23	35	1.96
35251491--35251532	19	2.2	19	87	8	59	57	2	2	38	1.25
35257175--35257252	28	2.8	28	84	7	104	28	21	19	30	1.97
35257255--35257292	20	1.9	20	94	0	67	13	13	26	47	1.79
35257147--35257266	7	17.6	7	75	5	75	23	21	21	33	1.97
35264018--35264157	58	2.4	58	82	4	176	39	20	6	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35264080--35264189	32	3.3	32	70	22	100	36	19	7	37	1.79
35264112--35264225	36	3.3	36	70	22	116	36	19	5	38	1.74
35264076--35264225	68	2.2	68	93	0	264	37	19	6	37	1.76
35264120--35264158	10	3.8	10	82	3	51	35	20	5	38	1.75
35264222--35264308	23	3.8	23	87	1	122	48	13	5	32	1.66
35264702--35264788	36	2.4	36	78	0	93	33	21	9	35	1.85
35275781--35275822	17	2.4	17	88	4	57	21	28	2	47	1.63
35275761--35275808	24	2.0	24	83	0	60	18	35	2	43	1.62
35276782--35276855	29	2.4	30	80	8	78	54	0	0	45	1.00
35277696--35277747	23	2.2	24	89	6	88	30	19	13	36	1.90
35286743--35286956	108	2.0	109	85	0	295	40	14	12	33	1.83
35287203--35287247	22	2.0	23	86	4	65	66	4	2	26	1.22
35287289--35287360	18	3.9	18	66	20	51	76	0	4	19	0.95
35287383--35287861	81	5.9	81	91	0	735	25	16	27	29	1.97
35296509--35296556	24	2.0	24	83	0	60	77	0	14	8	0.99
35316807--35316883	21	3.7	21	79	6	86	38	19	9	32	1.83
35328312--35328344	17	1.9	17	88	11	50	66	0	33	0	0.92
35329311--35329353	17	2.5	17	81	7	52	20	11	11	55	1.66
35332556--35332626	35	2.0	35	100	0	142	29	11	19	39	1.87
35332699--35332758	17	3.6	17	79	2	68	46	11	20	21	1.82
35340633--35340688	23	2.4	23	82	5	60	67	7	8	16	1.39
35341465--35341557	48	1.9	48	100	0	186	20	31	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35346063--35346110	24	2.0	24	100	0	96	37	25	20	16	1.93
35361092--35361144	18	2.9	18	74	0	52	45	20	11	22	1.83
35367639--35367678	21	1.9	21	85	10	55	67	0	27	5	1.11
35367648--35367686	18	2.1	19	85	4	53	69	2	23	5	1.21
35367788--35367841	18	3.1	18	83	5	65	22	11	9	57	1.61
35367788--35367841	17	3.1	17	86	2	63	22	11	9	57	1.61
35368434--35368465	17	1.9	17	93	6	57	78	6	15	0	0.95
35368459--35368492	16	2.1	17	88	5	52	44	5	11	38	1.65
35370952--35370996	16	2.5	19	75	20	60	33	11	20	35	1.88
35390455--35390500	22	2.1	22	100	0	92	41	4	17	36	1.69
35402527--35402734	93	2.2	93	79	5	224	22	16	12	48	1.80
35402935--35402984	25	2.0	25	88	0	73	30	12	20	38	1.88
35406245--35406280	19	2.0	18	89	10	56	44	0	0	55	0.99
35418630--35418777	28	5.2	28	71	13	106	35	25	14	24	1.94
35418601--35418778	56	3.2	57	87	3	254	35	25	15	23	1.94
35433257--35433868	207	3.0	207	96	0	1134	36	17	12	33	1.88
35436574--35436727	55	2.8	54	84	3	166	21	19	35	24	1.96
35436635--35436920	96	3.0	95	84	6	321	17	18	38	25	1.93
35436786--35436867	41	2.0	41	82	0	101	15	15	42	25	1.87
35436827--35436928	53	1.9	53	83	0	132	17	14	35	32	1.91
35436832--35436954	53	2.3	53	78	0	129	18	14	36	30	1.91
35437535--35437616	29	2.8	29	76	10	87	26	19	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35437608--35437650	17	2.5	17	88	7	61	18	25	16	39	1.91
35439329--35439357	2	14.5	2	100	0	58	51	0	48	0	1.00
35440199--35440259	28	2.1	29	96	3	115	62	13	0	24	1.31
35440199--35440268	28	2.5	28	90	4	97	61	14	0	24	1.33
35442549--35442766	119	1.8	119	87	0	328	28	15	25	30	1.96
35444932--35444972	22	1.9	22	85	5	57	29	4	0	65	1.13
35446546--35446604	25	2.4	25	88	0	82	35	20	18	25	1.95
35446559--35446611	25	2.1	25	85	0	70	32	20	18	28	1.97
35455898--35455958	18	3.6	18	70	20	58	22	21	34	21	1.97
35455900--35455967	33	2.1	33	94	0	118	20	22	36	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182