genome.fa.s9.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  130  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41130458--41130539	11	7.3	11	73	13	51	8	12	1	78	1.03
41131458--41131495	6	6.7	6	93	6	62	73	10	0	15	1.09
41131453--41131495	16	2.6	16	89	10	61	74	9	0	16	1.06
41131453--41131517	22	3.0	23	87	10	86	72	7	1	18	1.17
41135254--41135312	31	1.9	31	100	0	118	27	35	13	23	1.92
41138282--41138314	13	2.6	13	85	4	50	57	12	0	30	1.35
41143073--41143654	289	2.0	289	97	0	1103	31	23	15	29	1.95
41149222--41149343	6	21.0	6	70	12	76	45	2	2	50	1.28
41149198--41149290	24	3.7	25	74	20	77	41	3	2	52	1.29
41149222--41149307	41	2.1	41	88	0	109	41	3	1	53	1.25
41149222--41149337	17	6.4	17	75	16	99	43	2	2	50	1.29
41151155--41151464	29	10.5	28	68	19	125	33	29	3	33	1.74
41151437--41151497	28	2.1	28	81	3	68	24	39	8	27	1.84
41151154--41151470	59	5.4	59	87	1	422	33	30	3	32	1.75
41151451--41151510	28	2.1	28	84	0	75	28	31	11	28	1.92
41163399--41163631	75	3.0	76	89	2	351	33	17	18	31	1.94
41163059--41163822	245	3.1	244	92	3	1187	34	17	17	30	1.93
41163485--41163797	168	1.9	166	91	2	511	34	15	17	31	1.92
41163666--41163793	38	3.3	39	70	15	131	35	11	18	33	1.87
41163705--41163822	38	3.1	38	68	13	116	35	16	15	33	1.90
41163645--41163822	76	2.3	77	95	0	322	33	17	15	33	1.92
41164214--41164301	41	2.1	41	80	0	95	43	3	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41164233--41164333	6	17.2	6	73	11	84	41	2	1	53	1.27
41164233--41164333	17	5.4	17	76	17	85	41	2	1	53	1.27
41164233--41164318	41	2.1	41	91	0	136	41	3	0	54	1.17
41164268--41164350	17	4.8	16	79	18	78	43	1	2	53	1.21
41164268--41164351	35	2.4	35	84	7	100	42	1	2	53	1.21
41166139--41166385	29	8.5	28	69	17	132	34	28	2	34	1.72
41166139--41166392	58	4.4	59	86	4	354	33	29	3	33	1.73
41167634--41167685	26	2.0	26	88	0	77	48	11	9	30	1.72
41172652--41172692	22	1.9	21	90	5	64	9	0	12	78	0.98
41172656--41172703	22	2.2	22	84	0	60	10	4	8	77	1.12
41172841--41172865	9	2.8	9	100	0	50	32	0	0	68	0.90
41178088--41178121	16	2.1	16	88	5	50	23	0	5	70	1.09
41178989--41179043	16	3.4	16	73	9	58	54	1	1	41	1.21
41178990--41179079	32	2.6	34	84	6	112	53	5	2	38	1.37
41179060--41179108	20	2.7	18	77	22	57	51	2	2	44	1.24
41180718--41180744	6	4.5	6	100	0	54	18	51	0	29	1.46
41183611--41183643	17	1.9	17	93	0	57	54	0	21	24	1.45
41187663--41187700	3	12.7	3	100	0	76	34	0	0	65	0.93
41188523--41188583	26	2.4	25	74	17	61	40	13	0	45	1.43
41188536--41188606	27	2.6	28	82	8	76	43	9	0	46	1.37
41192886--41193070	59	3.2	57	81	6	187	23	15	12	48	1.80
41193275--41193408	31	4.5	31	73	11	104	47	11	14	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41193780--41193826	17	2.6	18	83	12	53	61	2	0	36	1.08
41202592--41202660	35	2.0	35	91	0	111	40	11	7	40	1.69
41203154--41203320	59	2.9	57	81	8	187	22	14	12	49	1.77
41203545--41203622	30	2.6	30	85	2	104	46	10	15	28	1.78
41203490--41203677	87	2.1	88	79	12	192	49	12	12	25	1.76
41205109--41205148	18	2.2	18	90	0	62	42	0	2	55	1.13
41205974--41206141	60	2.9	58	85	6	205	23	14	13	48	1.79
41206362--41206440	32	2.5	31	79	4	88	48	10	15	26	1.76
41206312--41206440	32	4.3	31	66	14	81	46	13	15	24	1.81
41206634--41206668	17	2.1	17	100	0	70	17	0	17	65	1.27
41211197--41211249	25	2.1	25	82	10	63	37	0	0	62	0.96
41211196--41211249	8	6.2	9	75	14	51	37	0	0	62	0.95
41213335--41213451	50	2.4	49	81	7	123	55	3	0	40	1.22
41213335--41213450	49	2.4	47	76	11	108	55	3	0	40	1.23
41215204--41215255	19	2.5	22	78	18	65	51	1	0	46	1.12
41216627--41216673	3	16.0	3	95	4	87	65	0	0	34	0.93
41216959--41216993	17	2.1	17	89	10	54	65	5	0	28	1.15
41217433--41217473	16	2.5	17	84	8	57	70	7	0	21	1.11
41217905--41218035	69	1.9	69	96	0	244	24	22	21	32	1.98
41222466--41222528	24	2.7	23	87	2	81	25	11	19	44	1.83
41222466--41222535	23	3.0	23	85	2	77	27	10	18	44	1.81
41224908--41224985	30	2.6	29	86	9	104	38	24	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41224991--41225220	60	3.8	59	78	10	211	36	24	3	35	1.74
41224991--41225211	30	7.4	29	79	13	173	35	23	4	36	1.74
41234234--41234408	49	3.6	49	75	7	165	36	14	30	18	1.92
41234762--41236131	78	17.6	78	74	8	545	25	28	18	27	1.98
41235201--41235316	40	3.0	38	71	10	117	24	24	20	31	1.98
41235297--41235400	38	2.7	37	76	8	102	25	37	13	23	1.91
41234900--41235553	233	2.8	233	81	4	669	25	29	18	27	1.98
41235208--41235680	116	4.1	116	72	11	356	24	27	20	27	1.99
41235208--41235742	116	4.6	114	71	13	338	24	28	19	26	1.99
41234879--41236095	39	31.4	39	67	9	320	25	28	18	27	1.98
41235791--41236095	155	2.0	156	86	3	427	27	28	17	26	1.98
41235456--41236095	272	2.4	272	79	2	712	25	28	19	26	1.98
41235804--41236167	155	2.3	153	79	6	383	27	28	16	27	1.97
41235804--41236192	156	2.5	153	79	4	386	28	27	17	26	1.97
41236159--41236309	39	3.9	39	86	0	194	31	23	17	27	1.96
41236126--41236312	78	2.4	77	82	1	203	31	23	17	27	1.97
41236159--41236313	78	2.0	78	88	0	229	31	23	16	27	1.96
41237505--41237538	15	2.3	15	90	10	52	58	0	5	35	1.22
41238149--41238269	60	2.0	59	81	10	140	36	23	3	36	1.72
41238214--41238297	30	2.8	30	89	1	116	33	27	3	35	1.74
41238145--41238309	30	5.5	30	77	12	115	35	25	3	35	1.74
41238289--41238384	29	3.3	28	79	17	115	37	34	1	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41238297--41238374	28	2.7	29	92	4	131	37	30	0	32	1.58
41238298--41238412	57	2.0	58	80	11	130	37	31	3	27	1.74
41240255--41240319	32	2.0	32	100	0	130	41	30	15	12	1.84
41243122--41243158	2	18.5	2	100	0	74	51	0	0	48	1.00
41243667--41243717	23	2.2	23	83	13	61	45	0	1	52	1.12
41244386--41244429	19	2.3	20	80	11	56	54	0	4	40	1.21
41245372--41245414	22	2.0	22	86	9	61	25	4	0	69	1.07
41245706--41245975	30	9.2	29	75	10	219	35	20	1	42	1.60
41245706--41245926	59	3.7	60	88	1	302	35	20	1	42	1.61
41245878--41246062	57	3.2	56	78	7	194	31	26	2	39	1.70
41245714--41246038	29	11.1	27	71	15	125	33	23	1	40	1.65
41248785--41249140	58	6.1	58	70	11	217	36	5	23	34	1.77
41248687--41249047	173	2.1	174	86	2	503	38	5	23	32	1.77
41248796--41249048	29	8.8	29	65	22	88	36	4	25	33	1.77
41248832--41249140	119	2.6	116	80	9	283	38	4	22	34	1.75
41250749--41250819	26	2.7	25	89	4	97	25	9	23	40	1.85
41251217--41251297	11	7.5	11	74	10	60	49	2	1	46	1.23
41251217--41251256	17	2.4	16	91	4	62	50	0	2	47	1.14
41251217--41251303	6	14.8	6	71	17	67	48	3	1	47	1.26
41257131--41257200	29	2.4	29	78	2	77	50	20	7	22	1.72
41260067--41260131	26	2.4	27	85	10	89	67	1	4	26	1.18
41260149--41260199	19	2.8	18	79	5	66	64	1	3	29	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41260379--41260455	22	3.5	22	69	15	61	27	2	3	66	1.22
41261346--41261402	26	2.1	27	84	12	73	35	1	19	43	1.61
41261710--41261792	31	2.6	31	88	3	112	43	15	0	40	1.47
41273380--41273506	50	2.5	49	84	5	164	35	19	24	20	1.96
41273416--41273527	50	2.2	50	84	3	145	36	21	20	21	1.95
41273589--41273732	39	3.7	40	75	8	143	31	26	15	25	1.96
41273624--41273733	40	2.8	40	78	12	120	32	25	16	25	1.96
41273560--41273733	79	2.2	79	83	4	217	32	26	15	25	1.96
41274993--41275051	28	2.3	26	82	11	68	35	3	13	47	1.60
41275323--41275423	30	3.4	30	80	9	127	38	19	3	37	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182