genome.fa.s9.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  159  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48728576--48728713	30	4.6	30	73	8	95	44	12	17	25	1.83
48728526--48728713	90	2.1	88	85	3	243	45	13	16	24	1.83
48740670--48740749	36	2.2	36	97	0	151	33	21	22	22	1.97
48744450--48744505	25	2.3	24	84	3	76	50	7	5	37	1.53
48745689--48745739	22	2.4	22	87	6	70	35	0	0	64	0.94
48745997--48746085	6	15.0	6	76	18	89	44	3	0	51	1.18
48745997--48746085	17	5.4	16	81	14	101	44	3	0	51	1.18
48746014--48746064	11	4.8	11	76	9	52	41	5	0	52	1.25
48745997--48746082	37	2.3	38	84	10	113	43	3	0	53	1.18
48746825--48746860	3	12.0	3	93	0	63	63	0	2	33	1.08
48747933--48748028	30	3.2	30	95	1	167	40	19	3	36	1.68
48748022--48748387	59	6.2	59	89	1	531	31	27	6	34	1.82
48748080--48748387	29	10.5	30	67	15	124	31	27	6	34	1.82
48760342--48760998	68	9.5	68	79	11	640	32	18	21	26	1.97
48760521--48760936	139	3.0	139	91	3	639	33	18	21	26	1.97
48760342--48760998	207	3.2	208	83	9	733	32	18	21	26	1.97
48761296--48761384	6	15.0	6	76	18	89	44	3	0	51	1.18
48761296--48761384	17	5.4	16	81	14	101	44	3	0	51	1.18
48761313--48761363	11	4.8	11	76	9	52	41	5	0	52	1.25
48761296--48761381	37	2.3	38	84	10	113	43	3	0	53	1.18
48762114--48762158	3	15.0	3	95	0	81	64	0	2	33	1.06
48763228--48763367	30	4.7	30	85	5	169	36	25	2	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48763291--48763605	29	10.8	28	69	12	186	30	28	7	33	1.84
48763320--48763633	59	5.4	59	88	3	456	29	29	7	33	1.85
48773639--48773673	16	2.2	16	90	10	54	22	28	14	34	1.93
48778385--48778456	22	3.3	21	79	9	83	6	5	19	68	1.34
48778385--48778455	21	3.3	21	80	5	79	7	5	19	67	1.35
48778400--48778468	22	3.2	22	81	4	86	11	2	15	69	1.30
48778459--48778528	23	3.0	23	82	2	86	10	5	17	67	1.39
48778465--48778528	12	5.4	12	73	3	58	9	6	17	67	1.39
48779366--48779442	34	2.3	34	86	0	100	18	33	2	45	1.63
48779366--48779456	34	2.7	34	80	10	96	19	32	2	45	1.63
48779435--48779469	17	2.1	17	89	5	54	22	22	0	54	1.45
48784843--48784935	34	2.7	34	83	3	116	17	32	3	47	1.63
48784831--48784933	17	6.2	17	68	14	54	18	33	2	45	1.64
48792316--48792378	24	2.7	23	82	4	72	60	3	3	33	1.28
48793565--48793612	24	2.0	25	83	4	62	58	4	0	37	1.18
48793899--48793962	24	2.7	24	87	2	85	59	6	1	32	1.32
48801536--48801836	149	2.0	149	85	5	412	25	14	11	48	1.77
48802024--48802049	2	13.0	2	100	0	52	50	0	0	50	1.00
48803830--48803871	15	2.8	15	85	7	50	64	0	0	35	0.94
48803836--48803879	15	2.8	16	82	10	54	63	2	0	34	1.07
48804199--48804249	18	3.0	17	75	16	52	58	0	1	39	1.09
48804335--48804378	21	2.1	21	83	8	54	59	0	6	34	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48804427--48804462	11	3.4	11	88	3	56	25	0	0	75	0.81
48806706--48806909	100	2.1	97	82	8	245	48	3	3	44	1.36
48806824--48806894	28	2.5	29	75	15	76	46	2	0	50	1.16
48806824--48806901	29	2.7	27	76	11	77	46	2	1	50	1.23
48807010--48807056	20	2.4	20	82	10	53	65	2	4	27	1.22
48807957--48808002	22	2.1	21	88	4	65	13	2	4	80	0.95
48807977--48808019	18	2.3	18	84	11	52	13	0	2	83	0.74
48807971--48808019	17	2.8	17	82	11	64	14	0	2	83	0.73
48812887--48812932	2	23.0	2	100	0	92	50	0	0	50	1.00
48826130--48826157	5	5.6	5	100	0	56	17	0	0	82	0.68
48830197--48830238	18	2.3	18	91	0	66	33	50	0	16	1.46
48840568--48840610	6	7.5	6	79	10	54	44	0	4	51	1.22
48840568--48840610	11	3.8	11	81	3	50	44	0	4	51	1.22
48840568--48840610	17	2.5	17	80	0	59	44	0	4	51	1.22
48842806--48842903	40	2.5	40	81	6	110	30	27	21	20	1.98
48842992--48843053	6	10.5	6	79	10	56	27	22	0	50	1.50
48845243--48845410	87	2.0	85	84	7	223	35	26	3	35	1.74
48845330--48845546	59	3.6	59	82	6	249	30	26	4	38	1.77
48845349--48845457	30	3.7	29	75	12	96	33	27	3	34	1.75
48845220--48845472	29	8.6	31	73	10	162	35	26	3	33	1.74
48845330--48845577	120	2.1	120	81	6	290	30	26	5	37	1.79
48852718--48852742	9	2.8	9	100	0	50	92	0	8	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48853501--48854043	49	11.0	49	68	10	257	34	17	30	18	1.94
48853510--48854090	148	3.9	148	86	0	784	33	17	30	18	1.94
48853661--48854116	99	4.6	99	69	12	290	33	16	30	19	1.94
48853501--48854182	148	4.6	148	82	2	548	34	17	29	19	1.94
48854106--48854340	49	4.8	49	71	15	182	37	18	25	18	1.93
48853501--48854182	296	2.3	295	80	3	717	34	17	29	19	1.94
48854108--48854370	97	2.7	97	88	4	363	39	18	25	17	1.92
48854793--48854865	6	12.5	6	79	5	78	38	1	4	56	1.27
48854777--48854865	17	5.5	17	73	15	71	38	1	5	55	1.31
48856814--48856915	30	3.5	29	81	5	116	39	22	1	36	1.66
48856814--48857073	29	8.9	29	70	15	135	36	24	2	36	1.68
48856823--48857091	58	4.6	56	78	13	242	35	25	2	36	1.70
48858620--48858667	17	2.9	17	81	6	64	20	10	27	41	1.85
48858656--48858751	41	2.3	41	92	0	156	30	3	27	39	1.72
48860248--48860295	24	2.0	24	83	0	60	43	2	35	18	1.62
48865512--48865559	24	2.0	24	87	0	69	41	2	37	18	1.63
48868838--48869460	210	3.0	210	90	0	908	31	19	16	32	1.94
48875339--48875401	24	2.6	24	87	0	90	49	12	14	23	1.78
48875838--48875897	21	2.8	21	82	2	66	53	6	3	36	1.44
48875875--48875907	13	2.5	13	86	13	50	54	6	0	39	1.25
48877179--48877255	30	2.6	29	75	6	75	50	7	12	28	1.68
48879380--48879427	25	1.9	25	82	0	60	54	2	4	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48880080--48880127	15	3.1	15	80	14	62	72	2	0	25	0.95
48885872--48885905	9	3.7	9	88	4	50	73	0	5	20	1.04
48885871--48885906	10	3.7	10	85	7	56	75	0	5	19	1.00
48885935--48885981	6	8.3	6	85	4	55	17	2	2	78	0.94
48885935--48885982	5	8.8	5	86	8	51	18	2	2	77	0.97
48891690--48891744	6	9.3	6	76	4	58	45	3	0	50	1.19
48891676--48891744	18	3.6	18	75	17	66	40	4	1	53	1.30
48891676--48891759	41	2.0	42	84	6	109	41	3	3	51	1.36
48893627--48893869	121	2.0	120	87	4	346	34	24	3	37	1.72
48893627--48893869	30	8.1	30	84	5	321	34	24	3	37	1.72
48893641--48893958	90	3.5	90	79	8	294	33	23	3	38	1.73
48893882--48894099	29	7.5	28	70	14	138	34	22	4	38	1.74
48893882--48894134	30	8.6	30	70	14	154	33	22	4	38	1.75
48893882--48894156	58	4.7	60	79	10	250	33	22	5	38	1.76
48894000--48894191	58	3.3	57	81	6	210	32	22	4	40	1.75
48894054--48894217	28	5.7	29	70	16	103	34	23	5	36	1.78
48903216--48903263	22	2.2	22	88	3	71	75	4	8	12	1.18
48904074--48904116	19	2.3	19	84	8	52	58	4	0	37	1.19
48905591--48905621	6	5.3	6	92	7	55	83	0	0	16	0.64
48909659--48909698	21	1.9	21	89	0	62	25	17	15	42	1.88
48909666--48909709	21	2.1	21	82	0	52	27	15	15	40	1.88
48911249--48911309	22	2.8	22	83	11	65	73	3	9	13	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48911275--48911304	15	1.9	16	93	6	53	70	3	13	13	1.30
48912109--48912151	19	2.3	19	84	8	52	58	4	0	37	1.19
48914729--48914764	18	2.0	18	88	0	54	19	13	11	55	1.68
48915424--48918489	92	31.9	93	82	8	3137	35	15	18	31	1.92
48915422--48917455	194	10.5	194	86	5	2272	35	15	17	31	1.92
48917517--48918506	194	5.1	195	87	5	1153	35	15	17	31	1.91
48918724--48918818	6	16.5	6	66	8	54	47	4	2	46	1.33
48918724--48918777	23	2.3	23	87	0	72	44	3	1	50	1.30
48918724--48918790	23	3.2	22	72	24	63	46	2	2	47	1.33
48918747--48918811	34	1.9	34	83	0	85	44	3	3	49	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182