genome.fa.s9.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  166  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50440190--50440254	26	2.5	28	73	16	68	64	3	0	32	1.09
50440218--50440261	20	2.2	20	80	4	54	61	4	2	31	1.28
50449067--50449178	35	3.2	34	82	7	102	39	1	5	53	1.34
50449095--50449183	6	15.2	6	70	16	53	41	2	4	51	1.34
50449067--50449178	52	2.2	52	87	6	156	39	1	5	53	1.34
50449067--50449178	17	6.5	17	78	7	118	39	1	5	53	1.34
50452443--50452759	30	10.7	29	77	11	218	36	23	3	37	1.72
50452443--50452665	60	3.7	60	90	1	331	37	20	4	37	1.72
50452443--50452665	90	2.5	90	85	5	299	37	20	4	37	1.72
50452443--50452694	60	4.2	60	87	2	330	36	21	3	37	1.72
50452443--50452762	90	3.6	88	79	9	294	36	23	3	36	1.72
50452653--50452966	59	5.3	59	83	4	352	32	27	3	36	1.74
50452660--50452989	118	2.8	118	83	5	409	32	27	3	36	1.75
50452647--50452960	29	10.7	29	70	18	147	32	26	3	37	1.72
50452889--50452995	29	3.8	27	75	17	83	31	29	5	32	1.81
50457124--50457523	59	6.8	59	78	9	338	36	5	24	34	1.77
50457167--50457376	29	7.2	29	68	18	112	35	4	24	35	1.77
50457433--50457531	29	3.4	27	74	12	90	39	3	24	33	1.71
50457422--50457553	59	2.2	59	82	6	151	38	3	25	33	1.71
50457452--50457726	29	9.5	29	70	13	106	40	4	22	32	1.74
50457672--50457738	30	2.3	28	89	7	98	35	1	26	35	1.66
50458898--50458927	15	2.1	15	93	6	53	20	10	20	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50459015--50459078	17	3.8	17	83	8	76	51	4	0	43	1.22
50459009--50459078	6	12.2	6	73	19	60	51	4	0	44	1.21
50459002--50459078	40	1.9	39	87	7	111	51	3	0	44	1.19
50459504--50459724	39	5.7	39	72	3	178	23	22	31	21	1.98
50459461--50459727	78	3.4	77	81	4	295	23	21	32	22	1.98
50460006--50460222	98	2.2	99	82	5	255	17	24	16	40	1.90
50460190--50460569	99	3.9	99	83	4	396	16	24	19	39	1.92
50460102--50460568	49	9.5	49	72	12	289	17	24	18	39	1.91
50460420--50460742	171	1.9	172	86	4	465	17	23	20	39	1.92
50460661--50461409	49	15.2	49	72	8	482	17	24	18	38	1.92
50460321--50460849	270	2.0	270	87	2	758	17	23	20	39	1.92
50460591--50461410	98	8.3	98	86	1	1034	17	24	19	39	1.92
50460591--50461410	197	4.2	196	87	0	1066	17	24	19	39	1.92
50461549--50461712	49	3.4	48	73	13	163	17	25	19	37	1.94
50461513--50461764	98	2.6	98	89	1	353	17	25	19	38	1.93
50461589--50461763	49	3.6	49	75	8	149	18	24	20	36	1.95
50461159--50461871	354	2.0	354	97	0	1345	20	23	21	34	1.97
50489114--50490689	603	2.6	602	88	5	2240	39	10	10	39	1.75
50497251--50497279	12	2.4	12	100	0	58	27	6	0	65	1.18
50523196--50523452	59	4.4	59	84	4	254	33	3	25	36	1.75
50523247--50523470	29	7.6	30	74	11	194	33	4	25	36	1.75
50523226--50523471	59	4.2	58	85	7	300	34	3	25	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50525435--50525538	17	6.1	17	76	10	79	52	3	1	41	1.30
50525444--50525538	6	16.3	6	72	14	74	53	4	2	40	1.32
50525444--50525538	11	8.2	12	72	14	74	53	4	2	40	1.32
50525446--50525539	47	2.0	47	85	4	127	52	4	3	40	1.37
50525869--50526490	202	3.1	199	82	4	684	24	21	18	35	1.96
50529987--50530067	30	2.7	30	80	1	92	39	1	19	39	1.60
50530012--50530102	30	3.0	29	84	6	110	31	1	25	41	1.62
50529987--50530102	59	1.9	59	82	5	144	36	1	22	39	1.64
50530691--50530834	76	1.9	77	92	1	245	27	15	10	45	1.79
50533873--50533941	29	2.3	28	83	11	84	36	2	27	33	1.72
50533889--50533975	29	3.0	29	85	6	97	33	3	32	31	1.75
50533932--50534021	27	3.2	27	85	4	99	30	5	25	38	1.79
50533933--50534023	28	3.2	28	83	9	96	28	5	26	39	1.78
50533953--50534025	27	2.7	27	89	2	101	34	5	21	38	1.77
50534008--50534083	29	2.5	30	85	8	100	38	0	17	44	1.49
50535692--50535769	17	4.6	17	77	1	77	56	5	3	34	1.40
50535691--50535769	34	2.4	33	80	4	95	55	5	3	35	1.40
50536154--50536756	210	2.9	210	88	0	837	20	21	19	37	1.94
50546656--50546795	75	1.9	75	93	0	244	46	10	13	30	1.76
50547717--50547779	29	2.2	29	86	8	85	33	4	26	34	1.78
50547777--50547846	30	2.4	29	88	6	99	40	4	18	37	1.71
50549481--50549505	13	1.9	13	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50549803--50549833	16	2.0	15	93	6	53	77	6	6	9	1.12
50562058--50562114	21	2.5	22	80	8	71	19	7	12	61	1.53
50562536--50562909	99	3.9	98	78	7	401	37	15	25	21	1.92
50562519--50562897	49	7.8	49	67	14	196	37	14	26	20	1.91
50562527--50562940	189	2.1	192	83	6	498	37	15	26	20	1.92
50566850--50566906	26	2.1	27	87	3	80	17	7	22	52	1.68
50566902--50566985	17	4.9	17	79	1	87	57	5	2	34	1.36
50566905--50566985	34	2.4	33	83	8	99	56	6	2	34	1.37
50566906--50566962	11	5.1	11	74	4	51	54	8	3	33	1.48
50568115--50568153	20	2.0	20	85	10	53	69	2	2	25	1.14
50568343--50568717	166	2.2	170	91	5	607	29	20	14	35	1.92
50570202--50570257	24	2.5	22	85	8	76	30	0	16	53	1.43
50572811--50572869	30	2.0	30	86	6	84	33	22	5	38	1.76
50573288--50573339	24	2.2	24	85	0	68	55	3	5	34	1.42
50574848--50574886	18	2.0	21	85	14	57	38	7	5	48	1.54
50574952--50574977	13	2.0	13	100	0	52	53	15	7	23	1.67
50579929--50579977	23	2.1	23	85	7	64	77	4	16	2	1.01
50579986--50580025	11	3.8	10	83	9	53	77	0	22	0	0.77
50582649--50582684	12	3.1	12	96	4	65	50	0	8	41	1.33
50583231--50584006	390	2.0	389	92	2	1310	33	16	13	36	1.88
50584489--50584562	30	2.5	30	76	10	80	39	1	2	56	1.22
50585278--50585562	144	2.0	144	94	0	498	42	21	14	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50590186--50590350	83	2.0	83	98	0	321	32	12	12	43	1.79
50593972--50594010	17	2.3	17	90	0	60	15	12	25	46	1.81
50596800--50596826	3	9.0	3	100	0	54	0	33	0	66	0.92
50601025--50601075	16	3.2	16	69	20	52	29	11	17	41	1.85
50601009--50601075	32	2.1	32	94	0	116	28	11	17	41	1.85
50606057--50606090	17	2.0	17	100	0	68	29	35	0	35	1.58
50615876--50615969	6	15.8	6	67	17	54	39	3	3	54	1.33
50615889--50615968	17	4.9	17	83	9	85	37	3	2	56	1.31
50615875--50615930	28	2.0	29	89	3	87	37	1	3	57	1.27
50615910--50615968	31	1.9	31	89	0	91	38	5	1	54	1.33
50616757--50616811	22	2.6	21	80	5	56	45	0	9	45	1.35
50617882--50617976	29	3.2	29	81	8	95	37	25	5	31	1.78
50617941--50618196	59	4.3	60	87	3	340	32	29	3	35	1.73
50617941--50618196	119	2.2	118	88	3	381	32	29	3	35	1.73
50617983--50618194	30	7.1	29	68	19	134	30	29	3	36	1.75
50622945--50622983	16	2.5	16	83	4	53	71	0	2	25	0.98
50624476--50624563	42	2.1	42	87	4	124	28	28	18	25	1.98
50627647--50627696	20	2.5	21	80	9	59	58	10	24	8	1.57
50628503--50628662	41	3.9	41	83	1	205	16	34	18	30	1.94
50628674--50628857	41	4.6	40	88	4	244	14	34	20	30	1.93
50628578--50628757	96	1.9	96	89	1	281	14	37	18	30	1.90
50628741--50628814	24	3.4	24	66	24	72	13	36	24	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50628537--50628798	136	1.9	137	91	0	427	15	37	18	28	1.91
50628674--50628857	81	2.3	80	84	4	244	14	34	20	30	1.93
50633774--50633814	21	2.0	21	90	0	64	43	12	4	39	1.63
50636607--50636669	33	1.9	33	84	9	85	38	7	17	36	1.79
50636847--50636888	21	2.0	21	85	0	57	45	14	2	38	1.58
50637027--50637068	21	2.0	21	85	4	57	26	14	19	40	1.89
50644201--50644241	22	2.0	22	85	9	59	68	2	19	9	1.29
50652195--50652389	98	2.0	98	88	5	288	37	14	18	28	1.91
50652632--50652724	29	3.2	28	75	14	82	37	6	25	30	1.81
50652631--50652926	57	5.1	59	76	12	238	39	5	24	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182