genome.fa.s9.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  37  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14056532--14056756	29	7.7	29	80	9	190	36	23	3	36	1.72
14056563--14056752	59	3.2	58	80	7	197	36	21	3	37	1.71
14056563--14056752	88	2.1	88	82	6	224	36	21	3	37	1.71
14056579--14056779	29	6.9	28	78	11	135	35	23	3	36	1.74
14058386--14058429	7	6.3	7	100	0	88	40	0	0	59	0.98
14065197--14065255	26	2.3	25	82	5	64	66	0	0	33	0.92
14065214--14065261	16	3.1	15	78	6	51	68	0	0	31	0.90
14072383--14072412	11	2.7	11	89	0	51	26	10	6	56	1.57
14081083--14081143	18	3.4	17	78	13	52	73	0	22	3	0.97
14083099--14083156	16	3.6	16	72	11	55	18	27	0	53	1.45
14092456--14092569	58	2.0	58	94	0	201	41	15	21	21	1.90
14092558--14092587	15	2.0	15	100	0	60	40	20	26	13	1.89
14092500--14092642	73	2.0	73	95	0	259	41	16	20	20	1.90
14096315--14096348	17	2.0	17	88	11	52	58	0	0	41	0.98
14106570--14106602	5	6.6	5	100	0	66	0	0	57	42	0.98
14106838--14106917	39	2.1	39	100	0	160	37	17	10	35	1.83
14114370--14114406	13	2.5	15	87	12	51	43	0	5	51	1.24
14120996--14121066	29	2.4	29	80	0	79	61	7	1	29	1.30
14135211--14135258	24	2.0	24	87	0	69	18	33	2	45	1.61
14145999--14146039	22	2.0	20	86	13	57	48	4	7	39	1.52
14147244--14147276	14	2.3	15	89	5	50	57	0	6	36	1.23
14151055--14151112	24	2.5	24	86	8	75	37	15	12	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14154884--14154948	31	2.3	27	77	15	67	43	10	7	38	1.68
14160561--14160608	22	2.2	23	85	7	64	35	12	0	52	1.40
14177651--14177695	19	2.4	19	81	7	56	37	0	4	57	1.19
14177695--14177724	14	2.1	14	93	0	51	16	6	3	73	1.18
14179878--14180026	28	5.2	30	71	21	104	36	2	25	35	1.68
14179893--14180026	28	4.7	27	73	20	105	37	1	26	34	1.66
14179929--14180273	30	11.8	28	75	11	264	37	0	22	39	1.59
14179936--14180292	60	6.1	60	85	6	407	37	0	21	39	1.59
14182213--14182292	27	2.9	28	77	9	83	57	10	0	32	1.32
14182204--14182258	16	3.4	16	82	5	74	54	5	0	40	1.23
14183310--14183354	19	2.4	19	81	7	56	37	0	4	57	1.19
14183354--14183383	14	2.1	14	93	0	51	16	6	3	73	1.18
14186643--14186765	23	5.3	23	80	9	124	43	21	21	13	1.86
14186600--14186735	69	2.0	66	84	13	177	43	21	22	13	1.87
14190854--14190898	19	2.4	19	81	7	56	37	0	4	57	1.19
14190937--14190989	28	1.9	27	84	3	70	37	7	13	41	1.72
14209577--14209619	15	2.9	15	75	0	50	34	0	0	65	0.93
14209708--14209759	21	2.6	19	73	8	50	57	1	0	40	1.10
14209703--14209764	30	2.1	30	81	6	72	61	1	0	37	1.06
14218333--14218368	16	2.2	16	90	0	54	63	0	2	33	1.08
14219858--14219929	22	3.5	22	67	19	57	56	5	0	37	1.22
14228517--14228712	39	5.0	39	90	0	284	25	13	33	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14229855--14229915	26	2.4	26	83	5	81	37	6	21	34	1.79
14235493--14235534	22	2.0	21	86	13	59	45	4	2	47	1.36
14237531--14237735	108	1.9	108	89	6	317	32	13	23	30	1.93
14240121--14240145	2	12.5	2	100	0	50	0	48	0	52	1.00
14247597--14247635	18	2.2	18	85	0	51	25	12	10	51	1.71
14247820--14247901	20	3.9	21	76	16	80	69	15	2	12	1.29
14247849--14247929	21	3.9	21	69	11	58	71	12	4	11	1.28
14248421--14248482	26	2.4	26	75	0	70	37	1	19	41	1.61
14248679--14248728	24	2.1	23	85	3	64	50	0	0	50	1.00
14249047--14249074	13	2.2	13	100	0	56	32	28	0	39	1.57
14251767--14251803	17	2.2	17	90	0	56	18	24	0	56	1.41
14257316--14257357	16	2.8	15	82	7	50	30	0	9	59	1.29
14264072--14264125	14	3.6	14	72	18	54	31	1	0	66	1.02
14264072--14264144	32	2.2	33	87	2	112	34	2	0	63	1.09
14265060--14265093	14	2.4	14	90	5	50	23	2	2	70	1.15
14265686--14265710	2	12.5	2	100	0	50	0	52	0	48	1.00
14267687--14267727	3	13.7	3	100	0	82	31	0	0	68	0.90
14278478--14278519	18	2.3	18	84	8	50	57	7	11	23	1.59
14279244--14279303	20	3.1	20	72	13	54	28	1	1	68	1.09
14281316--14281367	25	2.0	27	85	7	72	59	9	3	26	1.46
14285844--14285888	3	15.0	3	100	0	90	66	0	0	33	0.92
14287155--14287188	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14290525--14290569	3	15.0	3	85	0	63	6	0	64	28	1.19
14290529--14290590	6	10.3	6	87	6	54	16	0	66	17	1.26
14290568--14290594	3	9.0	3	100	0	54	33	0	66	0	0.92
14290692--14290737	6	7.7	6	87	0	56	4	2	76	17	1.06
14292885--14292919	18	1.9	18	88	11	54	17	2	5	74	1.14
14293939--14294022	2	42.0	2	100	0	168	0	50	0	50	1.00
14295537--14295566	15	2.0	15	93	0	51	10	43	0	46	1.37
14295993--14296042	24	2.1	24	84	0	64	8	24	4	64	1.38
14299522--14299871	62	5.8	61	78	7	315	29	20	15	34	1.94
14300688--14300779	30	3.1	30	83	9	91	60	4	7	27	1.43
14302361--14302740	90	3.9	93	87	10	534	52	4	4	38	1.42
14302632--14302663	3	10.7	3	100	0	64	65	0	0	34	0.93
14302539--14302740	105	1.9	107	90	5	327	52	4	3	38	1.42
14306335--14306854	57	8.8	58	73	10	376	33	15	19	31	1.93
14306335--14306862	117	4.5	116	83	5	593	33	15	19	31	1.93
14341701--14341726	3	8.7	3	100	0	52	30	0	0	69	0.89
14342334--14342383	17	2.9	17	82	5	55	46	2	14	38	1.56
14344180--14344225	18	2.6	18	86	13	60	63	0	0	36	0.95
14364319--14364345	5	5.4	5	100	0	54	18	0	81	0	0.69
14364351--14364399	25	2.0	24	96	4	89	38	0	0	61	0.96
14364353--14364392	19	2.0	20	86	13	57	37	0	0	62	0.95
14364356--14364414	25	2.2	25	88	8	82	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14364479--14364523	23	2.0	23	90	0	72	35	0	0	64	0.94
14364478--14364541	23	2.9	21	80	15	67	32	1	1	64	1.13
14365438--14365479	12	3.6	12	74	6	50	21	11	23	42	1.86
14365423--14365484	23	2.7	23	84	2	88	29	11	17	41	1.84
14373989--14374036	20	2.4	20	77	19	55	20	27	18	33	1.96
14373983--14374036	19	2.8	18	78	15	56	18	27	20	33	1.96
14376580--14376618	21	1.9	19	85	10	51	61	10	10	17	1.55
14378450--14378498	22	2.4	21	83	12	66	32	2	0	65	1.04
14378481--14378523	22	1.9	22	85	4	59	32	0	6	60	1.23
14378593--14378668	24	3.3	22	75	14	64	59	2	1	36	1.20
14385607--14385655	18	2.7	18	81	9	55	63	8	6	22	1.44
14385956--14385997	2	21.0	2	100	0	84	50	0	0	50	1.00
14386260--14386284	3	8.3	3	100	0	50	32	32	0	36	1.58
14392343--14392368	1	26.0	1	100	0	52	0	0	100	0	0.00
14401576--14402029	226	2.0	226	98	0	874	35	5	8	50	1.57
14403025--14403081	29	2.0	28	86	6	78	38	14	7	40	1.73
14403479--14403527	20	2.5	19	87	12	64	59	0	0	40	0.98
14403496--14403534	20	2.0	20	89	0	60	61	0	0	38	0.96
14403478--14403716	104	2.2	106	78	13	251	51	6	6	35	1.54
14403618--14403653	7	5.1	7	100	0	72	69	0	0	30	0.89
14404238--14404304	29	2.3	29	81	0	89	38	2	14	43	1.61
14407362--14407395	17	2.0	17	88	0	50	23	5	5	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14408148--14408202	28	2.0	28	92	0	92	52	12	12	21	1.72
14408514--14408564	26	2.0	26	96	0	93	9	29	15	45	1.79
14409749--14409786	20	1.9	20	88	0	58	21	18	2	57	1.52
14410019--14410055	14	2.7	14	91	4	58	37	5	0	56	1.22
14418051--14418094	23	2.0	22	86	4	61	61	2	6	29	1.34
14420229--14420284	29	1.9	29	92	7	96	58	1	0	39	1.08
14420231--14420295	30	2.2	29	86	8	87	60	1	1	36	1.16
14420231--14420302	29	2.4	30	79	9	85	61	1	1	36	1.14
14420793--14420967	90	2.0	87	82	3	215	30	9	20	40	1.83
14426841--14426895	22	2.5	22	85	5	67	58	5	1	34	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182