genome.fa.s9.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  48  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16761525--16761587	24	2.6	24	87	0	90	23	14	9	52	1.71
16764993--16765086	46	2.0	47	95	2	172	61	7	3	27	1.38
16765535--16765637	46	2.3	45	81	11	122	18	7	5	67	1.35
16774908--16774955	21	2.3	22	82	10	57	45	2	4	47	1.33
16792249--16792320	12	6.0	12	76	0	63	19	9	37	33	1.85
16792251--16792290	21	1.9	21	84	0	53	15	2	47	35	1.58
16808840--16808973	10	12.9	11	70	15	56	29	4	2	64	1.25
16808847--16808966	21	5.9	20	72	20	65	29	4	1	65	1.21
16808838--16809007	9	16.9	10	67	18	61	28	5	2	64	1.28
16808838--16809148	9	31.9	9	64	20	58	31	4	2	61	1.28
16808838--16808956	29	4.0	28	75	16	89	30	5	1	63	1.26
16809087--16809149	29	2.1	30	82	8	76	38	1	1	58	1.17
16814705--16814762	16	3.6	16	81	6	64	43	6	22	27	1.79
16814922--16815066	32	5.1	26	70	19	101	50	0	0	48	1.10
16814915--16815084	58	2.9	58	85	6	211	51	0	1	46	1.12
16815050--16815098	24	2.0	24	81	14	57	57	0	6	36	1.24
16819007--16819055	25	2.0	25	100	0	98	28	20	6	44	1.75
16819949--16820154	103	2.0	103	98	0	394	42	22	12	22	1.87
16820052--16820403	139	2.5	139	96	0	643	43	21	13	21	1.87
16821859--16821903	21	2.1	21	95	0	81	48	17	6	26	1.72
16822483--16822854	53	6.8	53	72	12	247	30	15	16	37	1.90
16823722--16823783	30	2.1	30	90	0	97	64	3	4	27	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16824852--16824876	13	1.9	13	100	0	50	64	4	0	32	1.12
16824883--16824953	36	2.0	36	88	2	108	53	5	5	35	1.48
16824945--16825007	18	3.4	17	79	12	63	60	6	6	26	1.45
16826390--16826529	41	3.1	41	66	23	102	50	4	2	43	1.34
16826400--16826546	42	3.3	43	68	19	129	47	4	3	44	1.38
16826253--16827061	373	2.2	373	91	2	1304	46	4	5	43	1.47
16826253--16827061	95	8.7	93	90	2	1203	46	4	5	43	1.47
16827112--16827171	18	3.1	18	72	18	50	38	11	1	48	1.50
16827711--16827755	20	2.2	21	88	4	65	73	2	8	15	1.18
16828555--16828631	30	2.7	29	78	9	86	62	5	0	32	1.17
16832400--16832709	60	5.3	60	79	9	286	39	16	15	28	1.89
16832609--16832789	55	3.3	55	80	8	208	35	17	14	33	1.90
16838125--16838159	17	2.1	17	100	0	70	0	20	0	80	0.72
16838632--16838690	21	2.8	21	97	0	109	45	32	0	22	1.52
16838674--16838703	15	2.0	15	100	0	60	46	33	0	20	1.51
16838740--16838787	10	4.7	10	86	2	69	16	27	29	27	1.97
16838740--16838787	20	2.3	21	92	3	80	16	27	29	27	1.97
16838799--16838879	7	12.0	7	75	7	51	17	22	24	35	1.95
16838802--16838879	20	3.9	20	84	0	93	17	20	24	37	1.94
16839934--16839975	3	14.3	3	95	5	77	30	0	0	69	0.89
16845403--16845437	17	2.1	17	100	0	70	0	20	0	80	0.72
16845910--16845968	21	2.8	21	94	0	100	45	30	0	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16846018--16846065	20	2.3	21	89	3	71	20	27	25	27	1.99
16846034--16846065	10	3.0	11	90	9	57	18	28	28	25	1.98
16846077--16846157	7	12.0	7	75	7	51	17	22	24	35	1.95
16846080--16846157	20	3.9	20	84	0	93	17	20	24	37	1.94
16847214--16847270	3	19.3	3	96	3	107	31	0	0	68	0.90
16851480--16851516	19	1.9	19	88	0	56	35	24	5	35	1.78
16853769--16853824	9	6.2	9	72	15	53	48	0	0	51	1.00
16855117--16855155	17	2.2	18	86	9	53	28	0	2	69	1.02
16859982--16860013	9	3.6	9	100	0	64	9	0	0	90	0.45
16862981--16863026	22	2.1	22	83	0	56	39	0	10	50	1.38
16863450--16863509	21	2.9	21	82	9	70	36	0	25	38	1.56
16866697--16866732	18	2.0	18	89	10	56	0	25	2	72	0.98
16866810--16866848	19	2.1	19	95	0	69	25	28	43	2	1.68
16875840--16875877	20	1.9	20	89	10	60	63	0	0	36	0.95
16877869--16877914	19	2.4	19	85	7	58	36	19	8	34	1.83
16878748--16878876	23	5.8	23	65	18	76	44	18	23	13	1.86
16878708--16878908	87	2.3	87	93	1	332	44	17	23	13	1.85
16878748--16878909	23	7.2	23	66	18	72	43	17	24	13	1.86
16879282--16879311	16	1.9	16	93	6	53	63	13	0	23	1.29
16882617--16882752	60	2.3	60	84	2	175	33	2	22	42	1.65
16882610--16882744	30	4.5	30	73	10	107	34	2	22	40	1.66
16884706--16884751	17	2.7	17	90	6	67	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16885381--16885436	21	2.7	21	83	5	60	26	19	17	35	1.94
16887374--16887429	11	5.0	11	83	12	69	41	0	3	55	1.17
16887356--16887445	17	5.3	17	81	8	85	40	1	5	53	1.32
16887374--16887428	6	9.7	6	78	11	62	41	0	3	54	1.18
16887372--16887429	5	10.6	5	80	14	53	43	0	3	53	1.17
16887388--16887446	28	2.1	28	84	12	77	42	0	5	52	1.23
16888185--16888359	30	6.0	27	76	13	127	38	24	1	35	1.66
16888195--16888339	30	5.0	29	77	9	134	38	24	2	34	1.67
16888189--16888339	58	2.5	59	85	8	200	39	24	1	33	1.67
16888200--16888415	30	7.4	29	74	13	124	37	25	1	36	1.65
16891099--16891149	25	2.0	25	100	0	102	33	19	19	27	1.96
16909833--16909871	17	2.2	18	86	4	53	48	2	7	41	1.45
16925369--16925510	40	3.4	40	68	13	115	39	6	7	46	1.58
16925346--16925510	85	1.9	86	96	1	305	38	6	8	46	1.59
16927675--16927857	30	6.2	30	79	11	157	37	20	2	38	1.67
16927690--16927848	30	5.4	29	83	7	169	38	20	1	38	1.64
16927678--16927848	59	2.9	60	82	4	213	38	19	2	39	1.65
16927678--16927852	29	5.9	29	78	11	151	37	20	2	38	1.68
16928841--16928875	18	1.9	18	94	0	61	62	8	5	22	1.45
16929703--16929760	23	2.5	23	82	0	71	20	18	27	32	1.97
16934797--16934830	17	2.0	17	88	0	50	64	5	5	23	1.38
16942943--16943139	97	2.0	98	87	4	283	35	15	18	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16943428--16943841	29	14.1	29	77	10	254	35	4	26	33	1.76
16943461--16943841	88	4.3	87	78	10	292	35	4	25	34	1.76
16943456--16943839	60	6.6	58	76	10	273	35	4	26	34	1.76
16943660--16943827	90	1.9	89	87	1	246	36	2	22	37	1.70
16943644--16943841	90	2.2	88	80	8	238	35	3	24	36	1.71
16945520--16945577	17	3.4	17	83	11	73	53	1	1	43	1.21
16946011--16946090	42	1.9	42	86	0	115	41	13	26	18	1.88
16946107--16946268	87	1.9	88	84	1	218	42	17	20	19	1.89
16946342--16946435	48	2.0	48	82	0	116	37	18	23	21	1.94
16946303--16946537	123	1.9	124	88	2	357	39	18	20	21	1.93
16946345--16948085	208	8.4	207	86	2	2315	38	16	20	23	1.92
16946888--16947049	85	1.9	85	89	0	252	36	14	25	23	1.93
16947091--16947256	85	2.0	85	80	4	192	38	14	21	25	1.91
16947303--16947464	85	1.9	85	86	5	229	40	14	20	24	1.90
16947719--16947871	48	3.5	44	75	20	133	37	15	24	22	1.92
16947760--16947833	37	2.0	37	97	0	139	39	17	18	24	1.92
16947711--16947881	85	2.0	85	86	2	236	38	16	22	22	1.93
16947796--16947888	48	1.9	48	88	0	141	38	17	21	22	1.93
16947923--16948085	85	1.9	85	84	2	220	36	17	22	23	1.94
16949460--16949557	36	2.7	36	87	0	133	23	26	17	32	1.96
16951757--16951923	85	2.0	85	87	2	246	39	18	19	22	1.92
16952010--16952142	37	3.5	37	67	17	108	38	18	19	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16951986--16952144	79	2.0	79	92	0	264	39	17	20	22	1.92
16952124--16952215	48	1.9	48	86	4	132	39	15	21	23	1.92
16952093--16952437	163	2.1	162	87	2	496	39	16	20	24	1.92
16954002--16954152	30	5.1	30	79	10	166	35	23	3	36	1.74
16954002--16954152	59	2.5	60	78	11	166	35	23	3	36	1.74
16954002--16954177	30	6.0	29	80	10	164	35	25	3	35	1.75
16955317--16955353	18	2.1	18	89	0	56	32	8	8	51	1.61
16955403--16955433	9	3.4	9	90	0	53	38	25	9	25	1.86
16955707--16955757	9	5.6	9	80	13	59	68	1	0	29	1.00
16956043--16956080	20	1.9	20	94	0	67	50	13	5	31	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182