genome.fa.s9.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  45  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16172308--16172335	6	4.7	6	100	0	56	0	50	35	14	1.43
16172404--16172483	13	6.1	13	73	1	61	35	5	3	56	1.39
16172411--16172484	26	2.9	25	75	13	78	35	5	5	54	1.47
16172782--16172879	27	3.6	27	90	0	160	29	11	25	33	1.91
16174177--16174910	379	1.9	381	81	4	872	38	14	17	29	1.90
16175791--16176862	375	2.8	375	81	5	1250	40	13	16	29	1.87
16178763--16178791	14	2.1	14	100	0	58	51	20	13	13	1.75
16180128--16180859	377	1.9	378	79	4	823	38	13	19	28	1.89
16182851--16183955	379	2.9	375	83	5	1311	38	13	17	29	1.89
16185775--16185803	14	2.1	14	100	0	58	51	20	13	13	1.75
16185778--16187617	381	4.9	382	85	3	2154	39	13	17	29	1.88
16186918--16188793	964	1.9	960	83	4	2391	36	13	16	33	1.88
16189030--16190899	944	2.0	955	89	3	2870	37	13	15	33	1.86
16190728--16191440	355	2.0	355	80	5	791	39	13	16	29	1.88
16192183--16192729	280	2.0	274	80	6	623	37	14	17	31	1.89
16193437--16194953	378	4.0	376	82	4	1694	39	13	17	29	1.88
16195171--16195893	377	1.9	379	80	6	842	40	12	17	30	1.86
16196827--16197633	376	2.1	376	83	4	1004	38	14	17	29	1.89
16198358--16199233	378	2.3	380	82	2	1037	39	13	17	29	1.88
16201113--16202175	367	2.9	374	80	7	1053	40	13	17	29	1.87
16203285--16203323	20	2.0	20	84	0	51	38	7	15	38	1.76
16203405--16203671	59	4.5	61	80	7	237	36	1	26	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16203405--16203678	30	9.2	30	80	5	270	36	1	26	36	1.64
16204624--16204662	14	2.6	15	92	8	62	7	15	12	64	1.49
16205368--16205411	18	2.4	18	85	11	54	52	4	0	43	1.22
16206125--16206178	23	2.3	23	90	0	81	31	24	22	22	1.98
16212132--16212424	59	5.1	58	78	11	185	34	3	25	36	1.73
16212179--16212429	88	2.9	87	78	12	262	36	1	25	36	1.66
16212177--16212454	59	4.8	59	77	9	209	35	1	25	37	1.67
16212179--16212468	29	9.9	29	77	10	193	35	1	25	36	1.67
16212611--16212676	32	2.0	32	85	8	89	54	4	16	24	1.61
16225426--16225490	26	2.5	25	85	5	76	27	18	23	30	1.97
16225470--16225524	26	2.1	26	82	0	65	30	20	16	32	1.94
16225479--16225546	26	2.6	26	83	0	91	29	19	22	29	1.98
16230313--16230646	168	2.0	169	82	6	410	42	10	9	36	1.73
16232186--16232216	14	2.2	14	94	0	53	12	3	19	64	1.41
16238332--16238377	25	1.9	25	86	8	69	34	4	6	54	1.46
16242326--16242382	23	2.6	22	84	13	73	21	1	5	71	1.14
16243331--16243370	18	2.2	18	91	8	64	75	0	15	10	1.05
16244400--16244445	25	1.9	25	86	8	69	34	4	6	54	1.46
16245528--16246614	581	1.9	581	86	1	1543	34	15	14	34	1.89
16246600--16246628	14	2.1	14	100	0	58	13	13	20	51	1.75
16247621--16247647	14	1.9	14	100	0	54	14	14	18	51	1.76
16252278--16252724	123	3.6	124	88	4	638	43	7	10	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16252277--16252724	246	1.8	247	89	4	708	43	7	10	39	1.66
16257733--16257778	14	3.1	16	90	6	55	13	17	17	52	1.75
16257738--16257778	14	2.9	14	96	0	73	14	17	17	51	1.77
16257230--16258371	605	1.9	607	82	4	1462	33	15	15	35	1.89
16257997--16258737	377	2.0	377	79	5	820	30	18	12	38	1.88
16259006--16260033	374	2.8	365	83	6	1170	29	16	14	39	1.88
16260050--16260078	14	2.1	14	100	0	58	13	13	20	51	1.75
16262033--16263078	377	2.8	372	82	4	1143	30	16	12	40	1.86
16264263--16265634	378	3.6	375	86	2	1673	30	17	12	38	1.87
16264263--16265634	376	3.6	375	86	3	1682	30	17	12	38	1.87
16269872--16269929	23	2.5	23	88	0	80	20	18	29	31	1.97
16273308--16274201	209	4.3	209	87	3	1111	35	17	23	23	1.95
16275309--16275345	19	1.9	19	100	0	74	43	2	5	48	1.40
16275310--16275365	10	5.7	10	78	4	60	50	1	3	44	1.29
16294789--16294932	69	2.1	69	93	0	243	39	9	11	39	1.74
16295338--16295418	41	2.0	41	100	0	162	20	9	9	59	1.58
16297713--16297779	13	4.8	13	83	10	80	49	10	2	37	1.53
16297714--16297779	28	2.4	28	100	0	132	50	10	3	36	1.53
16297714--16297785	15	5.1	15	81	9	89	50	9	5	34	1.59
16299702--16299808	3	35.7	3	67	3	54	8	3	53	34	1.49
16299777--16299857	21	3.7	21	73	9	72	8	7	49	34	1.62
16300140--16300174	15	2.3	15	90	0	52	14	2	45	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16300246--16300653	21	19.2	21	74	7	232	25	28	9	36	1.88
16300303--16300644	9	37.3	9	69	4	146	25	28	9	36	1.87
16300314--16300645	6	56.8	6	73	10	134	25	28	9	36	1.88
16300266--16300644	12	32.2	12	73	9	208	25	28	9	36	1.87
16300467--16300523	15	3.6	15	73	13	60	29	28	7	35	1.83
16300303--16300644	27	12.5	28	75	7	188	25	28	9	36	1.87
16302726--16302800	24	3.1	24	94	0	132	25	20	22	32	1.98
16305047--16305285	9	26.6	9	71	9	130	22	29	10	37	1.88
16305053--16305291	21	11.5	21	73	13	120	22	28	10	38	1.88
16305045--16305282	36	6.7	37	75	7	190	21	28	11	37	1.88
16305043--16305286	15	15.9	15	74	6	139	22	29	11	37	1.88
16305044--16305280	24	9.9	24	76	10	148	21	29	11	37	1.89
16305403--16305454	18	2.8	19	85	8	72	40	51	0	7	1.30
16307754--16307826	20	3.7	20	76	10	78	5	13	16	64	1.46
16307754--16307831	15	5.3	15	76	14	72	6	14	15	64	1.48
16307800--16307863	20	3.3	19	79	16	69	12	14	7	65	1.46
16307754--16307831	5	15.8	5	77	10	63	6	14	15	64	1.48
16307998--16308055	25	2.2	28	79	14	70	31	0	3	65	1.09
16310360--16310400	15	2.7	15	88	0	64	14	14	9	60	1.57
16312807--16313020	5	41.4	5	71	13	105	61	17	14	6	1.52
16312674--16312926	27	9.7	27	72	17	205	63	15	12	9	1.52
16314081--16314138	5	11.8	5	74	17	50	8	15	13	62	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16314069--16314130	20	3.1	20	78	17	83	12	14	12	59	1.61
16314088--16314138	15	3.5	15	89	2	77	9	13	13	62	1.54
16314180--16314294	17	6.7	16	73	16	88	37	2	4	55	1.34
16314216--16314294	6	13.8	6	70	19	62	41	2	2	53	1.28
16314176--16314294	34	3.4	35	80	4	134	37	3	4	54	1.36
16314892--16314972	3	27.0	3	92	0	126	61	0	1	37	1.04
16316060--16316247	59	3.2	57	79	8	182	35	23	2	38	1.69
16316023--16316304	29	9.6	29	75	12	213	34	25	4	35	1.76
16316032--16316360	59	5.6	59	75	13	177	34	26	4	34	1.78
16324102--16324139	15	2.5	15	86	0	58	13	18	7	60	1.56
16324688--16324717	5	6.0	5	92	0	51	0	20	16	63	1.31
16324683--16324717	15	2.2	17	90	10	56	0	20	17	62	1.32
16323634--16326053	611	4.0	612	92	3	4023	31	19	12	36	1.89
16325302--16325349	5	9.6	5	82	8	53	4	18	12	64	1.43
16323634--16326053	601	4.0	606	92	3	4010	31	19	12	36	1.89
16325913--16325961	15	3.3	15	85	0	62	14	14	8	63	1.52
16325902--16325951	20	2.5	19	78	15	57	12	16	8	64	1.49
16329321--16329374	15	3.6	15	82	5	56	9	18	11	61	1.55
16329321--16329359	5	7.8	5	88	0	51	5	20	12	61	1.50
16329348--16329388	15	2.7	15	92	0	64	14	14	7	63	1.50
16336363--16336418	27	2.1	27	86	0	76	64	10	17	7	1.47
16336384--16336440	22	2.8	20	76	7	60	61	10	15	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16336480--16336655	5	34.2	5	74	8	77	63	18	12	6	1.49
16336472--16336601	27	4.8	27	76	5	136	64	15	10	9	1.49
16336572--16336612	17	2.5	17	80	15	50	73	9	9	7	1.26
16337808--16337875	27	2.5	27	81	13	70	29	0	2	67	1.05
16340174--16340231	25	2.3	25	90	0	89	8	15	12	63	1.50
16340179--16340231	20	2.7	20	88	5	72	9	15	11	64	1.50
16341319--16341373	27	2.0	27	86	6	76	61	16	20	1	1.43
16341331--16341373	22	2.0	22	85	0	59	60	18	18	2	1.47
16345361--16345645	5	54.2	5	67	12	72	62	15	13	8	1.54
16345371--16345413	17	2.5	17	96	0	77	65	11	16	6	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182