genome.fa.s9.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  109  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35455915--35455973	18	3.4	18	67	21	54	23	18	38	18	1.93
35455948--35455986	18	2.2	18	85	0	51	25	20	41	12	1.88
35455984--35456030	15	3.1	15	87	0	67	19	14	38	27	1.91
35466057--35466105	19	2.6	17	77	20	53	42	0	6	51	1.27
35466062--35466105	19	2.3	19	81	11	54	38	0	6	54	1.27
35466553--35466604	15	3.2	15	73	19	50	46	0	0	53	1.00
35466566--35466602	19	1.9	19	88	0	56	51	0	0	48	1.00
35466677--35466734	29	2.0	30	89	3	91	53	1	0	44	1.10
35466677--35466725	16	3.2	16	69	19	50	53	0	0	46	1.00
35466683--35466743	29	2.1	29	84	6	79	55	1	0	42	1.09
35466742--35466799	26	2.4	23	76	20	64	51	0	1	46	1.11
35466745--35466796	26	2.0	26	88	7	79	53	0	1	44	1.11
35473796--35473834	19	2.1	19	95	0	69	38	28	10	23	1.87
35474396--35474704	172	1.8	167	88	4	467	42	8	22	27	1.82
35487782--35487821	21	1.9	21	89	0	62	35	20	17	27	1.95
35489845--35489896	21	2.5	21	93	0	95	42	28	1	26	1.66
35492007--35492039	3	11.0	3	100	0	66	66	0	0	33	0.92
35492138--35492174	13	2.7	14	91	8	67	56	0	37	5	1.22
35493061--35493093	16	2.1	16	100	0	66	45	12	12	30	1.78
35493206--35493400	24	7.9	24	78	6	185	34	15	21	28	1.94
35493321--35493405	28	3.2	28	74	19	99	31	14	21	32	1.93
35493333--35493421	24	3.6	23	76	11	70	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493278--35493421	76	1.9	76	82	2	182	35	14	20	29	1.93
35496316--35496446	24	5.5	24	91	0	208	33	25	17	23	1.96
35498056--35498089	14	2.5	13	86	9	50	58	11	0	29	1.33
35500066--35500118	21	2.5	20	85	11	63	32	28	13	26	1.93
35500807--35500859	24	2.2	24	93	0	88	32	24	20	22	1.98
35503974--35504037	26	2.5	26	87	5	85	31	6	15	46	1.71
35506181--35506228	22	2.2	22	84	0	60	10	4	16	68	1.33
35509589--35509636	23	2.0	24	84	11	64	16	0	27	56	1.41
35518527--35518596	30	2.3	30	90	0	104	31	11	14	42	1.81
35528696--35528743	19	2.4	20	80	13	55	18	12	8	60	1.57
35529714--35529912	42	4.7	43	82	1	224	26	22	20	30	1.98
35529714--35529912	85	2.3	84	80	4	220	26	22	20	30	1.98
35533012--35533061	20	2.5	21	80	9	59	58	10	26	6	1.54
35533868--35534199	40	8.2	41	87	3	469	15	35	19	29	1.92
35533868--35534199	81	4.1	80	87	3	486	15	35	19	29	1.92
35533868--35534199	121	2.7	122	91	2	535	15	35	19	29	1.92
35536703--35536756	26	2.1	26	96	0	99	20	16	7	55	1.65
35536804--35537159	163	2.2	161	88	4	533	25	18	13	42	1.87
35541833--35541891	21	2.8	21	79	5	66	37	23	11	27	1.90
35553874--35553939	33	1.9	36	84	9	93	53	6	31	9	1.57
35554964--35555107	23	6.2	23	84	9	184	12	25	22	40	1.89
35554964--35555102	48	3.0	45	86	8	199	12	24	22	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35554964--35555150	46	4.2	46	80	11	192	12	24	21	41	1.87
35555072--35555146	39	1.9	39	94	0	132	12	21	21	45	1.84
35555111--35555175	23	2.9	23	83	2	87	10	23	18	47	1.79
35560094--35560123	16	1.9	16	93	6	53	60	3	16	20	1.50
35572725--35572766	14	3.0	14	78	21	52	28	0	33	38	1.58
35577992--35578034	22	2.0	22	81	9	52	34	0	13	51	1.42
35588916--35588958	22	2.0	22	81	9	52	34	0	13	51	1.42
35591849--35591889	21	2.0	21	90	4	66	46	0	17	36	1.48
35601290--35601324	11	3.2	11	87	0	52	8	8	0	82	0.83
35601375--35601430	3	18.7	3	96	0	67	25	0	8	66	1.21
35601837--35602345	148	3.4	142	85	9	461	41	4	9	44	1.57
35602250--35602296	21	2.2	22	88	3	69	42	2	4	51	1.33
35603061--35603122	11	5.3	11	77	14	54	40	1	0	58	1.08
35603991--35604023	6	5.5	6	100	0	66	30	0	69	0	0.88
35604096--35604140	23	2.0	23	86	8	65	62	0	0	37	0.96
35604508--35604555	21	2.3	20	85	3	60	22	8	2	66	1.29
35608469--35608513	16	2.8	16	89	0	63	26	22	0	51	1.49
35616719--35617300	200	2.9	200	93	0	950	29	19	20	31	1.97
35619997--35620030	17	2.0	17	94	0	59	20	17	8	52	1.71
35621599--35621679	38	2.1	38	90	0	126	34	24	17	23	1.96
35635403--35635442	20	2.0	20	85	5	53	32	7	12	47	1.69
35635672--35635757	38	2.3	37	82	9	104	31	24	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35635686--35635769	37	2.2	37	83	6	98	29	21	14	34	1.93
35635752--35635812	26	2.3	26	82	0	77	31	19	22	26	1.98
35640407--35640431	12	2.1	12	100	0	50	32	16	16	36	1.90
35645705--35645753	20	2.5	20	82	0	62	30	10	28	30	1.90
35645960--35646013	20	2.7	20	82	0	63	27	7	33	31	1.84
35646482--35646515	17	2.0	17	94	0	59	17	14	11	55	1.68
35647563--35647653	26	3.5	26	82	8	96	29	24	21	24	1.99
35647696--35647769	38	1.9	38	97	0	139	28	20	21	29	1.98
35651265--35651855	101	5.9	101	82	3	676	36	19	18	26	1.94
35651282--35651855	303	1.9	296	85	6	789	36	19	18	25	1.94
35662414--35662517	51	2.0	51	94	0	181	30	10	21	37	1.87
35678201--35678309	45	2.4	45	92	3	175	43	14	8	33	1.76
35687890--35687938	19	2.8	17	82	14	64	14	12	12	61	1.58
35690321--35690472	45	3.4	44	87	1	223	42	15	7	34	1.75
35691458--35691563	30	3.6	30	80	3	117	33	8	16	41	1.79
35691448--35691567	59	2.0	59	83	3	152	31	8	16	43	1.78
35691483--35691614	29	4.6	29	76	5	108	33	8	16	41	1.78
35691573--35691644	29	2.5	30	81	4	85	27	8	22	41	1.82
35693607--35693724	25	4.6	25	71	11	67	26	15	26	32	1.95
35709992--35710065	37	2.0	38	89	2	114	29	31	17	21	1.96
35710096--35710181	37	2.3	38	85	2	111	31	23	12	32	1.92
35710165--35710224	26	2.3	26	91	0	93	30	20	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35711024--35711054	16	1.9	16	93	0	53	22	16	0	61	1.34
35711376--35711427	21	2.5	21	75	6	52	25	13	28	32	1.93
35714947--35716419	491	3.0	491	99	0	2919	33	8	19	38	1.82
35716800--35716932	25	5.2	25	75	11	110	25	16	24	33	1.96
35716798--35716967	50	3.3	50	75	13	157	25	15	24	34	1.95
35718224--35718295	34	2.1	35	86	2	101	48	13	2	34	1.57
35719831--35720237	45	9.1	45	89	0	591	41	16	7	34	1.75
35719831--35720222	179	2.2	180	89	0	597	42	16	6	34	1.75
35730026--35730078	17	3.3	17	68	21	51	15	20	11	52	1.72
35732856--35732955	29	3.4	30	86	5	116	32	9	21	38	1.84
35732879--35732980	29	3.5	28	85	6	123	33	8	16	41	1.80
35732879--35732998	29	4.1	29	82	7	118	32	9	16	41	1.80
35732879--35732998	58	2.1	59	81	7	138	32	9	16	41	1.80
35733905--35733958	26	2.1	26	92	0	90	42	16	12	27	1.85
35734083--35734163	19	4.2	20	73	14	66	61	6	2	29	1.33
35735705--35735768	24	2.6	25	79	18	73	67	0	29	3	1.06
35738493--35738574	20	4.4	19	79	10	89	7	6	20	65	1.39
35738493--35738574	38	2.2	37	86	2	110	7	6	20	65	1.39
35738673--35738768	44	2.2	44	86	3	131	7	3	19	69	1.26
35738677--35738748	32	2.1	35	82	7	87	5	4	20	69	1.26
35738698--35738767	23	3.2	21	82	9	70	5	2	22	68	1.24
35738644--35738754	12	9.6	12	77	5	95	7	4	19	68	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35738708--35738777	20	3.2	21	72	11	52	7	4	22	65	1.35
35738894--35738971	26	2.9	27	71	19	72	32	0	8	58	1.29
35738894--35738967	28	2.7	27	73	19	73	29	0	9	60	1.28
35740491--35740559	28	2.4	28	79	13	79	33	1	4	60	1.25
35740503--35740613	49	2.3	49	78	6	118	32	1	5	60	1.30
35740588--35740641	9	5.8	9	77	14	56	31	0	3	64	1.11
35740591--35740644	18	3.0	18	81	13	67	31	0	5	62	1.18
35740647--35740698	20	2.7	18	74	11	50	21	0	11	67	1.22
35740724--35740759	16	2.2	16	90	0	54	44	2	25	27	1.68
35741031--35741063	17	2.1	16	88	11	50	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182