genome.fa.s9.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  171  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51671579--51671644	29	2.2	29	86	8	87	62	1	1	34	1.14
51671602--51671648	10	4.8	10	75	15	53	59	2	0	38	1.09
51676411--51676543	12	11.2	12	72	7	101	70	15	6	7	1.30
51676382--51676543	24	6.8	24	72	6	114	68	16	6	8	1.36
51676435--51676543	37	3.0	36	83	9	150	71	15	5	7	1.27
51676576--51676627	17	2.7	20	85	14	74	73	15	5	5	1.22
51682052--51682095	22	2.0	21	91	4	70	22	13	0	63	1.29
51685719--51685779	24	2.5	24	86	0	95	31	11	3	54	1.52
51688968--51689034	26	2.6	26	72	25	77	19	14	8	56	1.64
51691884--51692151	138	1.9	139	87	3	398	27	12	13	47	1.78
51694189--51694242	27	2.0	28	88	3	83	3	20	5	70	1.23
51694206--51694248	17	2.6	16	79	17	52	4	16	4	74	1.16
51696756--51697056	153	2.0	153	80	3	338	24	20	18	35	1.95
51697095--51697180	42	2.0	42	97	0	163	27	12	29	30	1.93
51699338--51699371	17	2.1	17	94	5	61	47	2	0	50	1.16
51702504--51702805	153	2.0	153	81	5	351	23	20	18	37	1.94
51707692--51707739	22	2.2	23	81	11	64	52	4	0	43	1.20
51707695--51707743	21	2.3	22	86	6	66	51	4	0	44	1.20
51712226--51712527	153	2.0	153	80	5	342	26	21	17	34	1.96
51718611--51718653	17	2.5	17	88	3	59	53	2	23	20	1.57
51722169--51722320	30	5.0	30	84	6	191	35	4	23	36	1.75
51722169--51722320	60	2.5	60	91	1	232	35	4	23	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51723973--51724032	14	4.5	14	87	12	83	16	16	28	38	1.91
51724078--51724110	17	1.9	17	100	0	66	54	9	0	36	1.32
51724120--51724165	18	2.6	18	82	6	58	50	2	6	41	1.40
51724096--51724150	24	2.3	24	80	0	65	49	3	3	43	1.37
51724080--51724175	42	2.3	41	81	8	106	51	3	4	41	1.37
51724701--51724843	76	1.9	76	89	0	223	32	19	13	33	1.91
51724688--51724997	159	1.9	161	81	7	378	29	20	14	36	1.91
51724866--51725141	69	4.0	68	88	1	390	28	19	16	35	1.93
51747533--51747654	30	4.0	30	84	2	163	36	4	22	37	1.73
51748657--51748719	32	2.0	32	84	6	83	46	3	0	50	1.17
51749306--51749365	14	4.5	14	87	12	83	16	16	28	38	1.91
51749411--51749443	17	1.9	17	100	0	66	54	9	0	36	1.32
51749453--51749498	18	2.6	18	82	6	58	50	2	6	41	1.40
51749429--51749483	24	2.3	24	80	0	65	49	3	3	43	1.37
51749413--51749508	42	2.3	41	81	8	106	51	3	4	41	1.37
51754325--51754366	21	2.0	21	86	9	59	21	26	19	33	1.97
51760492--51760520	3	9.7	3	100	0	58	65	0	0	34	0.93
51761128--51761429	153	2.0	153	81	3	358	24	22	18	35	1.95
51763778--51763830	20	2.4	23	79	20	60	54	5	0	39	1.24
51766932--51767061	69	1.9	69	86	0	188	17	25	23	33	1.97
51767707--51767731	11	2.3	11	100	0	50	8	28	8	56	1.57
51768280--51768313	17	2.0	17	100	0	68	41	23	17	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51769073--51769106	15	2.2	16	89	5	52	61	5	5	26	1.42
51772320--51772382	24	2.6	24	82	0	81	50	7	12	28	1.68
51777144--51777265	30	4.0	30	84	2	163	36	4	22	37	1.73
51778269--51778331	32	2.0	32	84	6	83	46	3	0	50	1.17
51778918--51778977	14	4.5	14	87	12	83	16	16	28	38	1.91
51779023--51779055	17	1.9	17	100	0	66	54	9	0	36	1.32
51779065--51779110	18	2.6	18	82	6	58	50	2	6	41	1.40
51779041--51779095	24	2.3	24	80	0	65	49	3	3	43	1.37
51779025--51779120	42	2.3	41	81	8	106	51	3	4	41	1.37
51783935--51783976	21	2.0	21	86	9	59	21	26	19	33	1.97
51789557--51789585	3	9.7	3	100	0	58	65	0	0	34	0.93
51790193--51790494	153	2.0	153	81	3	358	24	22	18	35	1.95
51792843--51792895	20	2.4	23	79	20	60	54	5	0	39	1.24
51795996--51796125	69	1.9	69	86	0	188	17	25	23	33	1.97
51796771--51796795	11	2.3	11	100	0	50	8	28	8	56	1.57
51797344--51797377	17	2.0	17	100	0	68	41	23	17	17	1.90
51798138--51798171	15	2.2	16	89	5	52	61	5	5	26	1.42
51801378--51801440	24	2.6	24	82	0	81	50	7	12	28	1.68
51804807--51804835	3	9.7	3	100	0	58	65	0	0	34	0.93
51805442--51805743	153	2.0	153	81	3	358	24	22	18	35	1.95
51808091--51808143	20	2.4	23	79	20	60	54	5	0	39	1.24
51811244--51811373	69	1.9	69	86	0	188	17	25	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51812019--51812043	11	2.3	11	100	0	50	8	28	8	56	1.57
51812592--51812625	17	2.0	17	100	0	68	41	23	17	17	1.90
51813386--51813419	15	2.2	16	89	5	52	61	5	5	26	1.42
51816627--51816689	24	2.6	24	82	0	81	50	7	12	28	1.68
51821486--51821514	14	2.0	15	93	6	51	48	0	24	27	1.51
51832353--51832382	14	2.1	15	93	6	53	46	0	26	26	1.53
51840233--51840263	14	2.1	15	94	5	55	48	0	25	25	1.52
51851147--51851177	14	2.1	15	94	5	55	48	0	25	25	1.52
51853175--51853200	9	2.9	9	100	0	52	46	23	0	30	1.53
51859223--51859265	2	21.5	2	100	0	86	48	0	0	51	1.00
51862047--51862090	9	4.8	9	83	5	61	61	0	2	36	1.09
51862055--51862091	19	1.9	19	94	0	65	56	0	2	40	1.13
51870003--51870068	23	2.9	23	77	4	71	43	19	7	28	1.78
51873209--51873270	24	2.4	25	82	17	65	56	3	0	40	1.15
51873561--51873586	3	8.7	3	100	0	52	30	0	0	69	0.89
51881242--51881280	21	1.9	21	89	5	62	61	2	2	33	1.23
51883014--51883626	161	3.8	159	84	4	693	24	18	22	34	1.96
51885404--51885441	19	2.0	20	84	5	51	42	2	0	55	1.14
51885519--51885550	13	2.5	13	94	0	55	37	15	3	43	1.63
51888462--51888490	6	4.8	6	100	0	58	86	0	0	13	0.58
51888591--51888647	30	1.9	30	82	10	73	43	7	5	43	1.54
51892389--51892433	22	2.0	22	86	8	63	80	0	13	6	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51892413--51892450	17	2.2	18	90	4	60	81	0	10	7	0.87
51892406--51892452	18	2.6	17	83	12	58	82	0	8	8	0.83
51893158--51893186	1	29.0	1	100	0	58	0	100	0	0	0.00
51901174--51901241	30	2.2	31	92	2	111	23	5	14	55	1.61
51901202--51901342	62	2.3	61	82	4	160	25	11	10	52	1.69
51901226--51901342	62	1.9	62	87	3	173	23	11	9	54	1.66
51901480--51901592	60	1.9	60	83	7	151	48	11	14	25	1.77
51906043--51906078	17	2.1	17	89	0	54	55	2	2	38	1.29
51906038--51906079	17	2.3	19	76	16	52	59	2	2	35	1.23
51906109--51906158	22	2.4	20	78	12	55	64	10	0	26	1.25
51906417--51906443	13	2.1	13	100	0	54	14	0	0	85	0.61
51909997--51910258	87	3.0	87	88	1	400	45	4	9	40	1.57
51912456--51912514	29	2.0	30	90	3	93	57	10	6	25	1.56
51913797--51913849	21	2.6	21	73	8	56	64	1	1	32	1.15
51914337--51914371	18	1.9	18	100	0	70	40	34	0	25	1.56
51916627--51916658	14	2.2	15	94	5	57	50	6	6	37	1.53
51916624--51916659	14	2.6	13	87	12	54	44	5	8	41	1.58
51917004--51917064	23	2.6	23	78	17	63	49	0	3	47	1.18
51919388--51919415	12	2.3	12	100	0	56	50	0	0	50	1.00
51921033--51921073	21	1.9	21	85	5	55	56	0	4	39	1.21
51921230--51921294	31	2.1	31	88	0	94	56	1	1	40	1.18
51929064--51929106	19	2.2	20	84	8	54	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51933314--51933398	23	3.6	23	87	3	116	14	24	18	42	1.88
51936803--51936836	17	2.0	17	88	11	52	38	0	5	55	1.24
51936803--51936839	15	2.3	17	86	9	51	40	0	5	54	1.24
51940913--51940951	17	2.3	17	100	0	78	35	5	23	35	1.77
51945161--51945251	44	2.1	44	89	4	139	42	7	4	45	1.52
51945376--51945417	15	2.9	15	75	3	50	59	0	4	35	1.19
51946309--51946350	12	3.6	12	74	6	50	69	0	0	30	0.89
51946310--51946356	23	2.0	23	100	0	94	59	0	0	40	0.97
51948473--51948663	92	2.1	92	97	0	364	36	17	13	32	1.89
51951149--51951639	161	3.0	161	96	1	883	41	6	6	45	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182