genome.fa.s9.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  170  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51372749--51372778	16	1.9	16	93	6	53	13	13	3	70	1.30
51372745--51372804	21	2.8	22	85	7	70	13	10	3	73	1.21
51373177--51373515	57	5.8	61	73	13	167	37	3	23	35	1.73
51373200--51373571	29	12.8	30	75	11	265	36	3	23	37	1.71
51375725--51375761	18	2.1	18	100	0	74	40	10	21	27	1.86
51379625--51379686	27	2.3	25	83	10	70	56	6	3	33	1.41
51379623--51379685	26	2.4	25	82	12	74	55	6	4	33	1.46
51380689--51380742	27	2.0	27	82	7	65	40	12	22	24	1.89
51383463--51383863	59	6.8	58	78	8	271	32	2	26	37	1.72
51383513--51383859	30	11.8	29	74	9	256	33	2	25	38	1.68
51389462--51389489	12	2.3	12	100	0	56	50	7	7	35	1.57
51391796--51391841	23	2.0	23	95	0	83	50	8	8	32	1.64
51394976--51395018	23	1.9	23	85	4	61	4	16	11	67	1.38
51406631--51406833	29	7.0	29	83	7	191	36	2	27	33	1.72
51406647--51406833	58	3.2	57	80	8	216	36	2	26	34	1.71
51406571--51406833	87	3.0	87	79	9	261	36	4	26	31	1.78
51409683--51409885	49	4.2	47	69	9	131	14	26	19	39	1.90
51409731--51409937	49	4.2	49	78	4	213	17	26	16	39	1.91
51409662--51409885	97	2.3	97	90	0	340	15	26	19	38	1.91
51411943--51412110	92	1.8	92	80	5	205	32	14	17	35	1.90
51416858--51417050	99	2.0	98	82	3	235	39	2	18	39	1.63
51417153--51417299	23	6.3	23	80	6	154	11	25	19	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51417831--51418047	92	2.4	90	81	8	226	34	14	17	34	1.90
51417831--51418082	90	2.8	89	77	11	224	32	13	17	36	1.89
51420963--51421040	28	2.8	28	94	0	129	33	8	29	28	1.87
51421115--51421243	29	4.5	28	74	4	105	37	1	25	34	1.66
51420998--51421242	58	4.2	60	77	7	213	36	3	26	33	1.73
51421084--51421303	29	7.5	30	70	14	102	38	3	24	33	1.71
51421026--51421316	116	2.5	118	78	10	294	37	3	25	34	1.72
51423121--51423190	6	11.8	6	79	8	81	54	1	0	44	1.09
51423129--51423209	17	4.6	17	83	10	92	55	3	0	40	1.17
51425765--51425899	40	3.4	38	73	12	96	30	28	20	21	1.98
51425797--51425900	37	2.7	38	76	5	93	31	26	19	22	1.97
51426186--51426231	22	2.1	22	95	0	83	34	17	4	43	1.69
51438427--51438584	80	2.0	80	94	0	280	51	13	13	21	1.75
51442318--51442555	72	3.3	71	91	2	370	35	19	13	31	1.91
51445742--51445877	30	4.6	30	72	5	98	44	7	14	33	1.73
51445869--51445909	20	2.1	20	90	4	66	43	17	4	34	1.70
51448640--51448686	8	6.0	8	76	14	53	27	0	0	72	0.85
51448640--51448684	15	3.0	16	84	9	60	28	0	0	71	0.87
51448642--51448686	24	1.9	24	90	4	74	26	0	0	73	0.84
51449634--51449659	10	2.6	10	100	0	52	19	15	11	53	1.71
51453234--51453354	6	21.2	6	71	13	85	50	4	1	43	1.31
51453273--51453348	17	4.5	17	77	11	75	50	3	1	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51453234--51453349	17	6.5	16	70	20	70	50	4	1	43	1.32
51460766--51460808	19	2.3	19	84	8	52	58	4	0	37	1.19
51462327--51462381	24	2.4	22	80	17	67	78	1	3	16	0.98
51466638--51466680	19	2.3	19	84	8	52	58	4	0	37	1.19
51471153--51471300	51	2.9	51	76	13	135	37	5	3	54	1.40
51485720--51485754	11	2.9	12	84	16	54	25	42	14	17	1.86
51485720--51485754	13	2.8	13	87	12	56	25	42	14	17	1.86
51485756--51485784	14	2.1	14	93	6	51	13	20	20	44	1.85
51486942--51486971	13	2.3	13	94	0	51	23	3	0	73	0.98
51489458--51489490	16	2.1	16	100	0	66	57	6	0	36	1.23
51491226--51491275	20	2.5	20	75	15	57	12	22	28	38	1.89
51493997--51494062	32	2.1	32	88	0	96	40	24	3	31	1.70
51499599--51499698	29	3.4	30	77	10	116	22	17	13	48	1.81
51499599--51499726	60	2.2	57	85	12	163	21	16	12	49	1.79
51499974--51500078	31	3.4	31	74	12	117	44	10	19	25	1.82
51499977--51500090	31	3.7	30	74	13	106	45	12	16	25	1.82
51501551--51501595	24	1.9	24	90	4	74	46	2	6	44	1.42
51507758--51507877	55	2.2	55	85	4	154	41	5	3	49	1.43
51508092--51508485	137	2.9	138	79	7	426	29	29	11	30	1.92
51509926--51509955	6	5.0	6	100	0	60	33	0	0	66	0.92
51512358--51512786	29	14.8	29	66	24	133	34	28	3	33	1.74
51512417--51512786	58	6.4	59	85	3	493	34	29	2	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51512420--51512781	29	12.5	29	68	19	195	34	28	1	34	1.69
51517465--51517699	60	3.9	60	88	2	337	34	20	11	32	1.89
51517605--51517697	28	3.2	28	63	11	69	34	20	11	33	1.89
51531297--51531339	21	2.0	21	86	0	59	39	30	6	23	1.81
51533668--51533708	17	2.4	17	100	0	82	29	19	26	24	1.98
51535022--51535081	22	2.7	22	80	10	70	61	13	16	8	1.55
51541203--51541282	11	7.1	11	83	8	65	38	1	2	57	1.20
51541205--51541259	17	3.2	17	84	7	67	38	1	3	56	1.28
51541205--51541283	6	13.8	6	70	15	60	39	1	2	56	1.21
51544619--51544988	59	6.3	58	78	10	310	33	28	3	34	1.73
51544709--51544871	30	5.5	30	68	25	98	31	27	3	38	1.72
51544609--51544892	29	9.7	29	71	19	157	34	28	2	34	1.72
51544678--51544964	59	4.8	60	82	7	354	31	29	3	35	1.74
51544678--51544964	117	2.4	118	84	5	391	31	29	3	35	1.74
51544614--51545019	29	13.8	30	67	24	131	34	27	3	34	1.75
51544678--51544998	117	2.7	117	82	7	389	31	28	3	35	1.75
51546488--51546599	29	3.8	28	71	13	82	29	23	1	45	1.63
51546489--51546794	59	5.3	58	81	10	306	30	25	3	40	1.74
51546547--51546766	29	7.7	30	68	15	108	30	25	4	40	1.74
51554227--51554367	72	2.0	72	84	2	185	31	13	17	37	1.88
51555832--51555860	15	2.0	15	93	6	51	41	3	41	13	1.62
51562368--51562400	17	1.9	17	88	11	50	45	21	6	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51562907--51562971	21	3.2	20	74	12	60	33	13	21	30	1.92
51565517--51565559	18	2.5	17	88	7	61	65	6	0	27	1.18
51578061--51578290	30	7.7	30	75	14	203	37	3	22	37	1.70
51578061--51578290	60	3.9	60	84	4	297	37	3	22	37	1.70
51578061--51578279	118	1.9	117	89	2	341	36	3	22	36	1.71
51580134--51580263	35	3.7	33	84	10	154	54	3	1	40	1.28
51580134--51580263	17	7.5	17	82	7	154	54	3	1	40	1.28
51580129--51580235	6	18.2	6	73	13	80	53	2	1	42	1.26
51590497--51590585	9	9.8	9	67	18	51	41	0	1	57	1.06
51590497--51590613	20	6.4	18	73	20	75	37	0	4	58	1.18
51599534--51599665	31	4.1	31	75	14	115	55	2	3	39	1.28
51599537--51599665	37	3.8	36	74	15	100	55	2	3	39	1.29
51599561--51599654	21	4.2	21	69	21	66	53	2	4	40	1.32
51605771--51605826	23	2.4	23	84	0	85	28	14	21	35	1.92
51606821--51606866	20	2.4	19	85	10	58	30	0	8	60	1.26
51606809--51606867	20	3.1	19	76	11	57	33	0	6	59	1.24
51607393--51607436	23	1.9	23	86	9	63	40	6	0	52	1.28
51616584--51616672	40	2.2	40	89	0	133	31	13	17	37	1.89
51619627--51619767	73	1.9	72	89	1	219	36	19	12	32	1.88
51628673--51628710	15	2.5	15	86	0	58	52	0	0	47	1.00
51629978--51630058	29	2.7	31	79	9	78	49	14	3	32	1.61
51635585--51635627	18	2.4	18	88	7	61	16	2	2	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51635980--51636021	20	2.0	21	86	4	59	9	11	9	69	1.38
51647564--51647602	12	3.2	12	81	3	51	41	15	35	7	1.76
51647843--51647867	12	2.1	12	100	0	50	56	0	8	36	1.29
51650798--51650869	30	2.4	31	86	6	94	45	19	15	19	1.85
51654064--51654325	138	1.9	138	85	6	361	37	21	22	18	1.94
51654040--51654347	69	4.5	69	78	7	313	36	21	22	19	1.95
51654040--51654347	138	2.2	138	79	7	358	36	21	22	19	1.95
51654422--51657123	120	22.5	120	89	1	3741	34	20	25	19	1.96
51658981--51659018	2	19.0	2	100	0	76	50	0	0	50	1.00
51669831--51669867	15	2.5	15	86	0	56	27	29	8	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182