genome.fa.s9.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  137  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42859903--42859932	14	2.1	15	93	6	53	40	13	0	46	1.43
42864508--42864584	17	4.6	17	77	19	90	41	12	11	33	1.80
42865275--42865321	22	2.1	22	84	7	60	34	0	14	51	1.43
42873381--42873413	17	2.0	17	88	5	50	42	0	0	57	0.98
42874515--42874539	13	1.9	13	100	0	50	32	0	16	52	1.44
42874825--42874872	3	16.3	3	95	4	89	68	0	0	31	0.90
42881187--42881295	54	2.0	54	100	0	218	36	18	12	32	1.89
42884413--42884533	34	3.6	34	89	2	172	38	33	11	16	1.85
42886732--42886764	2	17.5	2	87	12	52	54	0	0	45	0.99
42886732--42886764	11	3.1	11	95	4	59	54	0	0	45	0.99
42894350--42894381	12	2.6	12	95	5	55	9	40	0	50	1.35
42899007--42899052	23	2.1	21	88	8	65	69	15	6	8	1.34
42899221--42899415	29	6.7	29	75	9	146	33	8	23	34	1.85
42899381--42899448	33	2.1	33	86	5	93	29	7	19	44	1.77
42900704--42900912	30	7.0	30	75	10	153	33	6	22	36	1.80
42901031--42901079	23	2.1	23	85	7	64	73	10	2	14	1.18
42901948--42902006	23	2.6	23	83	5	75	44	0	0	55	0.99
42901966--42902029	31	2.1	30	88	2	92	46	1	0	51	1.10
42907922--42907956	17	2.0	17	88	5	52	34	0	0	65	0.93
42911188--42911501	32	9.8	32	80	3	247	29	16	16	37	1.90
42911190--42911501	64	4.9	64	80	5	274	30	16	16	37	1.90
42911188--42911501	96	3.3	96	79	5	330	29	16	16	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42912285--42912322	20	2.0	20	89	5	60	23	2	13	60	1.45
42916932--42917031	13	7.5	13	78	13	53	39	22	22	17	1.93
42916942--42917031	7	13.4	7	70	20	59	37	23	22	16	1.93
42916941--42917027	13	6.5	13	76	16	54	37	22	22	16	1.93
42916941--42917002	27	2.3	26	81	8	79	38	22	22	16	1.92
42916942--42917019	20	4.0	20	82	9	72	39	21	21	16	1.92
42917133--42917197	26	2.5	26	68	9	60	23	3	27	46	1.67
42917555--42917629	12	6.5	11	76	13	62	72	0	25	2	0.98
42917555--42917627	23	3.2	23	75	12	78	72	0	24	2	0.98
42919446--42919481	18	2.0	18	88	0	54	61	0	27	11	1.30
42919491--42919557	32	2.2	30	81	7	82	50	1	1	46	1.19
42921283--42921365	24	3.5	24	84	0	112	53	8	10	27	1.65
42922954--42923011	24	2.4	25	77	8	66	48	10	13	27	1.75
42923943--42923979	14	2.6	14	100	0	74	27	5	8	59	1.48
42924638--42924680	9	4.6	9	82	8	50	62	2	0	34	1.08
42924638--42924680	19	2.3	18	80	11	50	62	2	0	34	1.08
42927057--42927102	14	3.2	14	78	6	56	69	2	2	26	1.11
42928486--42928514	12	2.3	13	94	5	51	44	0	0	55	0.99
42931262--42931329	31	2.2	31	81	2	84	36	8	13	41	1.75
42932643--42932768	27	4.4	30	77	14	110	30	11	11	47	1.74
42932643--42932768	29	4.4	29	78	14	122	30	11	11	47	1.74
42949376--42949421	19	2.4	19	85	3	56	0	63	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42949379--42949414	6	6.0	6	96	0	54	0	61	0	38	0.96
42950476--42950525	25	2.1	23	85	7	64	24	10	6	60	1.51
42960436--42960469	5	6.8	5	96	0	59	20	2	20	55	1.56
42968167--42968209	22	2.0	21	86	4	59	9	13	4	72	1.26
42976489--42976526	3	12.7	3	100	0	76	34	0	0	65	0.93
42978580--42978740	28	5.9	28	79	7	143	44	12	11	31	1.77
42978645--42978725	14	5.8	14	76	2	65	39	12	12	35	1.81
42978847--42978935	37	2.4	37	80	0	106	31	15	24	28	1.96
42980709--42980938	115	2.0	115	90	0	361	33	16	19	30	1.94
42981541--42981565	1	25.0	1	100	0	50	0	100	0	0	0.00
42981877--42981930	17	3.3	16	80	12	56	40	3	0	55	1.17
42982493--42982525	17	1.9	17	88	11	50	39	3	0	57	1.14
42982600--42982646	8	5.1	9	80	19	53	34	2	0	63	1.06
42982613--42982649	18	2.2	18	90	9	60	35	0	0	64	0.94
42982605--42982661	27	2.1	28	83	9	73	38	0	0	61	0.96
42982998--42983168	86	2.0	85	87	6	249	38	11	21	29	1.88
42985747--42985783	12	3.1	12	92	0	65	21	24	0	54	1.45
42985930--42985971	22	1.9	22	100	0	84	33	16	4	45	1.69
42988366--42988394	15	1.9	15	100	0	58	34	20	10	34	1.87
42997710--42997743	14	2.3	14	90	10	50	41	0	2	55	1.15
43001044--43001113	18	3.7	18	76	14	68	31	2	1	64	1.17
43001085--43001125	18	2.3	19	83	8	50	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43002055--43002108	21	2.6	21	76	5	56	31	27	12	27	1.93
43002803--43002945	42	3.4	41	78	5	135	27	27	10	33	1.90
43006907--43006983	31	2.4	31	79	12	77	55	2	1	40	1.22
43020659--43020725	32	2.0	33	91	5	109	49	0	4	46	1.22
43020694--43020832	68	2.0	68	84	0	179	51	5	5	38	1.48
43030771--43030837	32	2.1	32	88	5	100	44	4	0	50	1.22
43033697--43033751	24	2.3	24	93	0	92	20	16	34	29	1.94
43034541--43034595	24	2.3	24	93	0	92	29	34	16	20	1.94
43037452--43037513	32	1.9	32	90	6	99	53	0	3	43	1.17
43057793--43057852	17	3.4	17	71	24	61	46	11	1	40	1.50
43058796--43058851	15	3.8	16	75	17	59	21	8	0	69	1.15
43058801--43058851	14	3.5	15	77	17	54	23	5	0	70	1.09
43061201--43061258	30	1.9	31	96	3	109	55	3	0	41	1.17
43068865--43068917	23	2.4	22	87	6	72	37	1	1	58	1.20
43070055--43070113	23	2.6	23	69	0	64	16	28	11	42	1.84
43071131--43071183	15	3.5	15	82	14	65	28	1	0	69	0.99
43073360--43073627	131	2.1	130	94	0	464	39	10	17	32	1.84
43074815--43074858	23	1.9	23	90	0	70	36	6	34	22	1.81
43076056--43076091	16	2.2	17	90	5	56	41	8	0	50	1.33
43077207--43077267	32	1.9	32	89	0	95	54	3	1	40	1.27
43077549--43077574	12	2.2	12	100	0	52	69	7	0	23	1.14
43082730--43082888	34	4.8	34	77	15	156	46	13	2	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43085637--43085672	15	2.5	14	82	8	54	69	8	0	22	1.15
43086230--43086304	12	6.6	12	68	11	50	69	20	2	8	1.26
43086213--43086316	20	5.1	20	74	13	68	69	20	1	8	1.25
43086283--43086338	22	2.7	20	83	10	60	71	21	3	3	1.17
43086307--43086386	34	2.3	34	87	8	117	68	23	5	2	1.21
43086301--43086383	33	2.5	34	88	9	127	69	22	4	2	1.19
43088353--43088412	21	2.9	20	72	18	52	61	3	1	33	1.22
43088397--43088438	9	4.6	9	82	14	50	71	0	0	28	0.86
43088405--43088438	16	2.1	17	94	5	61	73	0	0	26	0.83
43090681--43090711	3	10.3	3	100	0	62	35	0	32	32	1.58
43095365--43095547	29	6.3	29	72	16	94	34	8	21	34	1.85
43095396--43095604	88	2.4	87	83	7	253	35	6	22	35	1.80
43095540--43095784	57	4.3	57	79	10	234	36	2	25	36	1.68
43095504--43095818	29	10.9	29	68	17	151	36	2	26	34	1.71
43095586--43095886	30	10.4	30	68	17	120	36	3	25	33	1.73
43097084--43097124	11	3.8	11	96	3	75	36	0	0	63	0.95
43097067--43097124	22	2.7	23	84	10	77	39	0	0	60	0.97
43097821--43097928	17	6.4	17	76	5	103	52	5	1	39	1.35
43097821--43097915	50	1.9	50	82	0	118	50	6	2	41	1.39
43098234--43098403	86	2.0	86	91	2	279	24	24	17	33	1.96
43098331--43098452	49	2.5	49	97	0	226	24	27	15	31	1.96
43098245--43098488	135	1.8	135	90	1	391	25	25	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43098380--43098776	209	1.9	208	90	1	625	23	23	17	34	1.96
43110284--43110481	28	7.0	28	77	15	144	35	1	27	34	1.67
43110286--43110448	29	5.8	28	77	14	124	37	1	25	35	1.64
43110286--43110482	86	2.3	83	82	9	236	36	1	27	35	1.66
43111054--43111120	29	2.3	29	82	12	93	37	11	23	26	1.90
43111155--43111547	29	13.5	29	69	18	114	37	3	25	32	1.73
43111243--43111314	31	2.4	30	85	2	99	44	1	19	34	1.59
43111304--43111422	27	4.2	29	77	13	106	34	3	28	33	1.74
43111577--43111684	29	3.6	30	77	8	105	37	4	22	36	1.75
43112878--43112928	10	5.0	10	83	9	68	37	1	0	60	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182