genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  112  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36507470--36507688	59	3.7	59	90	1	325	31	26	4	37	1.77
36507538--36507688	29	5.1	30	68	22	106	31	25	3	39	1.74
36512418--36512460	22	2.0	22	86	4	61	55	0	0	44	0.99
36513538--36513649	30	3.8	29	74	9	93	32	6	5	56	1.47
36513545--36513641	30	3.3	29	79	5	97	29	6	6	57	1.48
36513540--36513651	29	3.8	29	76	7	109	33	5	5	56	1.45
36518102--36518139	19	1.9	19	85	15	51	50	5	2	42	1.39
36518573--36518700	58	2.2	58	87	5	179	50	1	0	46	1.16
36518573--36518732	58	2.8	55	78	14	155	51	1	2	45	1.22
36525444--36525490	13	3.5	13	77	11	51	63	2	0	34	1.06
36526394--36526441	25	1.9	25	83	8	62	52	2	20	25	1.58
36526931--36526974	21	2.1	21	91	0	70	11	31	25	31	1.91
36528644--36528710	25	2.7	25	77	11	75	32	4	2	59	1.32
36539265--36539316	27	2.0	27	85	11	72	25	5	30	38	1.79
36543250--36543278	6	4.8	6	100	0	58	51	13	0	34	1.42
36543374--36543513	30	4.7	30	76	5	113	41	7	15	35	1.76
36543374--36543485	30	3.8	29	80	5	118	41	8	15	34	1.76
36543371--36543513	59	2.4	60	81	8	166	41	7	14	35	1.75
36543474--36543536	30	2.1	30	84	0	81	41	4	17	36	1.71
36544601--36544642	3	14.7	3	80	9	52	71	0	0	28	0.86
36544600--36544644	8	5.4	8	86	7	63	73	0	0	26	0.84
36545152--36545247	37	2.5	38	77	15	101	60	1	2	36	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36545126--36545280	9	16.8	9	71	18	79	64	1	1	32	1.10
36545245--36545282	10	3.9	10	82	6	51	65	2	0	31	1.06
36554204--36554241	15	2.5	15	83	8	51	31	7	0	60	1.25
36554315--36554352	14	2.9	13	85	11	51	71	0	0	28	0.87
36554691--36554907	30	7.3	30	76	9	178	36	3	24	35	1.72
36554690--36554907	60	3.6	59	77	9	201	36	3	24	36	1.72
36554691--36554890	90	2.2	89	82	9	230	36	3	24	37	1.71
36556995--36557066	37	1.9	37	88	0	108	26	22	16	34	1.95
36556881--36557351	161	2.9	160	81	10	507	25	21	16	37	1.93
36557088--36557439	161	2.2	161	89	0	533	25	20	17	37	1.94
36557204--36558026	209	4.0	203	79	7	609	23	20	17	38	1.93
36557317--36557479	85	1.9	85	82	0	200	22	22	16	39	1.92
36557526--36557688	85	1.9	85	83	2	211	23	22	14	39	1.91
36557819--36558103	123	2.3	122	84	1	372	22	20	17	39	1.92
36565225--36565269	19	2.4	19	81	7	56	37	2	4	55	1.32
36566068--36566097	16	1.9	16	93	6	53	16	13	0	70	1.18
36566064--36566105	16	2.6	16	77	7	50	16	9	0	73	1.08
36568244--36568462	30	7.4	29	77	12	173	36	2	24	36	1.68
36568266--36568475	30	7.1	30	78	13	195	36	2	25	36	1.69
36568266--36568462	59	3.3	58	82	10	181	36	2	24	37	1.67
36569963--36569997	16	2.2	16	90	5	54	57	0	0	42	0.99
36570862--36570915	24	2.2	24	93	0	90	9	18	44	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36570928--36570959	6	5.3	6	96	0	55	34	12	34	18	1.89
36573784--36573843	29	2.1	29	87	0	84	38	25	18	18	1.93
36579875--36580225	119	2.9	119	90	0	524	35	28	10	25	1.89
36583335--36583385	21	2.4	21	86	0	66	31	25	15	27	1.96
36587942--36587971	14	2.2	14	94	5	53	30	23	10	36	1.87
36615215--36615312	26	3.8	26	76	0	97	25	19	23	31	1.98
36616930--36617094	30	5.6	30	80	6	158	35	21	4	37	1.75
36617041--36617138	29	3.3	30	77	9	78	29	20	3	46	1.65
36618945--36619003	21	2.8	21	84	7	75	30	25	16	27	1.97
36619289--36619368	37	2.2	37	88	0	115	26	30	18	25	1.98
36622697--36622762	17	3.9	17	71	0	51	18	22	10	48	1.78
36623860--36623952	38	2.5	37	81	5	107	34	22	12	30	1.92
36623879--36623950	38	1.9	37	91	2	117	34	20	13	30	1.92
36625791--36625849	21	2.8	21	78	0	64	35	23	15	25	1.94
36631806--36631885	21	3.8	21	80	3	81	21	21	40	17	1.92
36631797--36631883	42	2.1	42	82	4	104	24	20	37	17	1.93
36631825--36631893	21	3.3	21	73	15	61	20	23	40	15	1.91
36639140--36639251	59	1.9	59	83	5	145	48	14	15	22	1.80
36639202--36639340	32	4.5	31	74	14	110	46	11	17	24	1.82
36639552--36639603	26	2.0	26	84	0	68	38	5	21	34	1.77
36642014--36642064	27	1.9	26	88	4	75	37	1	7	52	1.42
36643131--36643194	34	1.9	34	90	3	103	37	7	15	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36645334--36645397	15	4.2	15	73	11	67	54	1	1	42	1.19
36645365--36645432	24	2.8	22	75	16	64	58	1	1	38	1.16
36645429--36645563	61	2.2	60	85	5	173	42	2	3	51	1.32
36645568--36645592	3	8.3	3	100	0	50	64	0	0	36	0.94
36648604--36648637	17	2.0	17	100	0	68	52	29	0	17	1.45
36649190--36649273	25	3.3	25	76	15	100	25	30	23	20	1.98
36649202--36649282	26	3.2	26	75	16	96	24	30	20	23	1.99
36649186--36649328	51	2.8	51	88	2	198	29	27	19	23	1.98
36650305--36650341	19	1.9	19	88	0	56	37	21	24	16	1.93
36673401--36673440	22	1.9	20	90	10	62	22	0	7	70	1.12
36673490--36673820	143	2.3	143	83	5	388	54	9	11	23	1.65
36675817--36675858	16	2.7	16	78	17	52	47	4	4	42	1.45
36682359--36682397	17	2.3	17	86	0	51	48	25	10	15	1.76
36691326--36691391	17	3.9	17	83	0	78	18	19	12	50	1.78
36692405--36692484	37	2.2	37	83	0	97	25	30	18	26	1.98
36692462--36692601	37	3.7	37	76	7	122	32	23	14	30	1.94
36698230--36698263	13	2.5	14	90	4	52	17	2	8	70	1.25
36701982--36702367	193	2.0	193	97	0	727	36	18	18	26	1.94
36707387--36707434	16	2.9	16	80	14	62	6	20	0	72	1.05
36707395--36707433	17	2.3	17	86	8	53	5	20	0	74	1.01
36709454--36709572	65	1.9	62	81	8	141	21	9	3	65	1.36
36717429--36717459	11	2.8	11	95	0	53	16	32	38	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36718150--36718271	59	2.1	59	86	6	176	33	26	2	37	1.70
36731913--36731970	21	2.8	21	78	5	64	31	15	20	32	1.94
36734371--36734400	14	2.1	14	93	0	51	20	6	3	70	1.25
36741073--36741102	14	2.1	14	93	0	51	20	6	3	70	1.25
36749096--36749142	19	2.5	19	92	0	76	59	10	14	14	1.61
36749590--36749622	14	2.4	14	85	14	50	0	21	0	78	0.75
36749586--36749621	18	1.9	19	88	5	56	0	22	0	77	0.76
36755695--36755756	21	3.2	21	65	25	55	59	8	11	20	1.57
36755699--36755760	19	3.3	19	68	13	56	59	9	11	19	1.58
36757327--36757427	36	2.8	36	82	4	134	22	24	15	36	1.94
36764334--36764383	26	1.9	26	87	0	73	28	24	20	28	1.99
36766143--36766235	36	2.6	36	86	5	118	26	24	11	36	1.90
36772153--36772227	39	1.9	39	91	0	123	29	22	10	37	1.88
36773721--36773797	21	3.7	21	78	0	82	32	27	11	28	1.92
36774462--36774553	36	2.6	35	87	3	148	26	28	10	34	1.90
36775630--36775679	20	2.5	20	81	15	50	42	14	0	44	1.44
36776542--36776626	29	2.9	29	89	0	134	24	20	14	41	1.89
36776630--36776686	29	2.0	29	89	0	87	28	12	17	42	1.85
36788449--36788492	23	1.9	23	81	9	54	61	4	0	34	1.16
36792925--36792993	24	2.9	24	93	0	120	57	7	10	24	1.56
36796925--36796973	2	24.5	2	100	0	98	0	48	0	51	1.00
36798044--36798077	3	11.3	3	93	0	59	35	2	32	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36798044--36798087	9	4.9	9	88	0	52	31	4	36	27	1.77
36803623--36803686	29	2.2	29	85	0	83	21	40	23	14	1.90
36805842--36805889	10	4.9	10	84	5	53	47	4	2	45	1.33
36807092--36807317	41	5.3	43	81	5	246	36	17	19	27	1.94
36808900--36808944	15	3.0	15	86	0	54	46	0	8	44	1.34
36815802--36815858	15	3.6	16	82	15	73	70	0	0	29	0.88
36818525--36818589	28	2.3	28	72	2	67	60	0	9	30	1.28
36818593--36818705	59	1.9	60	90	1	183	59	2	7	30	1.38
36818645--36818774	48	2.6	47	86	7	161	56	2	9	32	1.44
36818645--36818773	49	2.8	48	87	5	167	56	2	8	32	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182