genome.fa.s9.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  118  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38156821--38156874	20	2.7	20	91	0	81	27	3	35	33	1.75
38158625--38158665	17	2.4	17	83	0	55	17	21	12	48	1.79
38162982--38163055	32	2.3	32	92	0	121	29	9	24	36	1.87
38170243--38170272	15	2.0	15	93	0	51	50	3	6	40	1.45
38172063--38172345	40	7.0	40	81	9	326	25	15	26	31	1.96
38172063--38172345	82	3.5	79	83	9	340	25	15	26	31	1.96
38172086--38172343	39	6.4	40	78	11	246	26	15	27	31	1.96
38173603--38173657	27	2.0	27	96	0	101	14	12	14	58	1.64
38181112--38181166	24	2.3	23	78	9	65	61	0	34	3	1.13
38181121--38181156	15	2.4	15	90	0	54	66	0	33	0	0.92
38184329--38184686	49	7.3	49	84	1	414	22	26	14	36	1.93
38185812--38185920	54	2.0	54	92	0	182	37	26	11	23	1.90
38186491--38186544	26	2.1	26	89	0	81	31	24	16	27	1.96
38186653--38186722	37	1.9	37	85	2	97	25	17	27	30	1.97
38190238--38190268	16	1.9	16	93	0	53	61	0	16	22	1.34
38191099--38191153	26	2.2	26	93	3	94	23	21	18	36	1.95
38204471--38204521	23	2.2	24	82	10	61	27	25	0	47	1.53
38210358--38210396	6	6.5	6	87	0	51	23	30	0	46	1.53
38218141--38218188	20	2.4	20	73	10	53	20	12	14	52	1.74
38218151--38218323	68	2.5	68	91	0	274	21	13	10	54	1.69
38218211--38218255	21	2.2	21	92	4	74	22	15	8	53	1.69
38218275--38218327	20	2.5	22	76	14	67	20	11	11	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38218887--38219474	100	5.9	100	86	2	709	37	18	19	24	1.94
38218959--38219125	53	3.3	53	66	11	150	35	19	21	23	1.95
38218948--38219103	46	3.1	51	63	12	133	39	18	19	22	1.93
38220049--38220104	28	2.0	28	89	0	85	48	35	5	10	1.61
38221202--38221274	30	2.4	30	82	8	78	24	8	4	63	1.40
38221368--38221554	4	45.8	4	65	22	52	21	4	4	69	1.25
38221377--38221556	15	11.7	15	66	23	58	21	5	4	69	1.25
38221368--38221425	26	2.2	27	81	9	66	22	3	5	68	1.24
38221377--38221514	60	2.3	60	80	7	156	21	5	5	68	1.31
38221452--38221551	51	2.0	49	82	7	121	22	3	3	72	1.13
38221435--38221550	28	4.0	27	70	15	81	21	3	3	71	1.16
38221676--38221732	29	2.0	28	83	10	71	31	5	5	57	1.43
38229923--38230008	20	4.4	20	73	5	68	39	19	9	31	1.84
38229935--38230017	20	4.3	19	74	9	69	37	18	9	34	1.83
38231396--38231430	15	2.3	15	90	0	52	0	11	2	85	0.69
38240484--38240567	22	3.8	21	78	9	71	38	1	17	42	1.57
38244142--38244196	20	2.7	20	80	5	56	36	1	29	32	1.68
38257588--38257633	2	23.0	2	100	0	92	50	0	0	50	1.00
38257633--38257657	2	12.5	2	100	0	50	0	0	48	52	1.00
38259572--38259645	38	1.9	38	88	0	112	45	16	9	28	1.78
38266252--38266363	21	5.3	21	79	0	125	24	29	21	25	1.99
38266252--38266361	42	2.6	42	86	0	148	24	29	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38275243--38275286	21	2.1	21	83	8	54	40	20	15	22	1.90
38275940--38276167	24	9.5	24	83	1	296	21	25	14	37	1.92
38275946--38276167	48	4.6	48	90	0	336	21	26	15	36	1.93
38277933--38277996	34	1.9	33	87	3	92	34	12	15	37	1.85
38280681--38280777	21	4.7	21	94	1	169	62	17	9	10	1.52
38281612--38281680	33	2.1	33	86	5	95	11	2	36	49	1.54
38281703--38281747	20	2.2	21	80	11	58	11	2	40	46	1.52
38282858--38282924	19	3.3	20	78	14	68	55	5	1	37	1.34
38303590--38303623	16	2.0	18	88	11	54	41	17	0	41	1.50
38306207--38306246	21	1.9	21	94	0	71	42	0	55	2	1.13
38306210--38306247	12	3.2	12	88	0	58	44	0	52	2	1.14
38311808--38311854	15	3.1	15	75	6	51	27	0	6	65	1.16
38311899--38311953	28	2.0	28	85	0	74	40	3	18	38	1.68
38312738--38312792	28	2.0	28	92	0	92	41	3	18	36	1.68
38319282--38319333	26	2.0	26	85	7	70	61	5	7	25	1.45
38327476--38327521	18	2.5	17	86	10	56	39	2	0	58	1.10
38328820--38328870	26	1.9	27	88	4	77	27	7	3	60	1.42
38333751--38333779	14	2.1	14	100	0	58	34	27	24	13	1.93
38347123--38347167	2	22.5	2	100	0	90	51	0	0	48	1.00
38347334--38347395	28	2.2	28	80	5	72	32	1	4	61	1.27
38349427--38349516	28	3.2	28	66	17	69	24	21	21	33	1.97
38349365--38349685	56	5.7	56	83	0	365	26	19	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38349511--38349596	28	3.1	28	64	18	70	26	18	25	29	1.98
38352099--38352146	13	3.8	13	76	20	57	60	0	0	39	0.97
38352104--38352146	18	2.3	18	84	11	52	60	0	0	39	0.97
38352707--38352774	22	3.1	22	91	0	118	60	2	4	32	1.32
38360798--38360837	18	2.2	18	90	0	62	37	22	20	20	1.94
38384321--38384388	24	2.8	24	86	0	100	26	27	22	23	1.99
38392430--38392477	16	2.9	17	70	17	55	25	18	18	37	1.94
38402708--38402759	25	2.1	25	82	7	61	55	3	5	34	1.42
38402837--38402868	2	16.0	2	100	0	64	50	0	0	50	1.00
38403899--38403923	11	2.3	11	100	0	50	72	0	0	28	0.86
38404228--38404345	9	13.1	9	70	17	50	37	0	3	59	1.14
38404228--38404322	47	2.1	44	86	5	127	37	0	4	57	1.18
38404226--38404318	37	2.5	38	83	10	104	39	0	4	55	1.19
38404235--38404342	18	5.9	17	73	13	74	37	0	3	59	1.15
38404861--38404940	18	4.3	18	72	16	56	55	2	2	40	1.27
38404870--38404940	10	7.5	10	74	15	53	53	2	2	40	1.30
38404869--38404940	28	2.6	27	89	6	108	52	2	2	41	1.30
38405278--38405345	29	2.3	28	80	9	73	38	7	8	45	1.63
38413487--38413537	22	2.3	22	93	0	84	7	5	19	66	1.38
38416827--38416865	20	2.0	20	89	0	60	46	2	7	43	1.46
38420582--38420659	39	2.0	40	97	2	149	41	10	23	25	1.86
38435999--38436044	21	2.2	21	100	0	92	30	17	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38438412--38438442	14	2.2	14	94	0	53	19	0	25	54	1.44
38440209--38440248	20	2.0	20	100	0	80	35	15	15	35	1.88
38440546--38440588	20	2.2	20	82	0	50	48	4	4	41	1.44
38448681--38448720	19	2.1	19	95	0	71	52	0	2	45	1.14
38463218--38463251	14	2.3	15	85	5	52	67	0	0	32	0.91
38463553--38463593	21	1.9	22	90	5	66	31	0	24	43	1.54
38463497--38463604	29	3.7	29	78	13	114	32	4	26	36	1.77
38464321--38464356	16	2.3	16	90	4	56	80	2	0	16	0.83
38465393--38465980	123	4.8	122	86	1	771	22	20	17	38	1.93
38465389--38465980	247	2.4	246	86	1	862	22	20	17	39	1.93
38465877--38466056	75	2.4	75	93	0	306	21	21	20	37	1.95
38465747--38466178	198	2.2	198	89	1	650	21	21	18	38	1.94
38465952--38466421	245	1.9	245	88	2	712	21	22	17	38	1.94
38465952--38466421	122	3.8	123	89	1	687	21	22	17	38	1.94
38466321--38466496	75	2.4	74	91	2	282	21	19	19	39	1.92
38466628--38466736	42	2.6	42	79	2	112	20	22	11	44	1.84
38466766--38467032	49	5.5	49	69	4	137	19	26	17	37	1.93
38468839--38468884	18	2.3	20	85	10	60	8	17	4	69	1.31
38473217--38473293	30	2.6	29	81	6	100	38	6	20	33	1.79
38473217--38473302	30	2.9	29	78	14	95	40	6	20	31	1.79
38479197--38479228	16	2.0	16	93	0	55	53	3	18	25	1.59
38480908--38480959	21	2.5	21	81	6	61	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38485850--38485889	21	1.9	21	84	0	53	27	17	25	30	1.97
38489041--38489141	36	2.8	36	89	1	139	36	11	29	21	1.90
38489632--38489812	92	2.0	92	90	2	283	25	9	28	35	1.87
38489707--38489975	116	2.3	116	93	0	448	28	8	26	36	1.86
38490012--38490063	21	2.5	21	87	0	68	23	13	25	38	1.91
38492292--38492348	24	2.4	24	84	0	78	50	5	24	19	1.68
38492266--38492410	63	2.3	63	89	2	220	46	6	26	21	1.75
38492355--38492423	24	2.9	24	95	0	120	49	4	27	18	1.67
38492376--38492422	15	3.5	15	68	31	52	51	4	29	14	1.62
38492315--38492398	39	2.2	40	78	6	91	48	5	26	19	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182