genome.fa.s9.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  26  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10629421--10629620	29	6.8	29	77	11	97	35	3	24	36	1.73
10629562--10629620	30	1.9	30	86	10	84	44	0	16	38	1.48
10631653--10631719	29	2.3	29	82	5	73	56	1	1	40	1.17
10632315--10632986	92	7.3	91	90	3	976	32	19	15	33	1.93
10632791--10632940	40	3.5	39	71	23	129	34	20	14	30	1.92
10632986--10633153	50	3.3	51	77	6	137	11	26	22	40	1.87
10639155--10639208	6	9.7	6	76	15	53	51	3	0	44	1.19
10639155--10639223	11	6.2	11	78	11	61	49	4	1	44	1.31
10639154--10639204	5	9.6	5	78	19	50	52	3	0	43	1.19
10649193--10649708	168	3.1	165	88	5	766	33	26	18	21	1.96
10654599--10654659	29	2.1	29	85	8	81	29	13	26	31	1.93
10654774--10654989	29	7.3	29	77	11	192	33	4	26	36	1.76
10654762--10654871	58	1.9	58	81	3	132	34	2	29	33	1.72
10656476--10656531	11	5.0	11	81	12	69	57	3	0	39	1.16
10656476--10656533	5	10.6	5	77	17	53	55	3	0	41	1.17
10656483--10656528	17	2.7	17	89	0	65	56	4	0	39	1.19
10656480--10656552	29	2.6	29	80	6	69	54	4	1	39	1.28
10656463--10656546	17	5.0	16	82	5	60	53	3	1	41	1.26
10656479--10656545	34	2.0	34	82	5	82	55	4	1	38	1.29
10657147--10657816	92	7.3	91	90	2	972	32	19	15	32	1.92
10657151--10657816	273	2.4	275	89	3	1022	32	19	14	33	1.92
10657852--10657978	50	2.6	50	80	1	139	10	25	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10658866--10658915	12	3.8	13	78	21	52	4	14	6	76	1.13
10664599--10664793	29	6.7	28	75	16	116	34	3	26	35	1.74
10664604--10664862	30	8.7	29	78	8	193	35	4	24	35	1.75
10664604--10664793	59	3.2	59	79	10	219	35	3	24	35	1.74
10666058--10666103	24	2.0	24	83	12	60	43	2	2	52	1.25
10666698--10666739	20	2.1	20	100	0	84	9	9	40	40	1.70
10666892--10666945	6	9.7	6	78	15	62	53	3	0	42	1.18
10666892--10666960	11	6.2	11	81	11	70	50	4	1	43	1.30
10678324--10678616	147	2.0	148	95	0	525	45	19	20	14	1.86
10687900--10687941	21	2.0	21	86	9	59	33	21	28	16	1.95
10690144--10690187	20	2.1	21	83	4	54	36	15	2	45	1.59
10694188--10694337	40	3.5	40	71	23	133	30	14	20	34	1.92
10694142--10694811	92	7.3	92	92	2	1073	32	15	19	32	1.93
10695427--10695482	11	5.0	11	83	12	69	39	0	3	57	1.16
10695430--10695496	17	3.9	17	80	9	75	40	0	2	56	1.14
10695425--10695482	5	10.6	5	77	17	53	41	0	3	55	1.17
10695406--10695482	28	2.7	29	82	6	77	40	1	3	54	1.27
10696269--10696330	28	2.2	28	80	5	72	50	1	6	41	1.38
10697533--10697757	57	3.9	58	78	8	217	36	25	4	34	1.75
10697533--10697763	29	8.0	28	76	8	180	35	25	3	35	1.74
10697606--10697763	86	1.8	86	87	4	239	35	25	3	35	1.74
10711062--10711113	27	1.9	27	88	7	79	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10724132--10724650	168	3.1	168	92	2	860	21	18	26	33	1.97
10727595--10727886	146	2.0	148	94	1	516	44	19	20	14	1.86
10737165--10737206	21	2.0	21	86	9	59	33	21	28	16	1.95
10739411--10739454	20	2.1	21	83	4	54	36	15	2	45	1.59
10744708--10744797	28	3.2	28	75	12	87	28	10	28	32	1.89
10744720--10744794	27	2.7	28	93	4	134	30	8	29	32	1.86
10744897--10745185	30	9.7	30	79	7	243	34	3	24	37	1.71
10744893--10745184	59	4.9	58	77	9	243	34	3	25	36	1.72
10747220--10747273	6	9.7	6	78	15	62	53	3	0	42	1.18
10747220--10747288	11	6.2	11	81	11	70	50	4	1	43	1.30
10749667--10749695	15	2.0	15	93	6	51	58	6	6	27	1.50
10766343--10766387	17	2.6	17	96	0	81	44	22	13	20	1.85
10767165--10767198	16	2.1	16	100	0	68	26	17	5	50	1.69
10768762--10769280	168	3.1	168	92	2	860	33	26	18	21	1.97
10781099--10781390	146	2.0	148	95	1	525	45	19	19	14	1.85
10788622--10788663	21	2.0	21	86	9	59	33	21	28	16	1.95
10790867--10790910	20	2.1	21	83	4	54	36	15	2	45	1.59
10797178--10797238	28	2.1	29	88	8	90	31	11	24	32	1.91
10797187--10797241	29	1.9	28	96	3	101	30	12	29	27	1.93
10797336--10797573	58	4.1	60	77	14	196	33	3	26	36	1.73
10797338--10797573	29	8.1	29	78	10	166	33	3	25	37	1.73
10799616--10799671	11	5.0	11	81	12	69	57	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10799616--10799673	5	10.6	5	77	17	53	55	3	0	41	1.17
10799612--10799692	29	2.8	30	81	7	87	54	2	1	41	1.21
10799599--10799686	17	5.2	17	82	4	88	52	2	1	44	1.21
10800292--10800957	92	7.3	91	91	3	993	32	19	15	33	1.92
10800762--10800911	40	3.5	39	71	23	129	35	20	13	30	1.91
10800993--10801122	50	2.6	50	80	6	163	9	24	23	43	1.83
10802009--10802058	12	3.8	13	78	21	52	4	14	6	76	1.13
10803789--10803816	12	2.3	12	100	0	56	57	14	14	14	1.66
10807749--10808013	29	9.0	29	82	9	261	33	3	26	36	1.72
10807737--10807974	59	4.1	58	83	5	246	32	3	26	36	1.74
10807751--10808025	59	4.7	58	81	8	236	34	3	26	36	1.73
10810090--10810165	6	13.2	6	80	13	63	56	2	0	40	1.13
10810089--10810187	11	8.8	11	83	9	103	54	3	1	41	1.22
10810100--10810187	16	5.4	16	82	10	90	54	3	1	40	1.24
10810100--10810186	5	16.0	5	80	14	84	55	3	1	40	1.24
10816741--10816788	16	2.9	17	70	17	55	64	4	4	27	1.30
10827686--10827730	17	2.6	17	96	0	81	44	22	13	20	1.85
10828508--10828541	16	2.1	16	100	0	68	26	17	5	50	1.69
10830105--10830623	168	3.1	168	92	2	860	33	26	18	21	1.97
10840162--10840680	168	3.1	168	90	2	797	33	25	18	22	1.96
10845580--10845625	24	1.9	24	90	0	74	41	17	13	28	1.86
10845635--10845668	15	2.3	15	94	0	59	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10846147--10846212	22	2.9	22	80	8	62	39	1	3	56	1.24
10846202--10846266	30	2.2	31	81	10	73	40	3	7	49	1.47
10849593--10849626	18	2.0	17	88	11	52	61	0	0	38	0.96
10855939--10855977	20	2.0	19	85	5	51	17	5	0	76	0.96
10855967--10856006	19	2.1	19	86	9	55	30	12	2	55	1.50
10856905--10856947	18	2.3	19	84	8	61	67	2	0	30	1.03
10860053--10860107	9	6.2	9	80	4	67	47	0	0	52	1.00
10860054--10860104	8	6.0	8	80	11	57	49	0	0	50	1.00
10860088--10860134	19	2.4	20	85	3	60	42	0	8	48	1.33
10860513--10860576	10	6.6	9	80	16	74	39	1	0	59	1.07
10860505--10860618	20	5.7	20	77	15	119	39	0	0	59	1.03
10860496--10860602	50	2.1	50	85	10	139	37	0	0	61	1.02
10860594--10860623	15	1.9	16	93	6	53	50	0	0	50	1.00
10860761--10860799	21	1.9	21	89	5	62	30	23	10	35	1.88
10871265--10871295	7	4.6	7	96	4	55	45	22	0	32	1.53
10882982--10883028	23	2.0	24	88	12	71	61	0	2	36	1.08
10883006--10883067	27	2.3	27	78	15	67	59	3	1	35	1.23
10886984--10887203	111	2.0	108	86	6	302	20	10	17	51	1.75
10898354--10898399	22	2.1	22	84	8	58	34	4	21	39	1.73
10902580--10902626	22	2.3	22	85	10	64	51	6	0	42	1.27
10904430--10904477	20	2.3	21	82	13	55	64	2	0	33	1.05
10913050--10913098	20	2.5	20	96	0	89	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10913048--10913103	20	3.1	17	74	18	51	42	0	1	55	1.10
10915153--10915216	22	3.0	20	73	13	65	50	0	1	48	1.10
10915171--10915222	11	4.9	11	79	9	63	48	1	1	48	1.24
10915153--10915222	20	3.4	20	81	14	72	47	1	1	50	1.19
10916891--10916995	55	1.9	55	88	0	156	26	6	17	49	1.71
10918444--10918477	17	1.9	18	88	5	52	44	0	0	55	0.99
10918950--10919068	57	2.1	57	87	7	170	36	0	16	47	1.47
10919287--10919331	23	2.0	23	86	0	63	35	20	13	31	1.91
10922016--10922167	77	2.0	76	90	1	241	37	22	17	23	1.94
10926010--10926046	18	2.1	18	89	0	56	35	0	8	56	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182