genome.fa.s9.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  25  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10384410--10384499	38	2.4	37	81	7	101	24	2	12	61	1.42
10384410--10384492	32	2.6	32	94	0	139	24	2	12	61	1.42
10386174--10386225	21	2.5	21	81	6	61	32	25	13	28	1.93
10386978--10387431	201	2.3	192	82	6	518	24	26	20	27	1.99
10389199--10389469	135	2.0	135	86	2	384	24	18	26	29	1.98
10389739--10389815	18	4.3	18	78	6	84	31	7	48	12	1.70
10389739--10389815	36	2.1	36	85	4	102	31	7	48	12	1.70
10390238--10390375	48	2.9	47	83	4	186	21	15	26	36	1.93
10392652--10392877	112	2.0	112	100	0	452	34	15	17	32	1.92
10393694--10393728	18	2.0	17	88	5	52	17	31	0	51	1.45
10405411--10405577	83	2.0	83	98	0	325	49	14	16	19	1.80
10410576--10410607	14	2.3	14	94	0	55	46	25	18	9	1.79
10410853--10410898	25	1.9	25	86	8	69	32	4	6	56	1.45
10416926--10416970	23	1.9	24	90	4	74	33	2	6	57	1.37
10433208--10433680	168	2.8	168	94	0	804	33	26	17	22	1.96
10450293--10450336	20	2.1	21	83	4	54	36	15	2	45	1.59
10457119--10457182	28	2.3	29	84	13	89	29	6	31	32	1.82
10457277--10457448	29	6.0	28	79	9	179	33	2	26	37	1.69
10457252--10457448	57	3.4	55	81	11	184	33	3	26	37	1.72
10457310--10457449	57	2.4	58	84	4	185	34	3	24	37	1.73
10457311--10457508	57	3.4	58	80	7	170	37	3	23	35	1.72
10458543--10458602	21	2.7	21	75	12	50	41	3	3	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10459403--10459491	23	4.0	22	79	16	76	56	3	0	40	1.16
10459421--10459491	6	12.7	6	75	14	62	57	2	0	39	1.13
10459421--10459491	11	6.4	11	82	12	74	57	2	0	39	1.13
10459445--10459474	15	2.0	15	93	0	51	63	0	0	36	0.95
10459414--10459491	33	2.3	32	80	6	84	58	2	0	38	1.12
10459404--10459512	28	3.9	28	75	16	91	55	3	0	40	1.24
10459449--10459512	29	2.3	27	83	8	74	56	1	1	40	1.18
10460106--10460889	92	8.6	92	91	1	1234	33	18	15	32	1.93
10461016--10461305	50	5.8	49	71	13	207	11	25	23	39	1.88
10461046--10461206	49	3.3	49	73	19	145	10	27	21	39	1.86
10460982--10461249	99	2.7	100	80	2	306	13	26	21	38	1.90
10461572--10461857	29	9.7	29	75	11	208	34	3	25	36	1.73
10461572--10461862	58	5.0	57	77	6	237	34	3	26	36	1.73
10461572--10461857	87	3.2	87	77	9	285	34	3	25	36	1.73
10463026--10463085	21	2.7	21	75	12	50	41	3	3	51	1.35
10463835--10463886	17	3.1	16	86	5	59	51	3	1	42	1.31
10470451--10470501	16	3.1	16	71	23	52	62	3	5	27	1.36
10482478--10482771	148	2.0	148	96	0	543	45	19	20	14	1.85
10492064--10492105	21	2.0	21	86	9	59	35	23	23	16	1.95
10494310--10494353	20	2.1	21	83	4	54	36	15	2	45	1.59
10496879--10497238	41	8.8	41	81	6	259	32	21	26	19	1.97
10496856--10497076	121	1.8	121	90	0	352	31	22	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10498880--10498960	40	2.0	40	100	0	162	23	2	12	61	1.42
10499272--10499323	8	6.5	8	81	0	59	42	0	0	57	0.98
10499255--10499321	12	5.1	12	83	16	80	47	1	0	50	1.10
10499258--10499323	20	3.2	20	78	4	78	43	1	0	54	1.09
10499368--10499400	4	8.5	4	93	6	59	51	0	0	48	1.00
10499413--10499518	18	5.3	21	72	17	84	48	1	0	49	1.18
10499161--10499475	163	2.0	158	87	6	451	47	8	0	43	1.39
10499460--10500175	97	7.4	96	92	2	1051	49	0	5	44	1.31
10499460--10500175	48	14.8	48	91	1	1067	49	0	5	44	1.31
10499460--10500176	145	4.9	145	92	1	1098	49	0	5	44	1.31
10500139--10500187	18	2.7	18	70	3	53	48	0	2	48	1.12
10505723--10505879	66	2.4	66	85	2	217	43	15	24	15	1.86
10505865--10505917	21	2.5	21	84	0	70	32	18	45	3	1.68
10510180--10510240	29	2.1	29	85	8	81	31	13	24	31	1.93
10510354--10510569	29	7.4	29	76	10	199	33	3	25	37	1.74
10512042--10512097	11	5.0	11	81	12	69	57	3	0	39	1.16
10512042--10512099	5	10.6	5	77	17	53	55	3	0	41	1.17
10512049--10512094	17	2.7	17	89	0	65	56	4	0	39	1.19
10512046--10512118	29	2.6	29	80	6	69	54	4	1	39	1.28
10512029--10512112	17	5.0	16	82	5	60	53	3	1	41	1.26
10512045--10512111	34	2.0	34	82	5	82	55	4	1	38	1.29
10512716--10513386	92	7.3	91	91	2	992	32	19	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513190--10513339	40	3.5	39	71	23	129	35	20	13	30	1.91
10520173--10520433	30	9.0	28	80	8	195	34	4	25	35	1.76
10520201--10520438	30	8.1	29	79	6	212	34	4	25	35	1.75
10520179--10520438	59	4.5	58	75	12	196	35	4	25	35	1.76
10521570--10521617	22	2.2	22	84	0	60	43	2	0	54	1.12
10521615--10521652	19	2.0	20	84	5	51	44	2	2	50	1.30
10522429--10522481	6	9.7	6	75	19	53	52	3	0	43	1.19
10522428--10522483	5	10.6	5	76	17	51	51	3	0	44	1.18
10528979--10529035	18	3.1	18	77	10	53	43	3	1	50	1.29
10529849--10529914	28	2.3	28	86	2	87	56	1	1	40	1.18
10529849--10529910	11	5.5	11	77	9	63	54	1	1	41	1.19
10529853--10529910	17	3.5	17	83	6	66	53	1	1	43	1.21
10550999--10551517	168	3.1	168	92	2	860	33	26	18	21	1.97
10561055--10561573	168	3.1	168	90	2	797	33	25	18	22	1.96
10566461--10566506	24	1.9	24	90	0	74	41	17	13	28	1.86
10572842--10572883	21	2.0	21	86	9	59	33	21	28	16	1.95
10575086--10575129	20	2.1	21	83	4	54	36	15	2	45	1.59
10581392--10581452	28	2.1	29	88	8	90	31	11	24	32	1.91
10581401--10581455	29	1.9	28	96	3	101	30	12	29	27	1.93
10581551--10581809	29	9.0	28	79	8	218	33	4	26	35	1.76
10581556--10581809	86	2.9	87	80	9	252	34	4	25	35	1.76
10583870--10583925	11	5.0	11	81	12	69	57	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10583870--10583927	5	10.6	5	77	17	53	55	3	0	41	1.17
10583866--10583946	29	2.8	30	81	7	87	54	2	1	41	1.21
10583853--10583940	17	5.2	17	82	4	88	52	2	1	44	1.21
10584542--10585211	92	7.3	91	91	2	1008	32	19	15	32	1.93
10585016--10585165	40	3.5	39	71	23	129	35	20	13	30	1.91
10585247--10585376	50	2.6	50	79	6	154	9	25	23	42	1.83
10586261--10586310	12	3.8	13	78	21	52	4	14	6	76	1.13
10588041--10588068	12	2.3	12	100	0	56	57	14	14	14	1.66
10591845--10591906	27	2.3	27	80	2	70	29	8	29	33	1.86
10592008--10592226	29	7.4	28	78	10	170	34	2	24	38	1.70
10592064--10592226	30	5.5	29	78	14	147	36	1	20	40	1.64
10592064--10592224	59	2.7	59	82	5	189	37	1	21	39	1.64
10592532--10592602	32	2.2	33	90	7	110	59	7	9	23	1.54
10592499--10592602	32	3.3	32	81	11	108	55	6	13	24	1.62
10593631--10593695	11	5.8	11	83	8	71	52	4	1	41	1.31
10593631--10593682	5	9.6	5	84	15	68	53	3	0	42	1.19
10593638--10593694	17	3.4	16	87	4	78	52	5	1	40	1.34
10593631--10593695	28	2.3	28	89	5	96	52	4	1	41	1.31
10600253--10600303	16	3.1	16	71	23	52	62	3	5	27	1.36
10614687--10614728	21	2.0	21	86	9	59	33	21	28	16	1.95
10616934--10616977	20	2.1	21	83	4	54	36	15	2	45	1.59
10623246--10623305	28	2.1	28	81	6	68	33	11	23	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10623406--10623596	29	6.6	29	81	8	192	35	3	24	36	1.73
10623414--10623580	87	1.9	88	85	8	234	32	4	26	36	1.76
10623519--10623626	29	3.6	30	81	7	87	40	1	20	37	1.63
10623549--10623627	30	2.6	30	80	5	88	41	1	20	36	1.60
10625643--10625711	29	2.4	29	82	4	77	56	1	1	40	1.17
10626306--10626975	92	7.3	91	91	2	1008	32	19	15	32	1.93
10626780--10626929	40	3.5	39	71	23	129	34	20	14	30	1.92
10626975--10627142	50	3.3	51	77	6	137	11	26	22	40	1.87
10629262--10629320	28	2.1	28	81	9	68	32	11	23	32	1.91
10629421--10629580	29	5.6	28	81	5	178	33	4	26	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182